# STOCKHOLM 1.0
#=GF ID 2.130.10.10/FF/001109
#=GF DE Cytoplasmic dynein 1 intermediate chain
#=GF AC 2.130.10.10/FF/001109
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 32.819
#=GS Q24246/225-498      AC Q24246
#=GS Q24246/225-498      OS Drosophila melanogaster
#=GS Q24246/225-498      DE Cytoplasmic dynein 1 intermediate chain
#=GS Q24246/225-498      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q24246/225-498      DR GO; GO:0000226; GO:0001754; GO:0005868; GO:0007018; GO:0007051; GO:0007291; GO:0007349; GO:0008088; GO:0032991; GO:0034452; GO:0034501; GO:0045503; GO:0045504; GO:0051642; 
#=GS Q7KWG3/20-332       AC Q7KWG3
#=GS Q7KWG3/20-332       OS Drosophila melanogaster
#=GS Q7KWG3/20-332       DE Sperm-specific dynein intermediate chain 2, isoform A
#=GS Q7KWG3/20-332       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q7KWG3/20-332       DR GO; GO:0036126; 
#=GS X2JCQ7/19-324       AC X2JCQ7
#=GS X2JCQ7/19-324       OS Drosophila melanogaster
#=GS X2JCQ7/19-324       DE Sperm-specific dynein intermediate chain 2, isoform B
#=GS X2JCQ7/19-324       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS X2JCQ7/19-324       DR GO; GO:0036126; 
#=GS Q8IRZ3/20-332       AC Q8IRZ3
#=GS Q8IRZ3/20-332       OS Drosophila melanogaster
#=GS Q8IRZ3/20-332       DE GH16657p
#=GS Q8IRZ3/20-332       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS F0JAG7/68-338       AC F0JAG7
#=GS F0JAG7/68-338       OS Drosophila melanogaster
#=GS F0JAG7/68-338       DE GH08687p
#=GS F0JAG7/68-338       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS D6X3Z7/198-460      AC D6X3Z7
#=GS D6X3Z7/198-460      OS Tribolium castaneum
#=GS D6X3Z7/198-460      DE Cytoplasmic dynein 1 intermediate chain-like Protein
#=GS D6X3Z7/198-460      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS A0A0R1ECH4/70-333   AC A0A0R1ECH4
#=GS A0A0R1ECH4/70-333   OS Drosophila yakuba
#=GS A0A0R1ECH4/70-333   DE Uncharacterized protein, isoform L
#=GS A0A0R1ECH4/70-333   DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GS B4PY10/226-496      AC B4PY10
#=GS B4PY10/226-496      OS Drosophila yakuba
#=GS B4PY10/226-496      DE Uncharacterized protein, isoform B
#=GS B4PY10/226-496      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GS B3NWG7/226-496      AC B3NWG7
#=GS B3NWG7/226-496      OS Drosophila erecta
#=GS B3NWG7/226-496      DE Uncharacterized protein, isoform J
#=GS B3NWG7/226-496      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; 
#=GS A0A0Q5TI69/226-491  AC A0A0Q5TI69
#=GS A0A0Q5TI69/226-491  OS Drosophila erecta
#=GS A0A0Q5TI69/226-491  DE Uncharacterized protein, isoform D
#=GS A0A0Q5TI69/226-491  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; 
#=GS A0A0R1EC52/226-491  AC A0A0R1EC52
#=GS A0A0R1EC52/226-491  OS Drosophila yakuba
#=GS A0A0R1EC52/226-491  DE Uncharacterized protein, isoform O
#=GS A0A0R1EC52/226-491  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GF SQ 11
Q24246/225-498              --------------------------------------------------------------------------------------TPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGL
Q7KWG3/20-332               -KKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQP----------------------------------------------
X2JCQ7/19-324               GKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGD--------DDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQP----------------------------------------------
Q8IRZ3/20-332               -KKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQP----------------------------------------------
F0JAG7/68-338               --------------------------------------------------------------------------------------TPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASR---
D6X3Z7/198-460              -----------------------------------------------------------------------------------------EQEQAKQEVKEVRELSEEEKQMIILSEDFQHFVDRAGRVMERVLCENVDYYTDY-SGGAGEEGLDEKSHQRISLNRYFFDERWSRNRCVTSMDWSPQFPELLLASYNNNEDSPNDPDGVVLIWNTKFKKATPEYIFHCQSAVLSAKFARFHPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSASAHTHPVYCLSVVGTQNAHNLISISTDGRLCSWSLDMLGQPQETLDLHRMQSKPVAVTCLDFPHSDVNNFVVGSEEGAAY-------
A0A0R1ECH4/70-333           -----------------------------------------------------------------------------------------EIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVY-------
B4PY10/226-496              --------------------------------------------------------------------------------------TPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASR---
B3NWG7/226-496              --------------------------------------------------------------------------------------TPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASR---
A0A0Q5TI69/226-491          ---------------------------------------------------------------------------------------PLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVY-------
A0A0R1EC52/226-491          ---------------------------------------------------------------------------------------PLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVASYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVY-------
#=GC scorecons              011111111111111111111111111111111111111110000000011111111111111111111111111111111111113559777777779997999997999999997997997999997997979999799996799779977998997979999798999998999899999977999977699799989998999997899999997999789999999797799897999999999999999999999999999999999799999999977999999997999979989999999997992222222212222222222222122222222222221220000000
#=GC scorecons_70           _________________________________________________________________________________________*******************************************************************************************************_*************************************************************************************************************************______________________________________________
#=GC scorecons_80           _________________________________________________________________________________________*_******_************************_********************_********_************_**************************_*****************************************_*******************************************************************************______________________________________________
#=GC scorecons_90           _________________________________________________________________________________________*________***_*****_********_**_**_*****_**_*_****_****__**__**__*****_*_****_******************__****___**_*************_********_***_********_*__****_*********************************_*********__********_****_************_**______________________________________________
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