# STOCKHOLM 1.0
#=GF ID 2.130.10.10/FF/000811
#=GF DE Intraflagellar transport 140
#=GF AC 2.130.10.10/FF/000811
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 62.857
#=GS J9P301/17-260       AC J9P301
#=GS J9P301/17-260       OS Canis lupus familiaris
#=GS J9P301/17-260       DE Uncharacterized protein
#=GS J9P301/17-260       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis; Canis lupus; Canis lupus familiaris; 
#=GS F6PNF6/260-447      AC F6PNF6
#=GS F6PNF6/260-447      OS Xenopus tropicalis
#=GS F6PNF6/260-447      DE Intraflagellar transport 140
#=GS F6PNF6/260-447      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana; Xenopus tropicalis; 
#=GS F7CMD5/199-461      AC F7CMD5
#=GS F7CMD5/199-461      OS Monodelphis domestica
#=GS F7CMD5/199-461      DE Intraflagellar transport 140
#=GS F7CMD5/199-461      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Didelphimorphia; Didelphidae; Didelphinae; Monodelphis; Monodelphis domestica; 
#=GS F7GBP7/173-463      AC F7GBP7
#=GS F7GBP7/173-463      OS Ornithorhynchus anatinus
#=GS F7GBP7/173-463      DE Uncharacterized protein
#=GS F7GBP7/173-463      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus; Ornithorhynchus anatinus; 
#=GS A0A0D9RGL3/169-471  AC A0A0D9RGL3
#=GS A0A0D9RGL3/169-471  OS Chlorocebus sabaeus
#=GS A0A0D9RGL3/169-471  DE Uncharacterized protein
#=GS A0A0D9RGL3/169-471  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Chlorocebus; Chlorocebus sabaeus; 
#=GS H2QAA4/170-469      AC H2QAA4
#=GS H2QAA4/170-469      OS Pan troglodytes
#=GS H2QAA4/170-469      DE Intraflagellar transport 140
#=GS H2QAA4/170-469      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan troglodytes; 
#=GS A0A2K5JFA6/171-464  AC A0A2K5JFA6
#=GS A0A2K5JFA6/171-464  OS Colobus angolensis palliatus
#=GS A0A2K5JFA6/171-464  DE Uncharacterized protein
#=GS A0A2K5JFA6/171-464  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Colobinae; Colobus; Colobus angolensis; Colobus angolensis palliatus; 
#=GS H2NPP9/169-461      AC H2NPP9
#=GS H2NPP9/169-461      OS Pongo abelii
#=GS H2NPP9/169-461      DE IFT140 isoform 2
#=GS H2NPP9/169-461      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Ponginae; Pongo; Pongo abelii; 
#=GS A0A2K5WMZ1/169-471  AC A0A2K5WMZ1
#=GS A0A2K5WMZ1/169-471  OS Macaca fascicularis
#=GS A0A2K5WMZ1/169-471  DE Uncharacterized protein
#=GS A0A2K5WMZ1/169-471  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca fascicularis; 
#=GS A0A2K5MHL8/169-470  AC A0A2K5MHL8
#=GS A0A2K5MHL8/169-470  OS Cercocebus atys
#=GS A0A2K5MHL8/169-470  DE Uncharacterized protein
#=GS A0A2K5MHL8/169-470  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Cercocebus; Cercocebus atys; 
#=GS G3QSX5/169-442      AC G3QSX5
#=GS G3QSX5/169-442      OS Gorilla gorilla gorilla
#=GS G3QSX5/169-442      DE Intraflagellar transport 140
#=GS G3QSX5/169-442      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Gorilla; Gorilla gorilla; Gorilla gorilla gorilla; 
#=GS F6Q6W1/169-464      AC F6Q6W1
#=GS F6Q6W1/169-464      OS Macaca mulatta
#=GS F6Q6W1/169-464      DE Uncharacterized protein
#=GS F6Q6W1/169-464      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta; 
#=GS A0A2K6AMP7/169-470  AC A0A2K6AMP7
#=GS A0A2K6AMP7/169-470  OS Macaca nemestrina
#=GS A0A2K6AMP7/169-470  DE Uncharacterized protein
#=GS A0A2K6AMP7/169-470  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca nemestrina; 
#=GS A0A2R9C500/169-470  AC A0A2R9C500
#=GS A0A2R9C500/169-470  OS Pan paniscus
#=GS A0A2R9C500/169-470  DE Uncharacterized protein
#=GS A0A2R9C500/169-470  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan paniscus; 
#=GS K7ANH9/170-469      AC K7ANH9
#=GS K7ANH9/170-469      OS Pan troglodytes
#=GS K7ANH9/170-469      DE IFT140 isoform 1
#=GS K7ANH9/170-469      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan troglodytes; 
#=GS A0A2K6AMJ1/169-460  AC A0A2K6AMJ1
#=GS A0A2K6AMJ1/169-460  OS Macaca nemestrina
#=GS A0A2K6AMJ1/169-460  DE Uncharacterized protein
#=GS A0A2K6AMJ1/169-460  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca nemestrina; 
#=GS A0A2K5WMU3/169-471  AC A0A2K5WMU3
#=GS A0A2K5WMU3/169-471  OS Macaca fascicularis
#=GS A0A2K5WMU3/169-471  DE Uncharacterized protein
#=GS A0A2K5WMU3/169-471  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca fascicularis; 
#=GF SQ 17
J9P301/17-260               ------------------------------SQEGLSFFVSLMDGTVLYVDEKGKSTQVASTDSSIQTLFYIEKREALVVVTQNLLLSLYVVRPEGKAEEVMKVKLSGKTGCRADIALIEGSVLVTAIGEPVLRFWDLEGGENYMLSPAEKFGFEKAENINCVSYCKTKGLLAAGTDKGRVAIWRKLP-GPQSSRVAEGKDRWIFQTPSELEGNITQIKWGSRKSLLAVNNMSSVVILSEQAMSSHFHQQVAVVQTSPSLLSVSFLSTGVTHSLRI-----------------------------
F6PNF6/260-447              -------------------------------------------------------------------------------------------SQEGNAEEISKVKLSGKTGQAADIHWVDNSLLITATGENVIRLWDLEREDNYVLSLDDQLGYDFAETLNCISYCSAKAILAAGTNKGRVAMWSRVTSHGQKAIRTDGKGTWKLQTPTELEENIMQIQWGSSKNFLAINNFSSVVVLSEQVMSAHFSQQVAAIQVAPTQLNLTYFSTETTHNLQTDMYI-------------------------
F7CMD5/199-461              ------------------------------SQEGLSFFVSLVDGTVHYVDEKGKTSRVVSVDSPIQMMFYIEKREVLVVVTENLLLSLYTVTPEGDAEEILKVKLSGKTGHSADIILIEGSLLVTAIGETVLRLWDLERGENYVLSPEEKFGFETGMNINCVSYCKAKGILAAGTNKGQVAMWKKVPVSSQSTLILEGKDKWTLQTPTELEGNITQIKWGSRKNLLAVNNISSVIILSEQAMSSHFHQQVAVVQVSPNLLNVTFFFTGMTFSLRTEMHISGAFATKDAVAVWN-----------
F7GBP7/173-463              ----AVSGDERALDMFNWKKGGMGRLLRLGPQDGLSFFIGLVDGTVHFVDEKGKTSRALSADSTLQMLLYIEKREVLVVVTENLLLSLYTVSLEGEAVETLKVKLSGKTGHSADITLIEGSLLVTAIGETVLRFWDLERGENYVLSPDEKLGFEAGEGINCVSYCGAKGLLAAGTNRGRVAMWKKVALVDQSTQALEGKDRWSLQTPTELEGNITQIKWGSRKNLLAANNLSSVVILSEQATSSHFHQQVAVVQVSPSLLNVTFLFSGVTYNLRTDMHISGTFATKDAVAVWNGK---------
A0A0D9RGL3/169-471          LAKAAVSGDEKALDMFNWKKSSSGSLLKMGSQEGLSFFVSLMDGTVHYVDEKGKTTQVVSADSAIQMLFYMEKREALVVVTENLRLSLYTVPPEGEAEEVMKVKLSGKTGRRADIALIEGSLLVMAVGETALRFWDIERGENYILSPDEKFGFEKGENINCVCYCQVKGLLAAGTDRGRVAMWRKVP-GFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNNVISVAILSEQAMSSHFHQQVAAVQVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQVAIFELSG
H2QAA4/170-469              -AKAAVSGDEKALDMFNWKKSSSGSLLKMGSHEGLLFFVSLMDGTVHYVDEKGKTTQVVSADSTIQMLFYMEKREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGKTGRRADIALIEGSLLVMAVGEAALRFWDIERGENYILSPDEKFGFEKGENMNCVCYCKVKGLLAAGTDRGRVAMWRKVP-DFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNNVISVAILSERAMSSHFHQQVAAVQVSPRLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQVAIFEL--
A0A2K5JFA6/171-464          --KAAVSGDEKALDMFNW-KSSSGSLLKMGSQEGLSFFVSLMDGTVHYVDEKGKTTQVLSADSAIQMLFYMEKREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGKTGCRADIALIEGSLLVMAVRETALRFWDIERGENYILSPDEKFGFEKGENINCVCYCQVKGLLAAGTDRGRVAMWRKVP-GFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNNVISVAILSEQAMSSHFHQQVAAVQVSPSLLNVCFLSMGVAHSLRTDMHISGVFATKDAVAVWNGRQVA------
H2NPP9/169-461              LAKAAVSGDEKALDMFNWKKSSSGSLLKMGSHEGLLFFVSLMDGTVHYVDEKGKTTQVVSADSAIQMLFYMEKREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGKTGRQADIALIEGSLLVMAIGEAALRFWDIERGENYILSPDEKFGFEKGENMNCVCYCKVKGLLAAGTDRGRVAMWRKVP-GFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNNVISVAILSERAMSSHFHQQVAAVQVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNG----------
A0A2K5WMZ1/169-471          LAKAAVSGDEKALDMFNWKKSSSGSLLKMGSQEGLSFFVSLMDGTVHYVDEKGKTTQVVSADSAIQMLFYMEKREALVVVTENLRLSLYTVPPEGEAEEVMKVKLSGKTGRRADIALIEGSLLVMAVGETALRFWDIERGENYILSPDEKFGFEKGENINCVCYCQVKGLLAAGTDRGRVAMWRKVP-GFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNNVISVAILSEQAMSSHFHQQVAAVQVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAIAVWNGRQVAIFELSG
A0A2K5MHL8/169-470          LAKAAVSGDEKALDMFNWKKSSSGSLLKMGSQEGLSFFVSLMDGTVHYVDEKGKTTQVVSADSAIQMLFYMEKREALVVVTENLRLSLYTVPPEGEAEEVMKVKLSGKTGRRADIALIEGSLLVMAVGETALRFWDIERGENYILSPDEKFGFEKGENINCVCYCQVKGLLAAGTDRGRVAMWRKVP-GFLGSPGAEGKDRWTLQTPTELQGNITQIQWGSRKNLLAVNNVISVAILSEQAMSSHFHQQVAAVQVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQVAIFELA-
G3QSX5/169-442              LAKAAVSGDEKALDMFNWKKSSSGSLLKMGSHQGLLFFVSLMDGTVHYVDEKGKTTQVVSADSTIQMLFYMEKREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGKTGRRADIALIEGSLLVMAVGEAALRFWDIERGENYILSPDEKFGFEKGENMNCVCYCKVKGLLAAGTDRGRVAMWRKVP-DFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNNVISVAILSERAMSSHFHQQVAAVQVSPSLLNVCFLSTGVAHSLRT-----------------------------
F6Q6W1/169-464              LAKAAVSGDEKALDMFNWKKSSSGSLLKMGSQEGLSFFVSLMDGTVHYVDEKGKTTQVVSADSAIQMLFYMEKREALVVVTENLRLSLYTMPPEGEAEEVMKVKLSGKTGRRADIALIEGSLLVMAVGETALRFWDIERGENYILSPDEKFGFEKGENINCVCYCQVKGLLAAGTDRGRVAMWRKVP-GFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNNVISVAILSEQAMSSHFHQQVAAVQVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQV-------
A0A2K6AMP7/169-470          LAKAAVSGDEKALDMFNWKKSSSGSLLKMGSQEGLSFFVSLMDGTVHYVDEKGKTTQVVSADSAIQMLFYMEKREALVVVTENLRLSLYTVPPEGEAEEVMKVKLSGKSGRRADIALIEGSLLVMAVGETALRFWDIERGENYILSPDEKFGFEKGENINCVCYCQVKGLLAAGTDRGRVAMWRKVP-GFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNNVISVAILSEQAMSSHFHQQVATVQVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQVAIFELS-
A0A2R9C500/169-470          LAKAAVSGDEKALDMFNWKKSSSGSLLKMGSHEGLLFFVSLMDGTVHYVDEKGKTTQVVSADSTIQMLFYMEKREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGKTGRRADIALIEGSLLVMAVGEAALRFWDIERGENYILSPDEKFGFEKGENMNCVCYCKVKGLLAAGTDRGRVAMWRKVP-DFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNNVISVAILSERAMSSHFHQQVAAVQVSPRLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQVAIFELS-
K7ANH9/170-469              -AKAAVSGDEKALDMFNWKKSSSGSLLKMGSHEGLLFFVSLMDGTVHYVDEKGKTTQVVSADSTIQMLFYMEKREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGKTGRRADIALIEGSLLVMAVGEAALRFWDIERGENYILSPDEKFGFEKGENMNCVCYCKVKGLLAAGTDRGRVAMWRKVP-DFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNNVISVAILSERAMSSHFHQQVAAVQVSPRLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQVAIFEL--
A0A2K6AMJ1/169-460          LAKAAVSGDEKALDMFNWKKSSSGSLLKMGSQEGLSFFVSLMDGTVHYVDEKGKTTQVVSADSAIQMLFYMEKREALVVVTENLRLSLYTVPPEGEAEEVMKVKLSGKSGRRADIALIEGSLLVMAVGETALRFWDIERGENYILSPDEKFGFEKGENINCVCYCQVKGLLAAGTDRGRVAMWRKVP-GFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNNVISVAILSEQAMSSHFHQQVATVQVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWN-----------
A0A2K5WMU3/169-471          LAKAAVSGDEKALDMFNWKKSSSGSLLKMGSQEGLSFFVSLMDGTVHYVDEKGKTTQVVSADSAIQMLFYMEKREALVVVTENLRLSLYTVPPEGEAEEVMKVKLSGKTGRRADIALIEGSLLVMAVGETALRFWDIERGENYILSPDEKFGFEKGENINCVCYCQVKGLLAAGTDRGRVAMWRKVP-GFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNNVISVAILSEQAMSSHFHQQVAAVQVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAIAVWNGRQVAIFELSG
#=GC scorecons              1222333333233333332322232332235455535555545555455555555445454553554555455554555555553555545569949796599999998944999567769797595895679699697779969967776977467669976994597699999679899895776043545445799769479997996799699699969779979955995799977897996999967977956977576677667697756563323333333333321111000000
#=GC scorecons_70           _____________________________________________________________________________________________**_****_*********__***_********_*_**__***********************_***_***_**__****************_***_________****_*_***************************__**_****************_*****_****_*****_******_____________________________
#=GC scorecons_80           _____________________________________________________________________________________________**_***__*********__***__**_****_*_**__**_**_**_***_**__**_***__*__***_**__*__*****__******_**__________***__*_*******__**_**_***_*****_**__**_*****_**_**_****_***_*__***_*__*___*_***_____________________________
#=GC scorecons_90           _____________________________________________________________________________________________**_*_*__*********__***_____*_*__*_**___*_**_*___**_**_____*_______**__**__*__*****__******______________**__*__***_**__**_**_***_*__**_**__**__***___*_**_****__*__*__*____________*_______________________________
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