# STOCKHOLM 1.0 #=GF ID 2.130.10.10/FF/000853 #=GF DE WD repeat-containing protein RUP2 #=GF AC 2.130.10.10/FF/000853 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 75.916 #=GS Q9LTJ6/57-381 AC Q9LTJ6 #=GS Q9LTJ6/57-381 OS Arabidopsis thaliana #=GS Q9LTJ6/57-381 DE WD repeat-containing protein RUP1 #=GS Q9LTJ6/57-381 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9LTJ6/57-381 DR GO; GO:0005515; GO:0010114; GO:0010218; GO:0010224; GO:0043496; GO:0080008; #=GS Q9FFA7/10-363 AC Q9FFA7 #=GS Q9FFA7/10-363 OS Arabidopsis thaliana #=GS Q9FFA7/10-363 DE WD repeat-containing protein RUP2 #=GS Q9FFA7/10-363 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9FFA7/10-363 DR GO; GO:0005515; GO:0009658; GO:0010224; GO:0043496; GO:0080008; #=GS A9TWJ6/75-462 AC A9TWJ6 #=GS A9TWJ6/75-462 OS Physcomitrella patens #=GS A9TWJ6/75-462 DE Predicted protein #=GS A9TWJ6/75-462 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; #=GS A9RQB0/1-326 AC A9RQB0 #=GS A9RQB0/1-326 OS Physcomitrella patens #=GS A9RQB0/1-326 DE Predicted protein #=GS A9RQB0/1-326 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; #=GS A0A1D6GYL2/23-390 AC A0A1D6GYL2 #=GS A0A1D6GYL2/23-390 OS Zea mays #=GS A0A1D6GYL2/23-390 DE WD repeat-containing protein RUP2 #=GS A0A1D6GYL2/23-390 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS B9I4A1/30-386 AC B9I4A1 #=GS B9I4A1/30-386 OS Populus trichocarpa #=GS B9I4A1/30-386 DE Uncharacterized protein #=GS B9I4A1/30-386 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa; #=GS V4KX13/26-369 AC V4KX13 #=GS V4KX13/26-369 OS Eutrema salsugineum #=GS V4KX13/26-369 DE Uncharacterized protein #=GS V4KX13/26-369 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; #=GS A0A078FQV5/13-366 AC A0A078FQV5 #=GS A0A078FQV5/13-366 OS Brassica napus #=GS A0A078FQV5/13-366 DE BnaA09g05170D protein #=GS A0A078FQV5/13-366 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GS R0EXE3/55-381 AC R0EXE3 #=GS R0EXE3/55-381 OS Capsella rubella #=GS R0EXE3/55-381 DE Uncharacterized protein #=GS R0EXE3/55-381 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; #=GS I1HWC1/56-395 AC I1HWC1 #=GS I1HWC1/56-395 OS Brachypodium distachyon #=GS I1HWC1/56-395 DE Uncharacterized protein #=GS I1HWC1/56-395 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; #=GS D7MRP4/56-380 AC D7MRP4 #=GS D7MRP4/56-380 OS Arabidopsis lyrata subsp. lyrata #=GS D7MRP4/56-380 DE Uncharacterized protein #=GS D7MRP4/56-380 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS A0A3P6DAY1/11-361 AC A0A3P6DAY1 #=GS A0A3P6DAY1/11-361 OS Brassica oleracea #=GS A0A3P6DAY1/11-361 DE Uncharacterized protein #=GS A0A3P6DAY1/11-361 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; #=GS A0A0D3E1J3/11-361 AC A0A0D3E1J3 #=GS A0A0D3E1J3/11-361 OS Brassica oleracea var. oleracea #=GS A0A0D3E1J3/11-361 DE Uncharacterized protein #=GS A0A0D3E1J3/11-361 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; #=GS D7M2C6/15-360 AC D7M2C6 #=GS D7M2C6/15-360 OS Arabidopsis lyrata subsp. lyrata #=GS D7M2C6/15-360 DE Nucleotide binding protein #=GS D7M2C6/15-360 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS R0GVD0/12-366 AC R0GVD0 #=GS R0GVD0/12-366 OS Capsella rubella #=GS R0GVD0/12-366 DE Uncharacterized protein #=GS R0GVD0/12-366 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; #=GF SQ 15 Q9LTJ6/57-381 ---------------DLSLSAVV-------SSASTGSDAIGAIEFDPTGEIIATGGIARKIRSYRLSSLLE-----------------------------------SRDDHVTASESYICTPAKLSSLKWRPD--FSGRVIGSGDYDGVVTEYDVEK-QVPVSERDEHGGRRIWSVDYTLYNG-SLIGASGSDDGTVQMWDPRNGG-TLEETVRPGG--GAAICSVEFDPFGGSSIAVGCADRNAYVYDIRRLV-DPLIV--LDGHTKTVTYARFM-----DSHTIVTGSTDGSLKQWDI---------------DNGRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSENNQVFVYDKRWEEPVWVCGLGH--------TNRF-------------GSDRRFVSSVCLRQVDE-----DWCTLVAGGSDGALEIFS- Q9FFA7/10-363 QQEQAQQQEEARYEWDLSLSTVVS------SSSSSASDVIGAIEFDPTDNIVATAGISRKIRFYGLPSLLRNNAV-------------------------S-GTGVSFVDQATACEYYICTPAKLSSLRWRPG--SGGRVIGSGDYDGVVMEYDLEK-RTPVFERDEHGGRRVWSVDYTRHGGASTVGASGSDDGTMQVWDPRCPPEESVGVVRPAGICRSAVCCVEFDPSGGPAVAVGCADRKGYVYDIRKLV-DPALT--LQGHTKTVSYVRFL-----DGGTVVTAGTDGCLKLWSV---------------EDG-RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKPVWVDGF-E--------PVGM-----------NSGSDKRFVSSVCWRQSGV-----DQCTLVAGGSDGVLQVYV- A9TWJ6/75-462 ------HGEDHRSSWDFKVVASVKS----QNRNLTSTDVIGTIAFEKTNEYFATGGIARKIRVYSYSQLVSGVSSTYEDEDEDEDEEESLDYLKQRRLRKR-RASTSEIDHARCCVQEVCTPAKLSSLQWYQE---RPNLIACGDYDGVVAEWDLER-NCTISERDENGGQRIWSIDYSKDF--PNLIASASDDGTVRIWDRNSE--QSAAILSHPT--YSPICCAEFGPVSSSLIALASADSNVYLYDTRWLS-TPLLT--LAHHKRAASYVRFL-----TRHSLVSSSIDSSVKLWDITSLSSTSERAASVIYQHCDTLVKSFGSHYNVRNFTGLSVRSEGGLIACGSETNQAFVYDSQTSNPILMHSFDYKPTSSNMNPIL----------------GSLIVSAVCWRTKSN-----D-CTLVAANSDGVLRVLSG A9RQB0/1-326 ----------------------------------TSTDIIGTIAFEKTHEYFATGGIARKIRVYAYSPLVSGLTSAI------------------------------DIDHARCCVQEVCTPAKLSSLQWHQE---RPNVIACGDYDGVVAEWDVER-MCAICERDENGGQRIWSIDYSKDF--PDLIASASDDGTVRMWDQSSE--QSVAIIFHST--FSPICCAEFGPASSSLIALASADSNVYLYDTRWLS-TPLLT--LAHHKRATSYVRFL-----DSHRLVSSSIDSSVKLWDVQSMSCSSCRTAPVASQRCNAPVKSFDSHYNVRNFTGLSVRGEDGLIACGSETNQAFVYDSQKCSPILSHSFDY------YNPAV------------------LIVSAVCWRAKPD-----D-CTLVAANSDGVLRLLS- A0A1D6GYL2/23-390 ------------CEWDFRLAATVPT-----TALPGASDAIGSVDLDPTGRLLATGGIARKIRMYDVPSMLLPPPDSA----------------------GP--------APAPAPAACICVPAKLSSVRWRPD---GGAAVGCGDYDGVVTEYDAER-GVASWERDEHGGRRVWSLDYAPPGAPAAMAASGSDDRTAHVWDPRAPS-CGWATARA----GAAVLCVEFDPSGAPHLAVGSADRRAHVYDVRALGRGAVHVARMEGHARAVTYVRWAGPGPAERRRVVTSAADGTHRLWEW-PPGTSEQG------AAA-REVRSYSGHASARSFVGMGVWRGAGLVASGSESNHVFVYDLRWAKPIWVQPFAS------HGPVTIGPEQVDAHAPAAGAGAGGFVSAVAWRQGSH-SDDPDGGALVAGGSDGVLKVFTC B9I4A1/30-386 --EQEQQEEKARCEWDFSLTTIVSSGNNNISSTPAISDALGVIEFDQTNSIIATGGIARKIRIYNFKSLFAHENTSQ-----------------------N-AHEITCLDHARACDYYICTPAKLSSIRWKPS--SDGRVLGSGDYDGVVMEYCLER-RIPIFERDEHGGRRVWSVDYSHWD--PVLGASGSDDGTMQMWDTRCESGEGVATVQP-GVGRSAVCCVEFNPFGGPIVAVGCADRRVYGYDIRMTG-DPVFV--LDGHRKTVTYIKFL-----DNVTLVSASIDGCLKLWDS---------------DNS-NVIRSYKGHVNSRSFIGLSVWRNGGLLGCGSENNKVFVYDRRWGEPIWVHES-N--------PVG------------RDGCGGGFVSSVCWRQVEE-----DQCTLVAGGSDGDLQVFQG V4KX13/26-369 ------------YEWDISLSTVV-------SSSSSASDVIGAIEFDPTDNILATAGISRKIRFYGLPSLLRANAGIS----------------------GG-GGGVSFVDHTTACEYYICTPAKLSSLRWRPG--SGGRVIGSGDYDGVVTEYDLEK-RTPVFERDEHGGRRVWSVDYTRHGGAAAVGASGSDDGTMQVWDPRCPPEETVGVVRPAGHCRSAVCCVEFDPSGGPAVAVGCADRRGYVYDMRKLV-DPALT--LQGHSKTVSYVRFL-----DGGTVVTAGTDGCLKMWSV---------------EDG-CVIRTYEGHVNSRNFVGLSVWRNGALFGCGSENNRVFVYDKRWGKPVWVDGY-E--------PVGI-----------SSGSDKRFVSSVCWRQSGV-----DQCTLVAAGSDGVLQVYV- A0A078FQV5/13-366 ----QEQEEEARHEWDLSLSTVVS------SSSSSASDVVGAIEFDPTDNILATAGISRKIRFYGLASLLRNTAGVC----------------------GGAGGGVSFVDQVTACEYYICTPAKLSSLRWRPG--SCSRVIGSGDYDGVVTEYDLEK-RTPVFERDEHGGRRVWSVDYTRHGGAAAVGASGSDDGTMQVWDPRCPPEESVGVVRPAGLCRSAVCCVEFDPSGGHAVAVGCADRRGYVYDMRKLV-DPALT--LQGHTKTVSYVRFL-----DGGTVVTAGTDGCLKLWSV---------------EDG-RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWRKPVWVDGF-E--------PVGM-----------TSGSDKRFVSSVCWRQSGV-----DQCTLVAGGSDGVLQVYV- R0EXE3/55-381 ---------------DLSLSAVV-------SSASTGSDSIGAIEFDPTGDIIATGGIARKIRSYRLSSLLRSS---------------------------------SRDDHARASESCICTPAKLSSLKWRPD--LSGRVIGSGDYDGVVTEYDVEK-QVPIFERDEHGGRRIWSVDYTLHNG-SLVAASGSDDGTVQMWDPRNGG-SLEETVRPGG--GAAVCSVEFDPLGGSSLAVGCADRNAYVYDIRRLV-DPLLV--LDGHTKTVTYARFM-----DPRTIVTGSTDGSLKQWDI---------------DNGRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSENNQVFVYDKRWEEPVWTCGLGQ--------PDRF-------------GSDRRFVSSVCLRQVDE-----DWCTLVAGGSDGVLEIFS- I1HWC1/56-395 -------------EWEFRLAATVPS-----PAMVGASDAIGSVDFDPSGSLLATAGIARKVRIYNAATLLLDQQSS-------------------------------------SPAACICVPAKLSSVRWRPDSSSSGRFVGCGDYDGVVTEYDLDRGGAATWERDEHSGRRVWALDYSP---SSSMAASGSDDRTAHVWDPRSPA-AGWATAKA----SGPVLCVEFDPSGAPRLAVGSADRRAALYDVRNMGRGPVAT--AEGHARAVTYVRWA-----PGDRLVTSAADGTHRLWDWAAAGAQGMV------GPG-REVRAYSGHVSGRSFVGMGLWRGPGLVACGSESNHVFVYDLRWPKPVWVHPFFV--------PSG--------------DGGGGFVSAVAWRQQAEDGGGGDAGVLVAGGSDGVLKLFTC D7MRP4/56-380 ---------------DLSLSAVV-------SSASTGSDAIGAIEFDPTGEIIATGGIARKIRSYRLSSLLE-----------------------------------SRDDHVTASDSCIYTPAKLSSLKWRPD--LSGRVIGSGDYDGVVTEYDVEK-QVPVSERDEHGGRRIWSVDYTLYNG-SLIGASGSDDGTVQMWDPRNGG-TLEETVRPGG--GAAICSVEFDPFGGSSIAVGCADRNAYVYDIRRLV-DPLIV--LDGHTKTVTYARFM-----DSHTIVTGSTDGSLKQWNI---------------DNGRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSENNQVFVYDKRWEEPVWVCGLGQ--------PDRF-------------GADRRFVSSVCLRQVDE-----DWCTLAAGGSDGALEIFS- A0A3P6DAY1/11-361 -------EEEARHEWDLSLSTVVS------SSSSSASDVVGAIEFDPTDNILATAGISRKIRFYGLTSLLRTTAGVC----------------------GGAGGGVNFVDQTNACEYYICTPAKLSSLRWKPG--SCGRVIGSGDYDGVVTEYDLEK-RTPVFERDEHGGRRVWSVDYTRHGGAAAVGASGSDDGTMQVWDPRCPPEESIGVVRPAGLCRSAVCCVEFDPTGGHAVAVGCADRRGYVYDMRKLV-DPALT--LQGHTKTVSYVRFL-----DGGTVVTAGTDGCLKLWSV---------------EDG-RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWRKPVWVDGF-E--------PVGL-----------TSASDKRFVSSVCWRQSGV-----DQCTLVAGGSDGVLQVYV- A0A0D3E1J3/11-361 -------EEEARHEWDLSLSTVVS------SSSSSASDVVGAIEFDPTDNILATAGISRKIRFYGLTSLLRTTAGVC----------------------GGAGGGVNFVDQTNACEYYICTPAKLSSLRWKPG--SCGRVIGSGDYDGVVTEYDLEK-RTPVFERDEHGGRRVWSVDYTRHGGAAAVGASGSDDGTMQVWDPRCPPEESIGVVRPAGLCRSAVCCVEFDPTGGHAVAVGCADRRGYVYDMRKLV-DPALT--LQGHTKTVSYVRFL-----DGGTVVTAGTDGCLKLWSV---------------EDG-RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWRKPVWVDGF-E--------PVGL-----------TSASDKRFVSSVCWRQSGV-----DQCTLVAGGSDGVLQVYV- D7M2C6/15-360 --------EEAKHEWDLSLSTVVS------SSSSSASDVIGAIEFDPTDNIVATAGISRKIRFYGLPSLLRTNAV-------------------------S-GTGVSFVDQATACEYYICTPAKLSSLRWRPG--SGSRVIGSGDYDGVVTEYDLEK-RTPVFERDEHGGRRVWSVDYTRHGDASAVGASGSDDGTMQVWDPRCPPEESVSVVRPSGICRSAVCCVEFDPSGGPTVAVGCADRKGYVYDIRKLV-DPALT--LQGHTKTVSYVRFL-----DGCTVVTAGTDGCLKLWSV---------------EDG-RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKPVWVDGF-E--------PVGM-----------NSGSDKRFVSSVCWRQSGV-----DQCTLVAGGSDGVLQVYV- R0GVD0/12-366 --EEEQEQEEARYEWDLSLSTVVS------SSSSSASDVIGAIEFDPTDNIVATAGISRKIRFYGLPSLLRTSAAVS----------------------GG-GGGVSFVDQATACEYYICTPAKLSSLRWRPG--SGGRVIGSGDYDGVVTEYDLEK-RTPVFERDEHGGRRVWSVDYTRNGGGSVVGASGSDDGTMQVWDPRCPPEESVGVVRPAGICRSAVCCVEFDPSGGPAVAVGCADRKGYVYDMRKLV-DPALT--LEGHTKTVSYVRFL-----DGGTVVTAGTDGCLKLWSV---------------EDG-RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNKVFVYDKRWGKPVWIDGF-E--------PVGM-----------NSGSDKRFVSSVCWRQSGV-----DQCTLVAGGSDGVLQVYV- #=GC scorecons 0000000011111346446454720000004434457957957587584455996996998949444686322222100000000000000000000001101111312654365434787999999669565002455677699999996967687044554999978979798699533321535499799979566996644213434555524013567677996937553597769965475995937405845600746947666968650000064355965559755769540000000000000004450547757479574969697786646695469995957999947635976645603000000008441000000000001133434699696696343000009267989669996956640 #=GC scorecons_70 _______________*__*___*_____________**_**_*_**_*____**_*******_*____**_______________________________________*________************_*________**_*******_***_**______***************__________********_*_**_*__________________*********_*____***_***__*_**_*_*___*_____*_**_***_****___________**___**__*_*_______________________**_*_**_*_**********__**__****_*_*****_*___***______________*_____________________***_*****________*_************_*___ #=GC scorecons_80 ______________________*______________*_**_*_**_*____**_**_****_*____*_________________________________________________**_******__*__________*__*******_*_*_*_______****_****_**_**__________**_***_*___**_____________________*_*_**_*______**__**_____**_*_*___*________*_____*_*____________*____*___*_*________________________*_*__*_*_*_*_****_____*___***_*__****_*___**_______________*______________________**_*__*_________*___***__***_*_____ #=GC scorecons_90 _____________________________________*__*___*_______**_**_****_*____*__________________________________________________*_******__*_____________*******_*___*_______****__*_*_*__**__________**_***_*___**_________________________**_*______*___**_____**_*______________*_____*_*____________*____*_____*_____________________________*___*_*_*__*_____*___***_*__****_____*________________*______________________**_*__*_________*___***__***_*_____ //