# STOCKHOLM 1.0
#=GF ID 2.170.120.12/FF/000009
#=GF DE DNA-directed RNA polymerase II 36 kDa polypeptide A
#=GF AC 2.170.120.12/FF/000009
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 47.138
#=GS D0NY82/44-175      AC D0NY82
#=GS D0NY82/44-175      OS Phytophthora infestans T30-4
#=GS D0NY82/44-175      DE DNA-directed RNA polymerase II 36 kDa polypeptide A
#=GS D0NY82/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora infestans; 
#=GS B8BWN8/41-175      AC B8BWN8
#=GS B8BWN8/41-175      OS Thalassiosira pseudonana
#=GS B8BWN8/41-175      DE RP3A,-like protein to dna-directed RNA polymerase II third largest subunit
#=GS B8BWN8/41-175      DR ORG; Eukaryota; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira; Thalassiosira pseudonana; 
#=GS K3W7V5/44-175      AC K3W7V5
#=GS K3W7V5/44-175      OS Globisporangium ultimum DAOM BR144
#=GS K3W7V5/44-175      DE Uncharacterized protein
#=GS K3W7V5/44-175      DR ORG; Eukaryota; Oomycetes; Pythiales; Pythiaceae; Globisporangium; Globisporangium ultimum; 
#=GS M4B1Q5/44-175      AC M4B1Q5
#=GS M4B1Q5/44-175      OS Hyaloperonospora arabidopsidis Emoy2
#=GS M4B1Q5/44-175      DE Uncharacterized protein
#=GS M4B1Q5/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Hyaloperonospora; Hyaloperonospora arabidopsidis; 
#=GS A0A0P1B0V8/44-175  AC A0A0P1B0V8
#=GS A0A0P1B0V8/44-175  OS Plasmopara halstedii
#=GS A0A0P1B0V8/44-175  DE Dna-directed rna polymerase ii subunit rpb3-a-like
#=GS A0A0P1B0V8/44-175  DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Plasmopara; Plasmopara halstedii; 
#=GS A0A081A1D7/44-175  AC A0A081A1D7
#=GS A0A081A1D7/44-175  OS Phytophthora parasitica P1976
#=GS A0A081A1D7/44-175  DE Uncharacterized protein
#=GS A0A081A1D7/44-175  DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS H3GMV0/44-175      AC H3GMV0
#=GS H3GMV0/44-175      OS Phytophthora ramorum
#=GS H3GMV0/44-175      DE Uncharacterized protein
#=GS H3GMV0/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora ramorum; 
#=GS A0A0W8BNE7/44-175  AC A0A0W8BNE7
#=GS A0A0W8BNE7/44-175  OS Phytophthora nicotianae
#=GS A0A0W8BNE7/44-175  DE DNA-directed RNA polymerases II
#=GS A0A0W8BNE7/44-175  DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora nicotianae; 
#=GS G4YH09/44-175      AC G4YH09
#=GS G4YH09/44-175      OS Phytophthora sojae strain P6497
#=GS G4YH09/44-175      DE Uncharacterized protein
#=GS G4YH09/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora sojae; 
#=GS A0A329T5G1/44-175  AC A0A329T5G1
#=GS A0A329T5G1/44-175  OS Phytophthora cactorum
#=GS A0A329T5G1/44-175  DE Uncharacterized protein
#=GS A0A329T5G1/44-175  DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora cactorum; 
#=GS A0A3F2RLB7/44-175  AC A0A3F2RLB7
#=GS A0A3F2RLB7/44-175  OS Phytophthora kernoviae
#=GS A0A3F2RLB7/44-175  DE Uncharacterized protein
#=GS A0A3F2RLB7/44-175  DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora kernoviae; 
#=GS W2Q2Q6/44-175      AC W2Q2Q6
#=GS W2Q2Q6/44-175      OS Phytophthora parasitica INRA-310
#=GS W2Q2Q6/44-175      DE Uncharacterized protein
#=GS W2Q2Q6/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2Z4A0/44-175      AC W2Z4A0
#=GS W2Z4A0/44-175      OS Phytophthora parasitica P10297
#=GS W2Z4A0/44-175      DE Uncharacterized protein
#=GS W2Z4A0/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2KZN9/44-175      AC W2KZN9
#=GS W2KZN9/44-175      OS Phytophthora parasitica
#=GS W2KZN9/44-175      DE Uncharacterized protein
#=GS W2KZN9/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS V9EXP0/44-175      AC V9EXP0
#=GS V9EXP0/44-175      OS Phytophthora parasitica P1569
#=GS V9EXP0/44-175      DE Uncharacterized protein
#=GS V9EXP0/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2WU26/44-175      AC W2WU26
#=GS W2WU26/44-175      OS Phytophthora parasitica CJ01A1
#=GS W2WU26/44-175      DE Uncharacterized protein
#=GS W2WU26/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS A0A081A1D6/44-175  AC A0A081A1D6
#=GS A0A081A1D6/44-175  OS Phytophthora parasitica P1976
#=GS A0A081A1D6/44-175  DE Uncharacterized protein
#=GS A0A081A1D6/44-175  DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2Z6N9/44-175      AC W2Z6N9
#=GS W2Z6N9/44-175      OS Phytophthora parasitica P10297
#=GS W2Z6N9/44-175      DE Uncharacterized protein
#=GS W2Z6N9/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2WTJ7/44-175      AC W2WTJ7
#=GS W2WTJ7/44-175      OS Phytophthora parasitica CJ01A1
#=GS W2WTJ7/44-175      DE Uncharacterized protein
#=GS W2WTJ7/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2Q2U8/44-175      AC W2Q2U8
#=GS W2Q2U8/44-175      OS Phytophthora parasitica INRA-310
#=GS W2Q2U8/44-175      DE Uncharacterized protein
#=GS W2Q2U8/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS V9EZU3/44-175      AC V9EZU3
#=GS V9EZU3/44-175      OS Phytophthora parasitica P1569
#=GS V9EZU3/44-175      DE Uncharacterized protein
#=GS V9EZU3/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2GNY8/44-175      AC W2GNY8
#=GS W2GNY8/44-175      OS Phytophthora parasitica
#=GS W2GNY8/44-175      DE Uncharacterized protein
#=GS W2GNY8/44-175      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GF SQ 22
D0NY82/44-175              TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVTAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDSGVIIAKLGPGQRLRLSAIAKLGIGKEHA
B8BWN8/41-175              TLAIDLVEYSENSSVLNDEYIAHRLGLVPIRFMAEGSL----------KECVCYDRCPRCCVEFELDVNFDKVNQTRPDTERDLALTVTSRDLISNNMLVSPAHFLNEEEQDESHDEGISIVKLGPGQHLKLKAIARMGISKEHA
K3W7V5/44-175              TLAIDLVSIEVNTSVMTDEFLAHRLGMIPLYF--DGGLENFRQRFVYSQDCDCDEHCPNCSVEFQLDVRAD-----------QGVMTVTSEALKSLDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
M4B1Q5/44-175              TLAIDLVSIEINSSVMTDEFLAHRLGMIPLNF--DGGLENFSQRFVYSQDCDCDENCPNCSVEFTLDVTAD-----------SGVVSVTTEALKSSDPYIRPVNFSSEEELNNTQDSGVIIAKLGPGQRLRLSAIAKLGVGKEHA
A0A0P1B0V8/44-175          TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFSLDVMAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDSGVIIAKLGPGQRLRLSAIAKLGIGKEHA
A0A081A1D7/44-175          TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVIAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
H3GMV0/44-175              TLAIDLVSVEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFSLDVTAD-----------GGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
A0A0W8BNE7/44-175          TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVIAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
G4YH09/44-175              TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSADCDCDENCPNCSVEFSLDVTAD-----------NGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDSGVIIAKLGPGQRLRLSAIAKLGIGKEHA
A0A329T5G1/44-175          TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVTAD-----------SGVSSVTSEDLKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
A0A3F2RLB7/44-175          TLAIDLVSVEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVTAD-----------QGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGVGKEHA
W2Q2Q6/44-175              TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVIAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
W2Z4A0/44-175              TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVIAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
W2KZN9/44-175              TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVIAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
V9EXP0/44-175              TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVIAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
W2WU26/44-175              TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVIAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
A0A081A1D6/44-175          TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVIAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
W2Z6N9/44-175              TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVIAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
W2WTJ7/44-175              TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVIAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
W2Q2U8/44-175              TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVIAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
V9EZU3/44-175              TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVIAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
W2GNY8/44-175              TLAIDLVSIEINTSVMTDEFLAHRLGMIPLNF--DGGLENFRQRFVYSQDCDCDENCPNCSVEFTLDVIAD-----------SGVLSVTSEALKSSDPYIRPVNFSSEEELNNTQDTGVIIAKLGPGQRLRLSAIAKLGIGKEHA
#=GC scorecons             9999999545495996699769999967965900796944434444445794957599596999499934900000000000446759985594956557596695699956666949759699999969795999769869999
#=GC scorecons_70          *******____*_***_*************_*__**_*___________**_*_*_**_*_***_***__*______________*_***__*_*_*__*_*__*__***_*__**_**_*_**********_*******_****
#=GC scorecons_80          *******____*_**__***_*****__*__*___*_*____________*_*___**_*_***_***__*______________*_***__*_*______*__*__***_____*_*__*_******_*_*_***__**_****
#=GC scorecons_90          *******____*_**__**__*****__*__*___*_*____________*_*___**_*_***_***__*________________***__*_*______*__*__***_____*_*__*_******_*_*_***__**_****
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