# STOCKHOLM 1.0
#=GF ID 1.25.40.20/FF/000385
#=GF DE Probable 26S proteasome regulatory subunit p28
#=GF AC 1.25.40.20/FF/000385
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 14.182
#=GS 2dzoC00/1-228     AC P50086
#=GS 2dzoC00/1-228     OS Saccharomyces cerevisiae S288C
#=GS 2dzoC00/1-228     DE Probable 26S proteasome regulatory subunit p28
#=GS 2dzoC00/1-228     DR CATH; 2dzo; C:2-228; 
#=GS 2dzoC00/1-228     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2dzoC00/1-228     DR GO; GO:0005515; GO:0005634; GO:0005829; GO:0070682; GO:1904855; 
#=GS 2dzoA00/1-228     AC P50086
#=GS 2dzoA00/1-228     OS Saccharomyces cerevisiae S288C
#=GS 2dzoA00/1-228     DE Probable 26S proteasome regulatory subunit p28
#=GS 2dzoA00/1-228     DR CATH; 2dzo; A:1-228; 
#=GS 2dzoA00/1-228     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2dzoA00/1-228     DR GO; GO:0005515; GO:0005634; GO:0005829; GO:0070682; GO:1904855; 
#=GS 2dznE00/1-228     AC P50086
#=GS 2dznE00/1-228     OS Saccharomyces cerevisiae S288C
#=GS 2dznE00/1-228     DE Probable 26S proteasome regulatory subunit p28
#=GS 2dznE00/1-228     DR CATH; 2dzn; E:2-228; 
#=GS 2dznE00/1-228     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2dznE00/1-228     DR GO; GO:0005515; GO:0005634; GO:0005829; GO:0070682; GO:1904855; 
#=GS 2dznC00/1-228     AC P50086
#=GS 2dznC00/1-228     OS Saccharomyces cerevisiae S288C
#=GS 2dznC00/1-228     DE Probable 26S proteasome regulatory subunit p28
#=GS 2dznC00/1-228     DR CATH; 2dzn; C:2-228; 
#=GS 2dznC00/1-228     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2dznC00/1-228     DR GO; GO:0005515; GO:0005634; GO:0005829; GO:0070682; GO:1904855; 
#=GS 2dznA00/1-228     AC P50086
#=GS 2dznA00/1-228     OS Saccharomyces cerevisiae S288C
#=GS 2dznA00/1-228     DE Probable 26S proteasome regulatory subunit p28
#=GS 2dznA00/1-228     DR CATH; 2dzn; A:3-228; 
#=GS 2dznA00/1-228     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 2dznA00/1-228     DR GO; GO:0005515; GO:0005634; GO:0005829; GO:0070682; GO:1904855; 
#=GS 1wg0A01/1-228     AC P50086
#=GS 1wg0A01/1-228     OS Saccharomyces cerevisiae S288C
#=GS 1wg0A01/1-228     DE Probable 26S proteasome regulatory subunit p28
#=GS 1wg0A01/1-228     DR CATH; 1wg0; A:1-228; 
#=GS 1wg0A01/1-228     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 1wg0A01/1-228     DR GO; GO:0005515; GO:0005634; GO:0005829; GO:0070682; GO:1904855; 
#=GS 1ixvA00/1-231     AC P50086
#=GS 1ixvA00/1-231     OS Saccharomyces cerevisiae S288C
#=GS 1ixvA00/1-231     DE Probable 26S proteasome regulatory subunit p28
#=GS 1ixvA00/1-231     DR CATH; 1ixv; A:3-231; 
#=GS 1ixvA00/1-231     DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 1ixvA00/1-231     DR GO; GO:0005515; GO:0005634; GO:0005829; GO:0070682; GO:1904855; 
#=GS P50086/1-228      AC P50086
#=GS P50086/1-228      OS Saccharomyces cerevisiae S288C
#=GS P50086/1-228      DE Probable 26S proteasome regulatory subunit p28
#=GS P50086/1-228      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS P50086/1-228      DR GO; GO:0005515; GO:0005634; GO:0005829; GO:0070682; GO:1904855; 
#=GS J5P6B6/1-228      AC J5P6B6
#=GS J5P6B6/1-228      OS Saccharomyces kudriavzevii IFO 1802
#=GS J5P6B6/1-228      DE NAS6-like protein
#=GS J5P6B6/1-228      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces kudriavzevii; 
#=GS H0GGW9/1-218      AC H0GGW9
#=GS H0GGW9/1-218      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GGW9/1-218      DE Nas6p
#=GS H0GGW9/1-218      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS A0A0L8VPU5/3-229  AC A0A0L8VPU5
#=GS A0A0L8VPU5/3-229  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VPU5/3-229  DE NAS6p Assembly chaperone for the 19S proteasome regulatory particle base
#=GS A0A0L8VPU5/3-229  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS H0GVD4/1-218      AC H0GVD4
#=GS H0GVD4/1-218      OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GVD4/1-218      DE Nas6p
#=GS H0GVD4/1-218      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS N1P2L0/1-228      AC N1P2L0
#=GS N1P2L0/1-228      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1P2L0/1-228      DE Nas6p
#=GS N1P2L0/1-228      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LI08/3-229      AC B3LI08
#=GS B3LI08/3-229      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LI08/3-229      DE 26S proteasome interacting protein
#=GS B3LI08/3-229      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WEV8/1-228      AC G2WEV8
#=GS G2WEV8/1-228      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WEV8/1-228      DE K7_Nas6p
#=GS G2WEV8/1-228      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C7GNJ7/1-228      AC C7GNJ7
#=GS C7GNJ7/1-228      OS Saccharomyces cerevisiae JAY291
#=GS C7GNJ7/1-228      DE Nas6p
#=GS C7GNJ7/1-228      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZUP0/3-229      AC A6ZUP0
#=GS A6ZUP0/3-229      OS Saccharomyces cerevisiae YJM789
#=GS A6ZUP0/3-229      DE Non-ATPase subunit 6
#=GS A6ZUP0/3-229      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B5VJH0/3-229      AC B5VJH0
#=GS B5VJH0/3-229      OS Saccharomyces cerevisiae AWRI1631
#=GS B5VJH0/3-229      DE YGR232Wp-like protein
#=GS B5VJH0/3-229      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C8Z9C4/3-229      AC C8Z9C4
#=GS C8Z9C4/3-229      OS Saccharomyces cerevisiae EC1118
#=GS C8Z9C4/3-229      DE Nas6p
#=GS C8Z9C4/3-229      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 19
2dzoC00/1-228             MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
2dzoA00/1-228             MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
2dznE00/1-228             MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
2dznC00/1-228             MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
2dznA00/1-228             MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
1wg0A01/1-228             MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
1ixvA00/1-231             MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNVVDA
P50086/1-228              MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
J5P6B6/1-228              MSDYPLHQACMENEFSKVQELLHSKPSLLLQMDQDGRIPLHWSVSFQAHEITSFLLSKMEHVNLDDYPDHSGWTPFHIACSVGDLGVVKSLYDRPVKPDLNKVTNQGITCLHLTVGKKWFEVSQFLINNGASVRIKDKFNQIPLHRAASVGSLKLIALLCGAGKSPVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYHAEYDLVDSKGAKAEDVALNEQVKNFFLNNV---
H0GGW9/1-218              ----------MENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVGIKDKFNQIPLHRAASVGSLKLIELLCGLGKSPVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
A0A0L8VPU5/3-229          -NNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVGIKDKFNQIPLHRAASVGSLKLIELLCGLGKSPVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
H0GVD4/1-218              ----------MENEFSKVQELLHSKPSLLLQMDQDDRIPLHWSVSFQAHEITSFLLSKMEHVNLDDYPDHSGWTPFHIACSVGDLGVVKSLYDRPVKPDLNKVTNQGITCLHLTVGKKWFEVSQFLINNGASVRIKDKFNQIPLHRAASVGSLKLIALLCGAGKSPVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYHAEYDLVDSKGAKAEDVALNEQVKKFFLNNV---
N1P2L0/1-228              MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
B3LI08/3-229              -NNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVGIKDKFNQIPLHRAASVGSLKLIELLCGLGKSPVNWQDKQGWTPLFHALAEGPGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
G2WEV8/1-228              MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSPVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
C7GNJ7/1-228              MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSPVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
A6ZUP0/3-229              -NNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVGIKDKFNQIPLHRAASVGSLKLIELLCGLGKSPVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
B5VJH0/3-229              -NNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVGIKDKFNQIPLHRAASVGSLKLIELLCGLGKSPVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
C8Z9C4/3-229              -NNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVGIKDKFNQIPLHRAASVGSLKLIELLCGLGKSPVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNV---
#=GC scorecons            233444444499999599999999999999959997999999999999999999999999699999999699999999999996969999999996999999799997999996999999999999969999969999999999999999999999599995999699999999999999999998999999999995999999969999999999999997999999000
#=GC scorecons_70         __________*****_***************_*************************************_***************************************************************_**********************_****_***********************************_******************************___
#=GC scorecons_80         __________*****_***************_****************************_********_*************_*_*********_*****************_*************_*****_**********************_****_***_*******************************_*******_**********************___
#=GC scorecons_90         __________*****_***************_***_************************_********_*************_*_*********_******_****_*****_*************_*****_**********************_****_***_*******************************_*******_***************_******___
//