# STOCKHOLM 1.0
#=GF ID 2.10.109.10/FF/000016
#=GF DE HTH-type transcriptional regulator prtR
#=GF AC 2.10.109.10/FF/000016
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 43.745
#=GS Q9I551/109-235      AC Q9I551
#=GS Q9I551/109-235      OS Pseudomonas aeruginosa PAO1
#=GS Q9I551/109-235      DE Probable transcriptional regulator
#=GS Q9I551/109-235      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS Q9I551/109-235      DR GO; GO:0001896; GO:0006974; GO:0045892; 
#=GS Q06553/111-246      AC Q06553
#=GS Q06553/111-246      OS Pseudomonas aeruginosa PAO1
#=GS Q06553/111-246      DE HTH-type transcriptional regulator PrtR
#=GS Q06553/111-246      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS Q06553/111-246      DR GO; GO:1900377; 
#=GS A0A157WXL2/109-235  AC A0A157WXL2
#=GS A0A157WXL2/109-235  OS Enterobacter cloacae
#=GS A0A157WXL2/109-235  DE Putative phage represso
#=GS A0A157WXL2/109-235  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter cloacae; 
#=GS A0A335NL50/111-246  AC A0A335NL50
#=GS A0A335NL50/111-246  OS Acinetobacter baumannii
#=GS A0A335NL50/111-246  DE Transciptional regulator
#=GS A0A335NL50/111-246  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter baumannii; 
#=GS A0A1S1C6S8/111-246  AC A0A1S1C6S8
#=GS A0A1S1C6S8/111-246  OS Pseudomonas sp. HMSC059F05
#=GS A0A1S1C6S8/111-246  DE Transcriptional regulator
#=GS A0A1S1C6S8/111-246  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC059F05; 
#=GS A0A3S4Q2N1/111-246  AC A0A3S4Q2N1
#=GS A0A3S4Q2N1/111-246  OS Pseudomonas fluorescens
#=GS A0A3S4Q2N1/111-246  DE Transcriptional regulator
#=GS A0A3S4Q2N1/111-246  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group; Pseudomonas fluorescens; 
#=GS A0A1F0IWN1/111-246  AC A0A1F0IWN1
#=GS A0A1F0IWN1/111-246  OS Pseudomonas sp. HMSC065H01
#=GS A0A1F0IWN1/111-246  DE Transcriptional regulator
#=GS A0A1F0IWN1/111-246  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC065H01; 
#=GS A0A2V2U0A4/111-246  AC A0A2V2U0A4
#=GS A0A2V2U0A4/111-246  OS Pseudomonas sp. RW410
#=GS A0A2V2U0A4/111-246  DE Transcriptional regulator
#=GS A0A2V2U0A4/111-246  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. RW410; 
#=GS A0A0D6S713/102-233  AC A0A0D6S713
#=GS A0A0D6S713/102-233  OS Pseudomonas sp. FeS53a
#=GS A0A0D6S713/102-233  DE Transcriptional regulator, MerR family
#=GS A0A0D6S713/102-233  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. FeS53a; 
#=GS A0A1I0UK86/102-233  AC A0A1I0UK86
#=GS A0A1I0UK86/102-233  OS Pseudomonas otitidis
#=GS A0A1I0UK86/102-233  DE Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains
#=GS A0A1I0UK86/102-233  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas otitidis; 
#=GS U3HHC4/102-233      AC U3HHC4
#=GS U3HHC4/102-233      OS Pseudomonas alcaligenes OT 69
#=GS U3HHC4/102-233      DE Repressor
#=GS U3HHC4/102-233      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas alcaligenes; 
#=GS A0A069QIQ9/111-246  AC A0A069QIQ9
#=GS A0A069QIQ9/111-246  OS Pseudomonas aeruginosa
#=GS A0A069QIQ9/111-246  DE HTH-type transcriptional regulator PrtR
#=GS A0A069QIQ9/111-246  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A1C7B9N5/111-246  AC A0A1C7B9N5
#=GS A0A1C7B9N5/111-246  OS Pseudomonas aeruginosa BL04
#=GS A0A1C7B9N5/111-246  DE HTH-type transcriptional regulator prtR
#=GS A0A1C7B9N5/111-246  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS W1MMR7/109-235      AC W1MMR7
#=GS W1MMR7/109-235      OS Pseudomonas aeruginosa VRFPA03
#=GS W1MMR7/109-235      DE XRE family transcriptional regulator
#=GS W1MMR7/109-235      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A2V2TMG9/109-235  AC A0A2V2TMG9
#=GS A0A2V2TMG9/109-235  OS Pseudomonas sp. RW410
#=GS A0A2V2TMG9/109-235  DE Helix-turn-helix transcriptional regulator
#=GS A0A2V2TMG9/109-235  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. RW410; 
#=GS A0A071L4T2/109-235  AC A0A071L4T2
#=GS A0A071L4T2/109-235  OS Pseudomonas aeruginosa
#=GS A0A071L4T2/109-235  DE HTH-type transcriptional regulator PrtR
#=GS A0A071L4T2/109-235  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A0H2Z7C0/109-235  AC A0A0H2Z7C0
#=GS A0A0H2Z7C0/109-235  OS Pseudomonas aeruginosa UCBPP-PA14
#=GS A0A0H2Z7C0/109-235  DE Probable transcriptional regulator
#=GS A0A0H2Z7C0/109-235  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A1G5E177/109-235  AC A0A1G5E177
#=GS A0A1G5E177/109-235  OS Acinetobacter baumannii
#=GS A0A1G5E177/109-235  DE Prophage LambdaSo, transcriptional regulator, Cro/CI family
#=GS A0A1G5E177/109-235  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter baumannii; 
#=GS A0A3S5E510/109-235  AC A0A3S5E510
#=GS A0A3S5E510/109-235  OS Pseudomonas fluorescens
#=GS A0A3S5E510/109-235  DE Transcriptional regulator
#=GS A0A3S5E510/109-235  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group; Pseudomonas fluorescens; 
#=GS A0A1F0IMF2/109-235  AC A0A1F0IMF2
#=GS A0A1F0IMF2/109-235  OS Pseudomonas sp. HMSC065H01
#=GS A0A1F0IMF2/109-235  DE XRE family transcriptional regulator
#=GS A0A1F0IMF2/109-235  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC065H01; 
#=GS A0A1S1C379/109-235  AC A0A1S1C379
#=GS A0A1S1C379/109-235  OS Pseudomonas sp. HMSC059F05
#=GS A0A1S1C379/109-235  DE XRE family transcriptional regulator
#=GS A0A1S1C379/109-235  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC059F05; 
#=GS V6AJV5/109-235      AC V6AJV5
#=GS V6AJV5/109-235      OS Pseudomonas aeruginosa MH27
#=GS V6AJV5/109-235      DE HTH-type transcriptional regulator PrtR
#=GS V6AJV5/109-235      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A1C7C2Z6/109-235  AC A0A1C7C2Z6
#=GS A0A1C7C2Z6/109-235  OS Pseudomonas aeruginosa BL04
#=GS A0A1C7C2Z6/109-235  DE Transcriptional regulator
#=GS A0A1C7C2Z6/109-235  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A0A8RMV2/109-234  AC A0A0A8RMV2
#=GS A0A0A8RMV2/109-234  OS Pseudomonas aeruginosa
#=GS A0A0A8RMV2/109-234  DE HTH-type transcriptional regulator PrtR
#=GS A0A0A8RMV2/109-234  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GF SQ 24
Q9I551/109-235              -------ELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEA-AEHINVIGRVFWYSV-
Q06553/111-246              LPLYKEVEMSAGAGRTAVREIEGRKLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGEIYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWSTV
A0A157WXL2/109-235          -------ELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEA-AEHINVIGRVFWYSV-
A0A335NL50/111-246          LPLYKEVEMSAGAGRTAVREIEGRKLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGEIYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWSTV
A0A1S1C6S8/111-246          LPLYKEVEMSAGAGRTAVREIEGRKLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGEIYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWSTV
A0A3S4Q2N1/111-246          LPLYKEVEMSAGAGRTAVREIEGRKLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGEIYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWSTV
A0A1F0IWN1/111-246          LPLYKEVEMSAGAGRTAVREIEGRKLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGEIYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWSTV
A0A2V2U0A4/111-246          LPLYKEVEMSAGAGRTAVREIEGRKLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGEIYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWSTV
A0A0D6S713/102-233          -PFYKEVELSGGKGSTVVLQTTGRKLRFGKYSLRKKNIDAASAACVTVNGNSMEPVLPDGSTVGVDTSSRTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEATEV-AEHINVIGRVFWYS--
A0A1I0UK86/102-233          -PFYKEVELSGGKGSTVVLQTTGRKLRFGKYSLRKKNIDAASAACVTVNGNSMEPVLPDGSTVGVDTSSRTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEATEV-AEHINVIGRVFWYS--
U3HHC4/102-233              -PFYKEVELSGGKGSTVVLQTTGRKLRFGKYSLRKKNIDAASAACVTVNGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRVRSFNSDEHPDERYEPGEA-AEHIQIIGRVFWYS--
A0A069QIQ9/111-246          LPLYKEVEMSAGAGRTAVREIEGRKLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGEIYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWSTV
A0A1C7B9N5/111-246          LPLYKEVEMSAGAGRTAVREIEGRKLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGEIYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWSTV
W1MMR7/109-235              -------ELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEA-AEHINVIGRVFWYSV-
A0A2V2TMG9/109-235          -------ELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEA-AEHINVIGRVFWYSV-
A0A071L4T2/109-235          -------ELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEA-AEHINVIGRVFWYSV-
A0A0H2Z7C0/109-235          -------ELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEA-AEHINVIGRVFWYSV-
A0A1G5E177/109-235          -------ELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEA-AEHINVIGRVFWYSV-
A0A3S5E510/109-235          -------ELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEA-AEHINVIGRVFWYSV-
A0A1F0IMF2/109-235          -------ELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEA-AEHINVIGRVFWYSV-
A0A1S1C379/109-235          -------ELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEA-AEHINVIGRVFWYSV-
V6AJV5/109-235              -------ELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEA-AEHINVIGRVFWYSV-
A0A1C7C2Z6/109-235          -------ELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEA-AEHINVIGRVFWYSV-
A0A0A8RMV2/109-234          -------ELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASAACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYEPQEA-AEHINVIGRLFWYS--
#=GC scorecons              1222222969695959674665999999644799555797669596565999999665999979999665595997699679995999966999999969699995797999595857516569569958995941
#=GC scorecons_70           _______***_*_*_*_*_*__******___***___***__*_*__*_********_*********____*_***********_********************_******_*_*_*____**_***_***_*__
#=GC scorecons_80           _______*_*_*_*_*______******___***____**__*_*____******___****_****____*_**__**__***_****__*******_*_****__*_***_*_*_______*__**_***_*__
#=GC scorecons_90           _______*_*_*_*_*______******____**____*___*_*____******___****_****____*_**__**__***_****__*******_*_****__*_***_*_*_______*__**_***_*__
//