# STOCKHOLM 1.0
#=GF ID 2.10.110.10/FF/000178
#=GF DE LIM domain family
#=GF AC 2.10.110.10/FF/000178
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 75.110
#=GS Q21192/42-98    AC Q21192
#=GS Q21192/42-98    OS Caenorhabditis elegans
#=GS Q21192/42-98    DE LIM domain family
#=GS Q21192/42-98    DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q21192/42-98    DR GO; GO:0003700; GO:0005634; GO:0007409; GO:0010628; GO:0010629; GO:0030421; GO:0045944; GO:0048666; GO:0060756; GO:0061038; GO:1904081; 
#=GS G4RV72/42-98    AC G4RV72
#=GS G4RV72/42-98    OS Caenorhabditis elegans
#=GS G4RV72/42-98    DE LIM domain family
#=GS G4RV72/42-98    DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS G4RV72/42-98    DR GO; GO:0005634; GO:0007409; GO:0009449; GO:0010468; GO:0010628; GO:0010629; GO:0030182; GO:0030421; GO:0060756; GO:0061038; 
#=GS T1EIU4/1-53     AC T1EIU4
#=GS T1EIU4/1-53     OS Helobdella robusta
#=GS T1EIU4/1-53     DE Uncharacterized protein
#=GS T1EIU4/1-53     DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS Q4H389/166-220  AC Q4H389
#=GS Q4H389/166-220  OS Ciona intestinalis
#=GS Q4H389/166-220  DE transcription factor protein
#=GS Q4H389/166-220  DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS H3FHA4/60-133   AC H3FHA4
#=GS H3FHA4/60-133   OS Pristionchus pacificus
#=GS H3FHA4/60-133   DE Uncharacterized protein
#=GS H3FHA4/60-133   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A8X5Q2/2-41     AC A8X5Q2
#=GS A8X5Q2/2-41     OS Caenorhabditis briggsae
#=GS A8X5Q2/2-41     DE Protein CBR-LIM-6
#=GS A8X5Q2/2-41     DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GF SQ 6
Q21192/42-98            ------------------CSGCGCLIKDRYIYRVMEDSYHESCLRCSCCQLSLSSFKKCFSRHGNIYCEHDHQML
G4RV72/42-98            ------------------CSGCGCLIKDRYIYRVMEDSYHESCLRCSCCQLSLSSFKKCFSRHGNIYCEHDHQML
T1EIU4/1-53             ------------------CKCCSKQIEDKFLLKINEDCYHETCMLCDVCGCSLN--GSCFIRDNQLLCKLDYE--
Q4H389/166-220          ------------------CQGCDYLIEDQYLLNIGGFSWHESCAKCVICRLKLQ--QSCFFSDGQLYCKKDYQQT
H3FHA4/60-133           PHSSSTSSSVSSSDSLFLCAGCGYSIQDRFVLKVNDDTFHESCLRCYACQLPLNASGTCFSKDGNIYCREDHAG-
A8X5Q2/2-41             -----------------------------------DESYHETCLRCYCCQLSLSSLKKCFSRHGNIYCEHDHQML
#=GC scorecons          000000000000000000523532253534333425455995955923956594214499455656695396521
#=GC scorecons_70       _______________________________________**_*__*__*___*_____**___*_***__**___
#=GC scorecons_80       _______________________________________**_*__*__*___*_____**_______*__*____
#=GC scorecons_90       _______________________________________**_*__*__*___*_____**_______*__*____
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