# STOCKHOLM 1.0
#=GF ID 2.170.120.12/FF/000007
#=GF DE DNA-directed RNA polymerases I and III subunit RPAC1
#=GF AC 2.170.120.12/FF/000007
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 73.365
#=GS B3S4F3/84-220      AC B3S4F3
#=GS B3S4F3/84-220      OS Trichoplax adhaerens
#=GS B3S4F3/84-220      DE Uncharacterized protein
#=GS B3S4F3/84-220      DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; 
#=GS D0NVB2/69-201      AC D0NVB2
#=GS D0NVB2/69-201      OS Phytophthora infestans T30-4
#=GS D0NVB2/69-201      DE DNA-directed RNA polymerase I and III subunit RPAC1, putative
#=GS D0NVB2/69-201      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora infestans; 
#=GS D0NZD7/73-205      AC D0NZD7
#=GS D0NZD7/73-205      OS Phytophthora infestans T30-4
#=GS D0NZD7/73-205      DE DNA-directed RNA polymerase I and III subunit RPAC1, putative
#=GS D0NZD7/73-205      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora infestans; 
#=GS B8CCH8/82-236      AC B8CCH8
#=GS B8CCH8/82-236      OS Thalassiosira pseudonana
#=GS B8CCH8/82-236      DE Dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like protein
#=GS B8CCH8/82-236      DR ORG; Eukaryota; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira; Thalassiosira pseudonana; 
#=GS A0A1S8VJF9/83-220  AC A0A1S8VJF9
#=GS A0A1S8VJF9/83-220  OS Batrachochytrium salamandrivorans
#=GS A0A1S8VJF9/83-220  DE Uncharacterized protein
#=GS A0A1S8VJF9/83-220  DR ORG; Eukaryota; Fungi; Chytridiomycota; Chytridiomycetes; Rhizophydiales; Batrachochytrium; Batrachochytrium salamandrivorans; 
#=GS K3X7N1/75-207      AC K3X7N1
#=GS K3X7N1/75-207      OS Globisporangium ultimum DAOM BR144
#=GS K3X7N1/75-207      DE Uncharacterized protein
#=GS K3X7N1/75-207      DR ORG; Eukaryota; Oomycetes; Pythiales; Pythiaceae; Globisporangium; Globisporangium ultimum; 
#=GS A0A0P1AUD4/73-205  AC A0A0P1AUD4
#=GS A0A0P1AUD4/73-205  OS Plasmopara halstedii
#=GS A0A0P1AUD4/73-205  DE Dna-directed rna polymerase i and iii subunit
#=GS A0A0P1AUD4/73-205  DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Plasmopara; Plasmopara halstedii; 
#=GS A0A369S2G6/84-220  AC A0A369S2G6
#=GS A0A369S2G6/84-220  OS Trichoplax sp. H2
#=GS A0A369S2G6/84-220  DE DNA-directed RNA polymerases I and III subunit RPAC1
#=GS A0A369S2G6/84-220  DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax sp. H2; 
#=GS W2PFI9/73-205      AC W2PFI9
#=GS W2PFI9/73-205      OS Phytophthora parasitica INRA-310
#=GS W2PFI9/73-205      DE Uncharacterized protein
#=GS W2PFI9/73-205      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS A0A0W8DK05/73-205  AC A0A0W8DK05
#=GS A0A0W8DK05/73-205  OS Phytophthora nicotianae
#=GS A0A0W8DK05/73-205  DE DNA-directed RNA polymerases I and III subunit RPAC1
#=GS A0A0W8DK05/73-205  DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora nicotianae; 
#=GS A0A3R7H6E8/75-207  AC A0A3R7H6E8
#=GS A0A3R7H6E8/75-207  OS Phytophthora kernoviae
#=GS A0A3R7H6E8/75-207  DE Uncharacterized protein
#=GS A0A3R7H6E8/75-207  DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora kernoviae; 
#=GS G5AHH8/73-205      AC G5AHH8
#=GS G5AHH8/73-205      OS Phytophthora sojae strain P6497
#=GS G5AHH8/73-205      DE Uncharacterized protein
#=GS G5AHH8/73-205      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora sojae; 
#=GS H3GV90/106-238     AC H3GV90
#=GS H3GV90/106-238     OS Phytophthora ramorum
#=GS H3GV90/106-238     DE Uncharacterized protein
#=GS H3GV90/106-238     DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora ramorum; 
#=GS A0A329RX13/73-205  AC A0A329RX13
#=GS A0A329RX13/73-205  OS Phytophthora cactorum
#=GS A0A329RX13/73-205  DE Uncharacterized protein
#=GS A0A329RX13/73-205  DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora cactorum; 
#=GS A0A177WHK9/83-220  AC A0A177WHK9
#=GS A0A177WHK9/83-220  OS Batrachochytrium dendrobatidis JEL423
#=GS A0A177WHK9/83-220  DE RNA polymerase Rpb3/RpoA insert domain-containing protein
#=GS A0A177WHK9/83-220  DR ORG; Eukaryota; Fungi; Chytridiomycota; Chytridiomycetes; Rhizophydiales; Batrachochytrium; Batrachochytrium dendrobatidis; 
#=GS A0A081AYN2/73-205  AC A0A081AYN2
#=GS A0A081AYN2/73-205  OS Phytophthora parasitica P1976
#=GS A0A081AYN2/73-205  DE Uncharacterized protein
#=GS A0A081AYN2/73-205  DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W3A1K3/73-205      AC W3A1K3
#=GS W3A1K3/73-205      OS Phytophthora parasitica P10297
#=GS W3A1K3/73-205      DE Uncharacterized protein
#=GS W3A1K3/73-205      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2P1C7/73-205      AC W2P1C7
#=GS W2P1C7/73-205      OS Phytophthora parasitica
#=GS W2P1C7/73-205      DE Uncharacterized protein
#=GS W2P1C7/73-205      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS V9FUV0/73-205      AC V9FUV0
#=GS V9FUV0/73-205      OS Phytophthora parasitica P1569
#=GS V9FUV0/73-205      DE Uncharacterized protein
#=GS V9FUV0/73-205      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2LQL9/73-205      AC W2LQL9
#=GS W2LQL9/73-205      OS Phytophthora parasitica
#=GS W2LQL9/73-205      DE Uncharacterized protein
#=GS W2LQL9/73-205      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2JJL5/73-205      AC W2JJL5
#=GS W2JJL5/73-205      OS Phytophthora parasitica
#=GS W2JJL5/73-205      DE Uncharacterized protein
#=GS W2JJL5/73-205      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2XRN8/73-205      AC W2XRN8
#=GS W2XRN8/73-205      OS Phytophthora parasitica CJ01A1
#=GS W2XRN8/73-205      DE Uncharacterized protein
#=GS W2XRN8/73-205      DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS F4PDW3/77-214      AC F4PDW3
#=GS F4PDW3/77-214      OS Batrachochytrium dendrobatidis JAM81
#=GS F4PDW3/77-214      DE Uncharacterized protein
#=GS F4PDW3/77-214      DR ORG; Eukaryota; Fungi; Chytridiomycota; Chytridiomycetes; Rhizophydiales; Batrachochytrium; Batrachochytrium dendrobatidis; 
#=GF SQ 23
B3S4F3/84-220              AMAIEKVVIHNNTSIIQDEVLAHRLGLIPIAADPKLFDNF------NPGDTPTNKNSITFTLQIKCIRNRSAHSDA--TDPEELYINSKVTTKDLKLKYNEDQDNAIP----------NKDIRPVHEDILIAKLRPGQEIDLEMICVKGTGADHA
D0NVB2/69-201              TMAIEHVYIWNNSSIIQDEVLAHRLGLIPLNVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKFDPEHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHA
D0NZD7/73-205              TMAIEHVYIWNNSSIIQDEVLAHRLGLIPLNVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKFDPEHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILMAKLRPGQSIALEAHCRKGVGKDHA
B8CCH8/82-236              TMALEHVYMWNNSSLIHDEVLSHRLGLVPLNVDPRLFDEYGVDVDEVGEVAATDRNTIVFRLNEATSLHSSSNQQKTVIDSPHRPFTKHIYTRDLLWAPQGSQLTNFPLHSTGVGSGVGGGIRPISEDILLAKLRPGQVIELEAHARKGVGKDHA
A0A1S8VJF9/83-220          TMAIENVYIMNNTGVMHDEILAQRLGLIPINADPRLFD-F----REGADDPPTDLNTLVFRLQVKCTRNPHASASE--INPTNKYIDSEVLSRHLVWEPQGDQVEKFQ----------DNGIRPYYDEILITKLRPGQEIEAELHCQKGIGKEHA
K3X7N1/75-207              TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF----PDHEEAEATDENTIVFKLDVTCKYDPAHPNDL------SKALHTSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHA
A0A0P1AUD4/73-205          TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQGF----SDNEEAEATDENTIVFKLDVTCKFDPEHPKDP------TKAIFSSVYSRDLEWVPQGNQEERF------------GLIRPVHDDILIAKLRPGQSLALEAHCRKGIGKDHA
A0A369S2G6/84-220          AMAIEKVVIHNNTSIIQDEVLAHRLGLIPIAADPKLFDDF------NPGDTPTNKNSITFTLQIKCIRNRSAHSDA--TDPEELYINSKVTTKDLKLKYNEDQDNAIP----------NKDIRPVHEDILIAKLRPGQEIDLEMICVKGTGADHA
W2PFI9/73-205              TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKFDPEHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHA
A0A0W8DK05/73-205          TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKFDPEHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHA
A0A3R7H6E8/75-207          TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF----PDHEEAEATDENTIVFKLDVTCTYDPEHPKDP------TKALHASVYARDLEWVPQGNQEERF------------GSIRPVDEDILIAKLRPGQSIALEAHCRKGVGKDHA
G5AHH8/73-205              TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKFDPEHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHA
H3GV90/106-238             TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLKVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKYDPEHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILIAKLRPGQSIALEAHCRKGLGKDHA
A0A329RX13/73-205          TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKFDPEHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVYEDILIAKLRPGQSIALEAHCRKGVGKDHA
A0A177WHK9/83-220          TMAIENVYIMNNTGVMHDEVLAQRLGLIPINSDPRLFD-F----REGSDDPPTDLNTLVFRLNIKCTRNPHASASE--INPSNKYIDSDVLSKHLIWEPQGDQVEKFK----------DSPIRPYYDDILITKLRPGQEIEAELHCQKGIGKEHA
A0A081AYN2/73-205          TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKFDPEHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHA
W3A1K3/73-205              TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKFDPEHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHA
W2P1C7/73-205              TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKFDPEHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHA
V9FUV0/73-205              TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKFDPEHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHA
W2LQL9/73-205              TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKFDPQHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHA
W2JJL5/73-205              TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKFDPEHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHA
W2XRN8/73-205              TMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF----PDNEEAEATDENTIVFKLDVTCKFDPEHPKDP------TKAIHSSVYSRDLEWVPQGNQEERF------------GSIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHA
F4PDW3/77-214              TMAIENVYIMNNTGVMHDEVLAQRLGLIPINSDPRLFD-F----REGSDDPPTDLNTLVFRLNIKCTRNPHASASE--INPSNKYIDSDVLSKHLIWEPQGDQVEKFK----------DSPIRPYYDDILITKLRPGQEIEAELHCQKGIGKEHA
#=GC scorecons             79989596849966676998977999979665997495280000345464469749777959565744564444540011104547474846769364677594657100000000001549995678997799999948569567599596799
#=GC scorecons_70          *****_***_**_******************_***_*__*____________**_*****_*___*___________________*_*_*_****_*_***_*___*______________***__************_*_**_**_**_*****
#=GC scorecons_80          *****_*_*_**___*_**********_*___***_*__*____________**_**__*_*___*___________________*___*__*_*_____*_*__________________***__*****_******_*__*__*_**_*_***
#=GC scorecons_90          _**_*_*_*_**_____****__****_*___**__*__*____________*__*___*_*___________________________*____*_______*__________________***___***__******_*__*____**_*__**
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