# STOCKHOLM 1.0
#=GF ID 1.25.40.90/FF/000043
#=GF DE Protein NRD1
#=GF AC 1.25.40.90/FF/000043
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 46.879
#=GS 3cljA00/1-157     AC P53617
#=GS 3cljA00/1-157     OS Saccharomyces cerevisiae S288C
#=GS 3cljA00/1-157     DE Protein NRD1
#=GS 3cljA00/1-157     DR CATH; 3clj; A:5-154; 
#=GS 3cljA00/1-157     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 3cljA00/1-157     DR GO; GO:0001068; GO:0003723; GO:0003729; GO:0005515; GO:0005634; GO:0019904; GO:0030847; GO:0031124; GO:0031126; GO:0034472; GO:0035649; GO:0042780; GO:0071028; GO:0071034; GO:0071041; 
#=GS 2mowA00/1-161     AC P53617
#=GS 2mowA00/1-161     OS Saccharomyces cerevisiae S288C
#=GS 2mowA00/1-161     DE Protein NRD1
#=GS 2mowA00/1-161     DR CATH; 2mow; A:1-161; 
#=GS 2mowA00/1-161     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2mowA00/1-161     DR GO; GO:0001068; GO:0003723; GO:0003729; GO:0005515; GO:0005634; GO:0019904; GO:0030847; GO:0031124; GO:0031126; GO:0034472; GO:0035649; GO:0042780; GO:0071028; GO:0071034; GO:0071041; 
#=GS 2lo6A00/1-161     AC P53617
#=GS 2lo6A00/1-161     OS Saccharomyces cerevisiae S288C
#=GS 2lo6A00/1-161     DE Protein NRD1
#=GS 2lo6A00/1-161     DR CATH; 2lo6; A:1-154; 
#=GS 2lo6A00/1-161     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2lo6A00/1-161     DR GO; GO:0001068; GO:0003723; GO:0003729; GO:0005515; GO:0005634; GO:0019904; GO:0030847; GO:0031124; GO:0031126; GO:0034472; GO:0035649; GO:0042780; GO:0071028; GO:0071034; GO:0071041; 
#=GS P53617/5-160      AC P53617
#=GS P53617/5-160      OS Saccharomyces cerevisiae S288C
#=GS P53617/5-160      DE Protein NRD1
#=GS P53617/5-160      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS P53617/5-160      DR GO; GO:0001068; GO:0003723; GO:0003729; GO:0005515; GO:0005634; GO:0019904; GO:0030847; GO:0031124; GO:0031126; GO:0034472; GO:0035649; GO:0042780; GO:0071028; GO:0071034; GO:0071041; 
#=GS G8JMK7/1-160      AC G8JMK7
#=GS G8JMK7/1-160      OS Eremothecium cymbalariae DBVPG#7215
#=GS G8JMK7/1-160      DE Uncharacterized protein
#=GS G8JMK7/1-160      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium cymbalariae; 
#=GS R9XEH6/3-155      AC R9XEH6
#=GS R9XEH6/3-155      OS Saccharomycetaceae sp. 'Ashbya aceri'
#=GS R9XEH6/3-155      DE AaceriAFR636Cp
#=GS R9XEH6/3-155      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomycetaceae sp. 'Ashbya aceri'; 
#=GS A0A120K1P0/3-155  AC A0A120K1P0
#=GS A0A120K1P0/3-155  OS Eremothecium sinecaudum
#=GS A0A120K1P0/3-155  DE HCL574Wp
#=GS A0A120K1P0/3-155  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium sinecaudum; 
#=GS Q752E0/3-155      AC Q752E0
#=GS Q752E0/3-155      OS Eremothecium gossypii ATCC 10895
#=GS Q752E0/3-155      DE AFR636Cp
#=GS Q752E0/3-155      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; 
#=GS H0H043/5-160      AC H0H043
#=GS H0H043/5-160      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0H043/5-160      DE Nrd1p
#=GS H0H043/5-160      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS A0A0L8VJ64/5-160  AC A0A0L8VJ64
#=GS A0A0L8VJ64/5-160  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VJ64/5-160  DE NRD1p RNA-binding subunit of Nrd1 complex
#=GS A0A0L8VJ64/5-160  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS A0A0L8RBU9/5-160  AC A0A0L8RBU9
#=GS A0A0L8RBU9/5-160  OS Saccharomyces eubayanus
#=GS A0A0L8RBU9/5-160  DE NRD1-like protein
#=GS A0A0L8RBU9/5-160  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces eubayanus; 
#=GS G2WLL5/5-160      AC G2WLL5
#=GS G2WLL5/5-160      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WLL5/5-160      DE K7_Nrd1p
#=GS G2WLL5/5-160      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LP95/5-160      AC B3LP95
#=GS B3LP95/5-160      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LP95/5-160      DE Protein NRD1
#=GS B3LP95/5-160      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS N1NZY7/5-160      AC N1NZY7
#=GS N1NZY7/5-160      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1NZY7/5-160      DE Nrd1p
#=GS N1NZY7/5-160      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C8ZFY6/5-160      AC C8ZFY6
#=GS C8ZFY6/5-160      OS Saccharomyces cerevisiae EC1118
#=GS C8ZFY6/5-160      DE Nrd1p
#=GS C8ZFY6/5-160      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZRJ2/5-160      AC A6ZRJ2
#=GS A6ZRJ2/5-160      OS Saccharomyces cerevisiae YJM789
#=GS A6ZRJ2/5-160      DE Nuclear pre-mRNA down-regulation
#=GS A6ZRJ2/5-160      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS H0GM89/5-160      AC H0GM89
#=GS H0GM89/5-160      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GM89/5-160      DE Nrd1p
#=GS H0GM89/5-160      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS C7GPB0/5-160      AC C7GPB0
#=GS C7GPB0/5-160      OS Saccharomyces cerevisiae JAY291
#=GS C7GPB0/5-160      DE Nrd1p
#=GS C7GPB0/5-160      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 18
3cljA00/1-157             ----MDFQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRS--NSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAAALEHHHHHH
2mowA00/1-161             MQQDDDFQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRS--NSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAMDLEHHHHHH
2lo6A00/1-161             MQQDDDFQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRS--NSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAMDLEHHHHHH
P53617/5-160              ----DDFQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRS--NSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAMDISNNTAN-
G8JMK7/1-160              M---SNHEDFVATLESLKELKSGISGSRIKKLTTYALENVNAEEYLIEKIMKYSRTCPATHKLGSLYVIDSIGRAFLNKCKDLNQSMKSNAQPGSYGHALFTLGENVQTLLSDGVEKSSAENRDKIKDLVDIWDKADLFQKGVLNAVRGVWFALKDTGKSSSS
R9XEH6/3-155              -----GHEDFVATLESLKELKSGISGSRIKKLTTYALENVNAEEYLIDKIINYSRTCPATHKLGSLYVIDSIGRAFLNKCKDLNQSMKSSAQAGTYGHALFTLGENIQTLLSDGVEKSSAENRDKIKDLVDIWDKADLFQKGVLNAVRGVWFALKDTG-----
A0A120K1P0/3-155          -----NHEDFVATLESLKELKSGISGSRIKKLTNYALENVNAEEYLIEKIIYYSRTCAATHKLGSLYVIDSIGRAFLNKCKDTNQAIKSNAQPGTYGHALFTLGENIQTLLSDGVEKSSAENRDKIKDLIDIWDKADLFQKGVLNAVRGVWFALKDTG-----
Q752E0/3-155              -----GHEDFVATLESLKELKSGISGSRIKKLTTYALENVNAEEYLIDKIINYSRTCPATHKLGSLYVIDSIGRAFLNKCKDLNQSMKSSAQAGTYGHALFTLGENIQTLLSDGVEKSSAENRDKIKDLVDIWDKADLFQKGVLNAVRGVWFALKDTG-----
H0H043/5-160              ----DDFQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRS--NANNSSNKPGTCIHAINTLGEVIQELLSDAIAKSSQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAMDITNNTAT-
A0A0L8VJ64/5-160          ----DDFQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRS--NSNSNSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAMDISNNTAN-
A0A0L8RBU9/5-160          ----DDFQTFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRST-NTTSANNKSGTCTHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAMDITNNTT--
G2WLL5/5-160              ----DDFQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRS--NSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAMDISNNTAN-
B3LP95/5-160              ----DDFQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRS--NSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAMDISNNTAN-
N1NZY7/5-160              ----DDFQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRS--NSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAMDISNNTAN-
C8ZFY6/5-160              ----DDFQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRS--NSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAMDISNNTAN-
A6ZRJ2/5-160              ----DDFQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSKLCPDSHKLGSLYIIDSIGRAYLDETRS--NSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAMDISNNTAN-
H0GM89/5-160              ----DDFQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRS--NSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAMDISNNTAN-
C7GPB0/5-160              ----DDFQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRS--NSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFAMDISNNTAN-
#=GC scorecons            0000255669999999697999999999999997999767659546954985998597569999999799999997966575115745865669765996499995895999967599657677997496999976699996499979646996545422210
#=GC scorecons_70         _______*_*****************************_**_*__**__**_***_**__******************__*____*__**_*****_***_****_**_****_*_**__*_*****_*_*****__****__*****___***_________
#=GC scorecons_80         _________*******_*_******************_____*___*__**_***_**__*******_*********___________*____**__**__****_**_****___**______**__*_****___****__***_*___**__________
#=GC scorecons_90         _________*******_*_**************_***_____*___*__**_***_*___*******_*******_*________________*___**__****_**_****___**______**__*_****___****__***_*___**__________
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