# STOCKHOLM 1.0
#=GF ID 2.10.110.10/FF/000136
#=GF DE LIM domain family
#=GF AC 2.10.110.10/FF/000136
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 95.009
#=GS G5EE86/167-244      AC G5EE86
#=GS G5EE86/167-244      OS Caenorhabditis elegans
#=GS G5EE86/167-244      DE LIM/homeobox protein ttx-3
#=GS G5EE86/167-244      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS G5EE86/167-244      DR GO; GO:0000977; GO:0005634; GO:0006355; GO:0007409; GO:0008306; GO:0008355; GO:0022401; GO:0030516; GO:0040024; GO:0040040; GO:0043052; GO:0045664; GO:0045893; GO:0061066; GO:1902667; GO:1904081; 
#=GS Q21192/99-164       AC Q21192
#=GS Q21192/99-164       OS Caenorhabditis elegans
#=GS Q21192/99-164       DE LIM domain family
#=GS Q21192/99-164       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q21192/99-164       DR GO; GO:0003700; GO:0005634; GO:0007409; GO:0010628; GO:0010629; GO:0030421; GO:0045944; GO:0048666; GO:0060756; GO:0061038; GO:1904081; 
#=GS G4RV72/99-164       AC G4RV72
#=GS G4RV72/99-164       OS Caenorhabditis elegans
#=GS G4RV72/99-164       DE LIM domain family
#=GS G4RV72/99-164       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS G4RV72/99-164       DR GO; GO:0005634; GO:0007409; GO:0009449; GO:0010468; GO:0010628; GO:0010629; GO:0030182; GO:0030421; GO:0060756; GO:0061038; 
#=GS T1EKE7/59-124       AC T1EKE7
#=GS T1EKE7/59-124       OS Helobdella robusta
#=GS T1EKE7/59-124       DE Uncharacterized protein
#=GS T1EKE7/59-124       DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS B3RNV9/67-136       AC B3RNV9
#=GS B3RNV9/67-136       OS Trichoplax adhaerens
#=GS B3RNV9/67-136       DE Uncharacterized protein
#=GS B3RNV9/67-136       DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; 
#=GS T1EFV1/64-142       AC T1EFV1
#=GS T1EFV1/64-142       OS Helobdella robusta
#=GS T1EFV1/64-142       DE Uncharacterized protein
#=GS T1EFV1/64-142       DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS A0A369S1H0/164-230  AC A0A369S1H0
#=GS A0A369S1H0/164-230  OS Trichoplax sp. H2
#=GS A0A369S1H0/164-230  DE LIM/homeobox protein Lhx3
#=GS A0A369S1H0/164-230  DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax sp. H2; 
#=GS H3EBE3/2-50         AC H3EBE3
#=GS H3EBE3/2-50         OS Pristionchus pacificus
#=GS H3EBE3/2-50         DE Uncharacterized protein
#=GS H3EBE3/2-50         DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A8WML0/139-214      AC A8WML0
#=GS A8WML0/139-214      OS Caenorhabditis briggsae
#=GS A8WML0/139-214      DE Protein CBR-TTX-3
#=GS A8WML0/139-214      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A261CID3/99-162   AC A0A261CID3
#=GS A0A261CID3/99-162   OS Caenorhabditis latens
#=GS A0A261CID3/99-162   DE Uncharacterized protein
#=GS A0A261CID3/99-162   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A0A2G5SJP7/108-171  AC A0A2G5SJP7
#=GS A0A2G5SJP7/108-171  OS Caenorhabditis nigoni
#=GS A0A2G5SJP7/108-171  DE Uncharacterized protein
#=GS A0A2G5SJP7/108-171  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A8X5Q2/42-105       AC A8X5Q2
#=GS A8X5Q2/42-105       OS Caenorhabditis briggsae
#=GS A8X5Q2/42-105       DE Protein CBR-LIM-6
#=GS A8X5Q2/42-105       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5SJI4/99-162   AC A0A2G5SJI4
#=GS A0A2G5SJI4/99-162   OS Caenorhabditis nigoni
#=GS A0A2G5SJI4/99-162   DE Uncharacterized protein
#=GS A0A2G5SJI4/99-162   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GF SQ 13
G5EE86/167-244              YQ-KCCRKCEIPLNREDMVMK-AK-EMIFHHACFVCFICGIKLNPGDYYTM-SPQGHLYCHAHYNAVRSTVLCEEAAVATVP-
Q21192/99-164               YG-KRCRRCMTLLLPTDIVHR-VH-FMYYHAQCFSCCSCQRPFNLGDEYHV--FDGEVFCRNDYQSICNFQ------------
G4RV72/99-164               YG-KRCRRCMTLLLPTDIVHR-VH-FMYYHAQCFSCCSCQRPFNLGDEYHV--FDGEVFCRNDYQSICNFQ------------
T1EKE7/59-124               FAPKTCSCCQSNISSDQLVMR-VR-DRIYHLHCFVCSVCSKQLTTGEPFGYNSDDNSLFCKLHYETYH---------------
B3RNV9/67-136               FG-RKCQGCNLGILPDEMVYR-LH-GSCYHINCLLCIVCSRQFKVGDKYYI-SDEGKPICKEDYDVAIMYFQLH---------
T1EFV1/64-142               FG-VRCRGCLDLIGPDDLVMRTAH-DVIFHVHCFLCCICGQLLHRGDHYTV--LDNNIYCQAHSDLILLQQQQQQQQQISNQY
A0A369S1H0/164-230          FG-RKCQGCNLGILPDEMVYR-LH-GSCYHINCLLCIVCSRQFKVGDKYYI-SDEGKPICKEDYDVAIMCS------------
H3EBE3/2-50                 L----------------VVRR-AHGGRVYHVDCFKCAACSKQLTTGQQFYIVPDDGNIVCMADYVQ-----------------
A8WML0/139-214              ---KCCRKCEQPLNREDMVMR-AK-EMIYHNSCFVCFLCTKKLNTGDFYTV-SPEGHLYCQAHYAV-PTQVLLEEPKSTTVSA
A0A261CID3/99-162           FG-KRCRRCMILLAPTDIVHR-VH-YMYYHAQCFSCCSCQGPFNLGDEYHV--FDGEVFCRNDYQAICN--------------
A0A2G5SJP7/108-171          FG-KRCRRCMTILSSTDIVHR-VH-YMYYHAQCFSCCSCQGPFNLGDEYHV--FDGEVFCRNDYQAMCD--------------
A8X5Q2/42-105               FG-KRCRRCMTVLSSTDIVHR-VH-YMYYHAQCFNCCSCQGPFNLGDEYHV--FDGEVFCRNDYQAMCD--------------
A0A2G5SJI4/99-162           FG-KRCRRCMTILSSTDIVHR-VH-YMYYHAQCFSCCSCQGPFNLGDEYHV--FDGEVFCRNDYQAMCD--------------
#=GC scorecons              54053743722252335594805603448934973934944465397374501367445944573322200000000000000
#=GC scorecons_70           _____*__*_________*_*__*____**__**_*__*___*__**_*_____**___*___*___________________
#=GC scorecons_80           __________________*_*_______**__**_*__*______*__*__________*___*___________________
#=GC scorecons_90           __________________*_*________*__*__*__*______*_____________*_______________________
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