# STOCKHOLM 1.0
#=GF ID 2.10.110.10/FF/000129
#=GF DE LIM domain-containing protein
#=GF AC 2.10.110.10/FF/000129
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 38.436
#=GS P50464/13-75      AC P50464
#=GS P50464/13-75      OS Caenorhabditis elegans
#=GS P50464/13-75      DE LIM domain-containing protein unc-97
#=GS P50464/13-75      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS P50464/13-75      DR GO; GO:0005515; GO:0005634; GO:0005654; GO:0005912; GO:0007005; GO:0007517; GO:0009925; GO:0017022; GO:0031430; GO:0040017; GO:0045216; GO:0046716; GO:0050954; GO:0055120; GO:0060298; 
#=GS A0A0R3PQP7/12-77  AC A0A0R3PQP7
#=GS A0A0R3PQP7/12-77  OS Angiostrongylus costaricensis
#=GS A0A0R3PQP7/12-77  DE LIM domain-containing protein
#=GS A0A0R3PQP7/12-77  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Metastrongyloidea; Angiostrongylidae; Angiostrongylus; Angiostrongylus costaricensis; 
#=GS A0A016VL17/9-74   AC A0A016VL17
#=GS A0A016VL17/9-74   OS Ancylostoma ceylanicum
#=GS A0A016VL17/9-74   DE LIM domain-containing protein
#=GS A0A016VL17/9-74   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; 
#=GS H3FQH2/17-81      AC H3FQH2
#=GS H3FQH2/17-81      OS Pristionchus pacificus
#=GS H3FQH2/17-81      DE LIM domain-containing protein
#=GS H3FQH2/17-81      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0A2A2L3N1/18-82  AC A0A2A2L3N1
#=GS A0A2A2L3N1/18-82  OS Diploscapter pachys
#=GS A0A2A2L3N1/18-82  DE LIM domain-containing protein
#=GS A0A2A2L3N1/18-82  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Diploscapter; Diploscapter pachys; 
#=GS A0A261CPE8/18-80  AC A0A261CPE8
#=GS A0A261CPE8/18-80  OS Caenorhabditis latens
#=GS A0A261CPE8/18-80  DE Uncharacterized protein
#=GS A0A261CPE8/18-80  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS G0M6H1/13-75      AC G0M6H1
#=GS G0M6H1/13-75      OS Caenorhabditis brenneri
#=GS G0M6H1/13-75      DE LIM domain-containing protein
#=GS G0M6H1/13-75      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A2H2I522/17-79  AC A0A2H2I522
#=GS A0A2H2I522/17-79  OS Caenorhabditis japonica
#=GS A0A2H2I522/17-79  DE LIM domain-containing protein
#=GS A0A2H2I522/17-79  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS A0A1I7TJS2/13-75  AC A0A1I7TJS2
#=GS A0A1I7TJS2/13-75  OS Caenorhabditis tropicalis
#=GS A0A1I7TJS2/13-75  DE LIM domain-containing protein
#=GS A0A1I7TJS2/13-75  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS E3LDX8/18-80      AC E3LDX8
#=GS E3LDX8/18-80      OS Caenorhabditis remanei
#=GS E3LDX8/18-80      DE LIM domain-containing protein
#=GS E3LDX8/18-80      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A8XKH8/18-80      AC A8XKH8
#=GS A8XKH8/18-80      OS Caenorhabditis briggsae
#=GS A8XKH8/18-80      DE LIM domain-containing protein
#=GS A8XKH8/18-80      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5STI6/18-80  AC A0A2G5STI6
#=GS A0A2G5STI6/18-80  OS Caenorhabditis nigoni
#=GS A0A2G5STI6/18-80  DE LIM domain-containing protein
#=GS A0A2G5STI6/18-80  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A2A6CFX4/16-80  AC A0A2A6CFX4
#=GS A0A2A6CFX4/16-80  OS Pristionchus pacificus
#=GS A0A2A6CFX4/16-80  DE LIM domain-containing protein
#=GS A0A2A6CFX4/16-80  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0A016VNF5/14-79  AC A0A016VNF5
#=GS A0A016VNF5/14-79  OS Ancylostoma ceylanicum
#=GS A0A016VNF5/14-79  DE LIM domain-containing protein
#=GS A0A016VNF5/14-79  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; 
#=GS A0A2G5STH1/13-75  AC A0A2G5STH1
#=GS A0A2G5STH1/13-75  OS Caenorhabditis nigoni
#=GS A0A2G5STH1/13-75  DE LIM domain-containing protein
#=GS A0A2G5STH1/13-75  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GF SQ 15
P50464/13-75              -AHGFENMVCVRCNDGFSMQDQMVNSSGQVWHSECFVCAQCFEPFPDGIYFEYEGRKYCEHDFH---
A0A0R3PQP7/12-77          -AHGFENLVCVRCNDGFSLQDQIVNSSGQVWHSECFVCAQCFEPFPDGIYFEFEGRKYCEHDFHVLY
A0A016VL17/9-74           -AHGFENLVCVRCNDGFSLQDQIVNSSGQVWHSECFVCAQCFEPFPDGIYFEFEGRKYCEHDFHVLY
H3FQH2/17-81              -AQGFDGLACYRCNDGFNIDDELVNSNGQVFHSGCFVCAQCFEPFPDGIYFEFEDRKYCEHDFHVL-
A0A2A2L3N1/18-82          -AHGFENLVCVRCNDGFSLQDQMVNSSGQVWHTECFVCAQCFEPFPDGIYFEFEGRKYCEHDFHVL-
A0A261CPE8/18-80          -AHGFENMVCVRCRDGFSMQDQMVNSSGEVWHSECFVCAQCFEPFPDGIYFEYEGRKYCEHDFH---
G0M6H1/13-75              -AHGFENMVCVRCRDGFSMQDQMVNSSGEVWHSECFVCAQCFEPFPDGIYFEYEGRKYCEHDFH---
A0A2H2I522/17-79          -ARGFENMVCVRCNDGFSMQDQMVNSSGQVWHSECFVCAQCFEPFPDGIYFEFEGRKYCEHDFH---
A0A1I7TJS2/13-75          -AHGFENMVCVRCRDGFSMQDQMVNSSGEVWHSECFVCAQCFEPFPDGIYFEYEGRKYCEHDFH---
E3LDX8/18-80              -AHGFENMVCVRCRDGFSMQDQMVNSSGEVWHSECFVCAQCFEPFPDGIYFEYEGRKYCEHDFH---
A8XKH8/18-80              -AHGFENMVCVRCRDGFSMQDQMVNSSGEVWHSDCFVCAQCFEPFPDGIYFEYEGRKYCEHDFH---
A0A2G5STI6/18-80          -AHGFENMVCVRCRDGFSMQDQMVNSSGEVWHSDCFVCAQCFEPFPDGIYFEYEGRKYCEHDFH---
A0A2A6CFX4/16-80          FAQGFDGLACYRCNDGFNIDDELVNSNGQVFHSGCFVCAQCFEPFPDGIYFEFEDRKYCEHDFHV--
A0A016VNF5/14-79          -AHGFENLVCVRCNDGFSLQDQIVNSSGQVWHSECFVCAQCFEPFPDGIYFEFEGRKYCEHDFHVLY
A0A2G5STH1/13-75          -AHGFENMVCVRCRDGFSMQDQMVNSSGEVWHSDCFVCAQCFEPFPDGIYFEYEGRKYCEHDFH---
#=GC scorecons            0969976669599699965696699969696985999999999999999999796999999999210
#=GC scorecons_70         _*********_**_****_***_*******_**_******************************___
#=GC scorecons_80         _*_***___*_**_***___*__***_*_*_**_********************_*********___
#=GC scorecons_90         _*_**____*_**_***___*__***_*_*_**_******************_*_*********___
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