# STOCKHOLM 1.0
#=GF ID 2.130.10.30/FF/000028
#=GF DE PH, RCC1 and FYVE domains-containing protein 1
#=GF AC 2.130.10.30/FF/000028
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 68.445
#=GS Q947D2/188-463      AC Q947D2
#=GS Q947D2/188-463      OS Arabidopsis thaliana
#=GS Q947D2/188-463      DE PH, RCC1 and FYVE domains-containing protein 1
#=GS Q947D2/188-463      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q947D2/188-463      DR GO; GO:0017112; GO:0035091; GO:0070300; 
#=GS Q9SRZ7/252-466      AC Q9SRZ7
#=GS Q9SRZ7/252-466      OS Arabidopsis thaliana
#=GS Q9SRZ7/252-466      DE F12P19.9 protein
#=GS Q9SRZ7/252-466      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9SRZ7/252-466      DR GO; GO:0005773; GO:0005886; 
#=GS F4K0X5/235-483      AC F4K0X5
#=GS F4K0X5/235-483      OS Arabidopsis thaliana
#=GS F4K0X5/235-483      DE Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
#=GS F4K0X5/235-483      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS F4K0X5/235-483      DR GO; GO:0005886; 
#=GS A0A178WMI8/188-463  AC A0A178WMI8
#=GS A0A178WMI8/188-463  OS Arabidopsis thaliana
#=GS A0A178WMI8/188-463  DE PRAF1
#=GS A0A178WMI8/188-463  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A1P8BC78/241-485  AC A0A1P8BC78
#=GS A0A1P8BC78/241-485  OS Arabidopsis thaliana
#=GS A0A1P8BC78/241-485  DE Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
#=GS A0A1P8BC78/241-485  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS F4K149/246-488      AC F4K149
#=GS F4K149/246-488      OS Arabidopsis thaliana
#=GS F4K149/246-488      DE Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
#=GS F4K149/246-488      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A3P6FWT7/182-454  AC A0A3P6FWT7
#=GS A0A3P6FWT7/182-454  OS Brassica oleracea
#=GS A0A3P6FWT7/182-454  DE Uncharacterized protein
#=GS A0A3P6FWT7/182-454  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; 
#=GS A0A1J3EEK1/187-468  AC A0A1J3EEK1
#=GS A0A1J3EEK1/187-468  OS Noccaea caerulescens
#=GS A0A1J3EEK1/187-468  DE Putative E3 ubiquitin-protein ligase HERC1
#=GS A0A1J3EEK1/187-468  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; 
#=GS V4LBZ3/234-484      AC V4LBZ3
#=GS V4LBZ3/234-484      OS Eutrema salsugineum
#=GS V4LBZ3/234-484      DE Uncharacterized protein
#=GS V4LBZ3/234-484      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS R0HX99/188-464      AC R0HX99
#=GS R0HX99/188-464      OS Capsella rubella
#=GS R0HX99/188-464      DE Uncharacterized protein
#=GS R0HX99/188-464      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS M4CHL5/171-445      AC M4CHL5
#=GS M4CHL5/171-445      OS Brassica rapa subsp. pekinensis
#=GS M4CHL5/171-445      DE Uncharacterized protein
#=GS M4CHL5/171-445      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS D7KTY5/190-463      AC D7KTY5
#=GS D7KTY5/190-463      OS Arabidopsis lyrata subsp. lyrata
#=GS D7KTY5/190-463      DE Zinc finger protein
#=GS D7KTY5/190-463      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A078FNS1/253-497  AC A0A078FNS1
#=GS A0A078FNS1/253-497  OS Brassica napus
#=GS A0A078FNS1/253-497  DE BnaC09g38280D protein
#=GS A0A078FNS1/253-497  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A0D3CW98/182-454  AC A0A0D3CW98
#=GS A0A0D3CW98/182-454  OS Brassica oleracea var. oleracea
#=GS A0A0D3CW98/182-454  DE Uncharacterized protein
#=GS A0A0D3CW98/182-454  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A1J3JVJ2/191-472  AC A0A1J3JVJ2
#=GS A0A1J3JVJ2/191-472  OS Noccaea caerulescens
#=GS A0A1J3JVJ2/191-472  DE Putative E3 ubiquitin-protein ligase HERC1
#=GS A0A1J3JVJ2/191-472  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; 
#=GS A0A0D3EFZ7/232-477  AC A0A0D3EFZ7
#=GS A0A0D3EFZ7/232-477  OS Brassica oleracea var. oleracea
#=GS A0A0D3EFZ7/232-477  DE Uncharacterized protein
#=GS A0A0D3EFZ7/232-477  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A0D3EE22/235-479  AC A0A0D3EE22
#=GS A0A0D3EE22/235-479  OS Brassica oleracea var. oleracea
#=GS A0A0D3EE22/235-479  DE Uncharacterized protein
#=GS A0A0D3EE22/235-479  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS D7M4I7/230-481      AC D7M4I7
#=GS D7M4I7/230-481      OS Arabidopsis lyrata subsp. lyrata
#=GS D7M4I7/230-481      DE Ran GTPase binding protein
#=GS D7M4I7/230-481      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS V4KVE8/245-484      AC V4KVE8
#=GS V4KVE8/245-484      OS Eutrema salsugineum
#=GS V4KVE8/245-484      DE Uncharacterized protein
#=GS V4KVE8/245-484      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS M4CQL5/243-487      AC M4CQL5
#=GS M4CQL5/243-487      OS Brassica rapa subsp. pekinensis
#=GS M4CQL5/243-487      DE Uncharacterized protein
#=GS M4CQL5/243-487      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS R0FDB3/242-490      AC R0FDB3
#=GS R0FDB3/242-490      OS Capsella rubella
#=GS R0FDB3/242-490      DE Uncharacterized protein
#=GS R0FDB3/242-490      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GF SQ 21
Q947D2/188-463              ---PPTDSEKSH----VALDNKNMQTKVSGSDGFRVSVSSAQSSSSHGSAADDSDALGDVYIWGEVICDNVVKVGIDKNASYLTTRTDVLVPKPLESNIVLDVHQIACGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKDVFHPRLVESLTATSSVDFVACGEFHTCAVTLAGELYTWGDGTHNVGLLGHGSDISHWIPKRIAGSLEG-LHVASVSCGPWHTALITSYGRLFTFGDGTFGVLGHGDKETVQYPREVESLSGLRTIAVSCGVWHTAAVVEIIVTQ------
Q9SRZ7/252-466              --------------------------------------------------VTRSNVLKDIMIWGAI-------TGLIDGSK---NQNDALSPKLLESATMFDVQSISLGAKHAALVTRQGEVFCWGNGNSGKLGLKVNIDIDHPKRVESLE-DVAVRSVACSDHQTCAVTESGELYLWGIDGGTIEQSG-----SQFLTRKISDVLGGSLTVLSVACGAWHTAIVTSSGQLFTYGSGTFGVLGHGSLESVTKPKEVESLRRMKVISVSCGPWHTAAIVETA---------
F4K0X5/235-483              ---------------------------GMGMDAFRVSMSSAVSSSSHGSGHDDGDALGDVFIWGEGIGEGVLGGGNRRVGSSFDIKMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQQPKLIDALN-TTNIELVACGEFHSCAVTLSGDLYTWGKG--DFGVLGHGNEVSHWVPKRVNFLLEG-IHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVDSLKGLRTVRAACGVWHTAAVVEV----------
A0A178WMI8/188-463          ---PPTDSEKSH----VALDNKNMQTKVSGSDGFRVSVSSAQSSSSHGSAADDSDALGDVYIWGEVICDNVVKVGIDKNASYLTTRTDVLVPKPLESNIVLDVHQIACGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKDVFHPRLVESLTATSSVDFVACGEFHTCAVTLAGELYTWGDGTHNVGLLGHGSDISHWIPKRIAGSLEG-LHVASVSCGPWHTALITSYGRLFTFGDGTFGVLGHGDKETVQYPREVESLSGLRTIAVSCGVWHTAAVVEIIVTQ------
A0A1P8BC78/241-485          -----------------------------GMDAFRVSLSSAISSSSHGSGHDDGDTLGDVFMWGEGIGEGVLGGGNHRVGSSLEIKMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDALN-TTNIELVACGEYHSCAVTLSGDLYTWGKG--DFGILGHGNEVSHWVPKRVNFLMEG-IHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVDSLKGLRTVRAACGVWHTAAVV------------
F4K149/246-488              ----------------------------------RVSLSSAISSSSHGSGHDDGDTLGDVFMWGEGIGEGVLGGGNHRVGSSLEIKMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDALN-TTNIELVACGEYHSCAVTLSGDLYTWGKG--DFGILGHGNEVSHWVPKRVNFLMEG-IHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVDSLKGLRTVRAACGVWHTAAVVEVM---------
A0A3P6FWT7/182-454          ---KSTEPEKSH----VALDTKMMQTKVSGSDGFRVSVSSAQSSSSHGSGADDSDALGDVYIWGEVICDNVVKVGIDKNASYLTTRTDVLVPKPLESNIVLDVHQIACGVRHAAFVTRQGEVFTWGEESGGRLGHGIGKDVFHPRLVESLT---ACDFVACGEFHTCAVTLSGELYTWGDGTHNVGLLGHGSDVSHWIPKRIAGPLEG-LHVASVTCGPWHTALVTSHGRLFTFGDGTFGVLGHGDKETVQYPREVESLSGLRTIAVSCGVWHTAAVVEIIVTQ------
A0A1J3EEK1/187-468          EVVPVTDSEKPHVVVVVALETKNMQTKVSGSDGFRVSVSSAQSSSSHGSAADDSDALGDVYIWGEVICDNVVKVGIDKNASYLTTRRDVLVPKPLESNIVLDVHQIACGVRHAAFVTRQGDIFTWGEEFGGRLGHGIGKDVFHPRLVESLT---AIDFVTCGEFHTCAVTLSGELFTWGDGTHNVGLLGHGSGISHWIPKRIGGPLQG-LHVASVTCGPWHTALVTSHGRLFTFGDGTFGVLGHGDKETVQYPREVESLSGLRTIAVSCGVWHTAAVVEIIVTQSN----
V4LBZ3/234-484              ----------------------------MGMDAFRVSMSSAVSSSSHGSGHDDGDALGDVFIWGEGIGEGVLGGGNRRVGTSFDIKMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQHPKLIDALN-TTNIELVACGEFHSCAVTLSGDLYTWGKG--DFGVLGHGNEVSHWVPKRVNFLLEG-IHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVLIPREVDSLKGLRTVRAACGVWHTAAVVEVMVG-------
R0HX99/188-464              -EVPSTESEKSH----VALDNKIMQTKVSGSDGFRVSVSSAQSSSSHGSAADDADALGDVYIWGEVICDNVVKVGIDKNASYLTTRTDVLVPKPLESNIVLDVHQIACGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKDVFHPRLVESLTATSSVDFVACGEFHTCAVTLAGELYTWGDGTHNVGLLGHGSDISHWIPKRIAGSLEG-LHVASVSCGPWHTALITSYGRLFTFGDGTFGVLGHGDRETVQYPREVESLSGLRTIAVSCGVWHTAAVVEIIVT-------
M4CHL5/171-445              -SPKSTEPEQSH----VALDTKNMQTKVSGSDGFRVSVSSAQSSSSHGSGADDSDALGDVYIWGEVICDNVVKIGIDKNASYLTTRTDVLVPKPLESNIVLDVHQIACGVRHASFVTRQGEVFTWGEESGGRLGHGIGKDVFHPRLVESLT---SCDFVACGEFHTCAVTLSGELYTWGDGTHNVGLLGHGSDVSHWIPKRIAGPLEG-LHVASVTCGPWHTALVTSHGRLFTFGDGTFGVLGHGDKETVQYPREVESLSGLRTIAVSCGVWHTAAVVEIIVTQ------
D7KTY5/190-463              -----TDTEKSH----VALDNKNMQTKVSGSDGFRVSVSSAQSSSSHGSAADDSDALGDVYIWGEVICDNVVKVGIDKNASYLTTRTDVLVPKPLESNIVLDVHQIACGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKDVFHPRLVESLTATSSVDFVACGEFHTCAVTLAGELYTWGDGTHNVGLLGHGSDISHWIPKRIAGCLEG-LHVASVTCGPWHTALITSYGRLFTFGDGTFGVLGHGDRETVQYPREVESLSGLRTIAVSCGVWHTAAVVEIIVTQ------
A0A078FNS1/253-497          -------------------------------DAFRVSLSSAISSSSHGSGHDDGDALGDVFIWGEGIGEGVLGGGNHIVGSSFEIKMDSLVPKALESSIVLDVQNIACGEQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDALS-TTNIELVACGEYHSCAVSLSGDLYTWGKG--DFGILGHGNEVSHWIPKRVNFLMEG-IHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVDSLKGLRTVRAACGIWHTAAVVEV----------
A0A0D3CW98/182-454          ---KSTEPEKSH----VALDTKMMQTKVSGSDGFRVSVSSAQSSSSHGSGADDSDALGDVYIWGEVICDNVVKVGIDKNASYLTTRTDVLVPKPLESNIVLDVHQIACGVRHAAFVTRQGEVFTWGEESGGRLGHGIGKDVFHPRLVESLT---ACDFVACGEFHTCAVTLSGELYTWGDGTHNVGLLGHGSDVSHWIPKRIAGPLEG-LHVASVTCGPWHTALVTSHGRLFTFGDGTFGVLGHGDKETVQYPREVESLSGLRTIAVSCGVWHTAAVVEIIVTQ------
A0A1J3JVJ2/191-472          ----VTDSEKPHVVVVVALETKNMQTKVSGSDGFRVSVSSAQSSSSHGSAADDSDALGDVYIWGEVICDNVVKVGIDKNASYLTTRRDVLVPKPLESNIVLDVHQIACGVRHAAFVTRQGDIFTWGEEFGGRLGHGIGKDVFHPRLVESLT---AIDFVTCGEFHTCAVTLSGELFTWGDGTHNVGLLGHGSGISHWIPKRIGGPLQG-LHVASVTCGPWHTALVTSHGRLFTFGDGTFGVLGHGDKETVQYPREVESLSGLRTIAVSCGVWHTAAVVEIIVTQSNSSSV
A0A0D3EFZ7/232-477          --------------------------------AFRVSMSSAVSGSSHGSGHNDGDALGDVFIWGEGIGDGVLGGGNRRVGSSFDIKMDSLLPKALESTVVLDVQNIACGGQHAVVVTKQGESFSWGEESEGRLGHGVDSNIQHPKLIDALN-TTNIELVACGEFHSCAVTLSGDLYTWGKG--DFGVLGHGNEVSHWVPKRVNFLLEG-IHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVDSLKGLRTVRAACGVWHTAAVVEVMV--------
A0A0D3EE22/235-479          -----------------------------GMDAFRVSLSSAISSSSHGSGHDDGDALGDVFIWGEGIGEGVLGGGNHIVGSSFEIKMDSLVPKALESSIVLDVQNIACGEQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDALS-TTNIELVACGEYHSCAVSLSGDLYTWGKG--DFGILGHGNEVSHWIPKRVNFLMEG-IHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVDSLKGLRTVRAACGIWHTAAVV------------
D7M4I7/230-481              ---------HGH-------------MRGMGIDAFRVSMSSAVSSSSHGSGHDDGDALGDVFIWGEGIGEGVLGGGNRRVGSSFDMKMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQQPKLIDALN-TTNIELVACGEFHSCAVTLSGDLYTWGKG--DFGVLGHGNEVSHWVPKRVNFLLEG-IHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVDSLKGLRTVRAACGVWHTAAVV------------
V4KVE8/245-484              ----------------------------------RVSLSSAISSSSHGSGHDDGDALGDVFIWGEGIGEGVLGGGNHRVGSSIEVKMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQNPKLIDALN-STNIELVACGEYHSCAVSLSGDLYTWGKG--DFGILGHGNEVSHWVPKRVNFLMEG-IHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFVPREVDSLKGLRTVRAACGVWHTAAVV------------
M4CQL5/243-487              -------------------------------DAFRVSLSSAISSSSHGSGHDDGDALGDVFIWGEGIGEGVLGGGSHRVGSSFEIKMDSLVPKALESSIVLDVQNIACGGQHAVLVTKQGETFSWGEESEGRLGHGVDSNVQHPKLIDALG-TTNIELVACGEYHSCAVSLSGDLYTWGKG--DFGILGHGNEVSHWIPKRVNFLMEG-IHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVDSLKGLRTVRAACGVWHTAAVVEV----------
R0FDB3/242-490              -----------------------------GTDAFRVSLSSAISASSHGSGHDDGDALGDVFMWGEGIGEGVLGGGNHRVGSSLEIKMDSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDALG-TTNIELVACGEYHSCAVSLSGDLYTWGKG--DFGILGHGNEVSHWVPKRVNFLMEG-MHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVDSLKGLRTVRAACGVWHTAAVVEVMV--------
#=GC scorecons              00000110111100001111110111111425457774777376777775477587979868997474547544944545745456495959959995788996597794699569979984959977659899777546737977776940335565989786869997779798799471155757977455987678875347790679597599759996799496999897999999999756693498997995788775669979999989642211000000
#=GC scorecons_70           __________________________________***_***_*******__**_***********_*___*___*_____*____*_*_*_**_***_******_****__**__******_*_*****_*******__**_******_*________*******_*************_*____*_****___********___***_***_**_***_***_***_******************___*__*******_*****___**********____________
#=GC scorecons_80           __________________________________***_***_*_*****__**_******_****_*___*___*_____*______*_*_**_***_*****__****__**__**_***_*_****__******____*_**_*___*________*****_*_***_***_*****_*____*_****___***_***______*__**_*__***_***_***_*_****************___*__****_**_****____**_*******____________
#=GC scorecons_90           ________________________________________________________*_**__**__________*____________*_*_**_***____**__*__*__**__**_***_*_**____****_________*_____*________*_*_*_*_***___*_**_**_________*_____**___**______*___*_*__**__***__**_*_*****_*********____*__****_**__**_____**_*******____________
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