# STOCKHOLM 1.0
#=GF ID 1.25.40.180/FF/000081
#=GF DE Nonsense-mediated mRNA decay protein 2
#=GF AC 1.25.40.180/FF/000081
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 81.839
#=GS 4lunU00/1-316      AC P38798
#=GS 4lunU00/1-316      OS Saccharomyces cerevisiae S288C
#=GS 4lunU00/1-316      DE Nonsense-mediated mRNA decay protein 2
#=GS 4lunU00/1-316      DR CATH; 4lun; U:1-315; 
#=GS 4lunU00/1-316      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS 4lunU00/1-316      DR GO; GO:0000184; GO:0005515; GO:0005737; GO:0005844; GO:0006310; GO:0070478; 
#=GS P38798/1-313       AC P38798
#=GS P38798/1-313       OS Saccharomyces cerevisiae S288C
#=GS P38798/1-313       DE Nonsense-mediated mRNA decay protein 2
#=GS P38798/1-313       DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS P38798/1-313       DR GO; GO:0000184; GO:0005515; GO:0005737; GO:0005844; GO:0006310; GO:0070478; 
#=GS A0A0D1C452/44-376  AC A0A0D1C452
#=GS A0A0D1C452/44-376  OS Ustilago maydis 521
#=GS A0A0D1C452/44-376  DE Chromosome 9, whole genome shotgun sequence
#=GS A0A0D1C452/44-376  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago maydis; 
#=GS A9VDI9/16-326      AC A9VDI9
#=GS A9VDI9/16-326      OS Monosiga brevicollis
#=GS A9VDI9/16-326      DE Predicted protein
#=GS A9VDI9/16-326      DR ORG; Eukaryota; Choanoflagellida; Salpingoecidae; Monosiga; Monosiga brevicollis; 
#=GS Q74Z42/1-309       AC Q74Z42
#=GS Q74Z42/1-309       OS Eremothecium gossypii ATCC 10895
#=GS Q74Z42/1-309       DE AGR364Cp
#=GS Q74Z42/1-309       DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; 
#=GS A0A0L8VP94/1-313   AC A0A0L8VP94
#=GS A0A0L8VP94/1-313   OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VP94/1-313   DE NMD2p Protein involved in the nonsense-mediated mRNA decay (NMD) pathway
#=GS A0A0L8VP94/1-313   DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS N1P4K0/4-315       AC N1P4K0
#=GS N1P4K0/4-315       OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1P4K0/4-315       DE Nmd2p
#=GS N1P4K0/4-315       DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LSJ5/1-313       AC B3LSJ5
#=GS B3LSJ5/1-313       OS Saccharomyces cerevisiae RM11-1a
#=GS B3LSJ5/1-313       DE Nonsense-mediated mRNA decay protein 2
#=GS B3LSJ5/1-313       DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WFF0/1-313       AC G2WFF0
#=GS G2WFF0/1-313       OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WFF0/1-313       DE K7_Nmd2p
#=GS G2WFF0/1-313       DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C8Z9M0/1-313       AC C8Z9M0
#=GS C8Z9M0/1-313       OS Saccharomyces cerevisiae EC1118
#=GS C8Z9M0/1-313       DE Nmd2p
#=GS C8Z9M0/1-313       DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZSY4/1-313       AC A6ZSY4
#=GS A6ZSY4/1-313       OS Saccharomyces cerevisiae YJM789
#=GS A6ZSY4/1-313       DE Protein involved in the nonsense-mediated mRNA decay (NMD) pathway
#=GS A6ZSY4/1-313       DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 11
4lunU00/1-316              -----------------MDDGRKKELHDLNTRAWNGEEVFPLKS--KKLDSSIKRNTGFIKKLKKGFVKGSESSLLKDLSEASLEKYLSEIIVTVTECLLNVLNKNDDVIAAVEIISGLHQRFNGR-FTSPLLGAFLQAFENPSVDI-------ESERDELQRITRVKGNLRVFTELYLVGVFRTLDDIESKD---AIPNFLQ-----KKTGRKDPLLFSILR--------------------EILNYKFKLGFTTTI--ATAFIKKFAPLFRDDDNSWDDLIYDSKLKGALQSLFKNFIDATFARATELHKKVNKLQREHQKCQIRTGKLRDEYVEEYDKLLPIFIRFKTSAITLGEFFKLEIPELHHHHHH
P38798/1-313               -----------------MDDGRKKELHDLNTRAWNGEEVFPLKS--KKLDSSIKRNTGFIKKLKKGFVKGSESSLLKDLSEASLEKYLSEIIVTVTECLLNVLNKNDDVIAAVEIISGLHQRFNGR-FTSPLLGAFLQAFENPSVDI-------ESERDELQRITRVKGNLRVFTELYLVGVFRTLDDIESKD---AIPNFLQ-----KKTGRKDPLLFSILR--------------------EILNYKFKLGFTTTI--ATAFIKKFAPLFRDDDNSWDDLIYDSKLKGALQSLFKNFIDATFARATELHKKVNKLQREHQKCQIRTGKLRDEYVEEYDKLLPIFIRFKTSAITLGEFFKLEIPELEGA---
A0A0D1C452/44-376          ------------------REKKRQQLCAGNQQVWSSGPV--SIT--KALDSSIKKNTAFVKRVKQSIGQDARDALLKDLPLLNLEKYLQELIQAVPEGLSRCLTAK-DCFAAAEILSAFHVRFGGKAFSSPLTNALELSLAPPSKTLYQDATAEQKERDEAARVARQRHLLRAVGELALVKAVGHSSESTGAP---WLFDVLKHLLATDREHSNAPLLIAILKGLGQSFLAPLDTQDAASGLSDTLNSTLTLGDAVNVDQIQAIDPSSAPLVSP--------AWQTKFRELIETYFRTLVN----RIVKEHRRLQDHDRRNHEAYIRSGQIFEDRQQRYERMTKSFERIREWGCILSELLGVPMPKLDSSE--
A9VDI9/16-326              GTAATQEEALQLKEAIESRQQQRRIDRDLNI---NAEEHRPNRDFFRQLDSTVKKTTGFVKKLKTTMNEGSQAQLLADFDKLNLSRYLEEVTASLA---VAGQIKNASLGVTVALAVQLHRRYEE--FADGFRQALVAILAT------------TPDKADKEALAHFRFTFRLFAEMVLIGVFN--EDNEGKELCKRIANYLK----KDKEFDLLALSVHLVEHLALDLAAQLPR--------EQLGILHKFELEATL--DTPF-----PDLAP------------NMKALLVRWYSKVAE----RLVREKKALDKRLRQDQNQVEIKGELSSERSEGTRAMQSAYTELLQYTKVLANVLDQDMPDLP-----
Q74Z42/1-309               -----------------MNDERRQQLFELNSEAWSGIDAFPNKT--SKLDSSIKRNTGFIKKLKQGITKDSKDSLMKDIGEVLLEKYLSEVITGTNESLAKVPNKTEDITAAVEVVSGLHQRFGEK-FTLRLLELYMFNFVNPPDDA-------EGEKEELARTNRLKSNIRLFTELYLVNVFSNFDSI-SKD---NLPKFMA-----KSTSSA---FLCVLK--------------------TTLSYKYKYGARLSI--ATLFAKKYAGFF-SEHSSLDRYIREPSLKEALWALFKAMTEAVFKRTVELDKKMKKLQKEHQRAQIRTGKLVDEYIEEYNKIEPVFERFVSAAQSLGESLNLTAPELSSSD--
A0A0L8VP94/1-313           -----------------MDDGRKKELHDLNTRAWNGEEVFPLKS--KKLDSSIKRNTGFIKKLKKGFVKGSESSLLKDLSEASLEKYLSEIIVTVTECLLNVLNKNDDVIAAVEIISGLHQRFNGR-FTSPLLGAFLQAFENPSVDI-------ESERDELQRITRVKGNLRVFTELYLVGVFRTLDDIESKD---AIPNFLQ-----KKTGRKDPLLFSILR--------------------EILNYKFKLGFTTTI--ATAFIKKFAPLFRDDDNSWDDLIYDSKLKGALQSLFKNFIDATFARATELHKKVNKLQREHQKCQIRTGKLRDEYVEEYDKLLPIFIRFKTSAITLGEFFKLEIPELEGA---
N1P4K0/4-315               ------------------QDGRKKELHDLNTRAWNGEEVFPLKS--KKLDSSIKRNTGFIKKLKKGFVKGSESSLLKDLSEASLEKYLSEIIVTVTECLLNVLNKNDDVIAAVEIISGLHQRFNGR-FTSPLLGAFLQAFENPSVDI-------ESERDELQRITRVKGNLRVFTELYLVGVFRTLDDIESKD---AIPNFLQ-----KKTGRKDPLLFSILR--------------------EILNYKFKLGFTTTI--ATAFIKKFAPLFRDDDNSWDDLIYDSKLKGALQSLFKNFIDATFARATELHKKVNKLQREHQKCQIRTGKLRDEYVEEYDKLLPIFIRFKTSAITLGEFFKLEIPELEGA---
B3LSJ5/1-313               -----------------MDDGRKKELHDLNTRAWNGEEVFPLKS--KKLDSSIKRNTGFIKKLKKGFVKGSESSLLKDLSEASLEKYLSEIIVTVTECLLNVLNKNDDVIAAVEIISGLHQRFNGR-FTSPLLGAFLQAFENPSVDI-------ESERDELQRITRVKGNLRVFTELYLVGVFRTLDDIESKD---AIPNFLQ-----KKTGRKDPLLFSILR--------------------EILNYKFKLGFTTTI--ATAFIKKFAPLFRDDDNSWDDLIYDSKLKGALQSLFKNFIDATFARATELHKKVNKLQREHQKCQIRTGKLRDEYVEEYDKLLPIFIRFKTSAITLGEFFKLEIPELEGA---
G2WFF0/1-313               -----------------MDDGRKKELHDLNTRAWNGEEVFPLKS--KKLDSSIKRNTGFIKKLKKGFVKGSESSLLKDLSEASLEKYLSEIIVTVTECLLNVLNKNDDVIAAVEIISGLHQRFNGR-FTSPLLGAFLQAFENPSVDI-------ESERDELQRITRVKGNLRVFTELYLVGVFRTLDDIESKD---AIPNFLQ-----KKTGRKDPLLFSILR--------------------EILNYKFKLGFTTTI--ATAFIKKFAPLFRDDDNSWDDLIYDSKLKGALQSLFKNFIDATFARATELHKKVNKLQREHQKCQIRTGKLRDEYVEEYDKLLPIFIRFKTSAITLGEFFKLEIPELEGA---
C8Z9M0/1-313               -----------------MDDGRKKELHDLNTRAWNGEEVFPLKS--KKLDSSIKRNTGFIKKLKKGFVKGSESSLLKDLSEASLEKYLSEIIVTVTECLLNVLNKNDDVIAAVEIISGLHQRFNGR-FTSPLLGAFLQAFENPSVDI-------ESERDELQRITRVKGNLRVFTELYLVGVFRTLDDIESKD---AIPNFLQ-----KKTGRKDPLLFSILR--------------------EILNYKFKLGFTTTI--ATAFIKKFAPLFRDDDNSWDDLIYDSKLKGALQSLFKNFIDATFARATELHKKVNKLQREHQKCQIRTGKLRDEYVEEYDKLLPIFIRFKTSAITLGEFFKLEIPELEGA---
A6ZSY4/1-313               -----------------MDDGRKKELHDLNTRAWNGEEVFPLKS--KKLDSSIKRNTGFIKKLKKGFVKGSESSLLKDLSEASLEKYLSEIIVTVTECLLNVLNKNDDVIAAVEIISGLHQRFNGR-FTSPLLGAFLQAFENPSVDI-------ESERDELQRITRVKGNLRVFTELYLVGVFRTLDDIESKD---AIPNFLQ-----KKTGRKDPLLFSILR--------------------EILNYKFKLGFTTTI--ATAFIKKFAPLFRDDDNSWDDLIYDSKLKGALQSLFKNFIDATFARATELHKKVNKLQREHQKCQIRTGKLRDEYVEEYDKLLPIFIRFKTSAITLGEFFKLEIPELEGA---
#=GC scorecons             0000000000000000034546654545593335655543535400659996796696969779454356644497696444496799495634545254445465364367666464794974640954574475434645542330000000547757446557363469565974975664225644565000364657500000565343246544675000000000000000000006495444656344560046562333574534222212223233557457344754445222294554575546448557434554957357437554553447365343534956464445959333000
#=GC scorecons_70          ______________________*______*__________________****************______*___****_____*****_*_*____________*__*__*****_*_**_**____*___*__*____*________________**_*__*__*_*___*_*_**_**_**________*_____*___*______________*___**_______________________*____*_*________*_*_____*__________________*__*___*_________*_____*___*__*__*______*_*__*__*________*_*_______*_*______*_*______
#=GC scorecons_80          _____________________________*__________________***_**__*_*_****__________**_*_____*_***_*____________________________**_**____*______*_____________________*__*___________*___**_**_____________________*___________________________________________*_______________________*__________________*__*___*_________*_____*______*__*______*_*__*__*________*_________*________*_*______
#=GC scorecons_90          _____________________________*__________________***__*__*_*_*__*__________*__*_____*__**_*_____________________________*_*_____*___________________________________________*___*__*__________________________________________________________________*___________________________________________________________*______________________*__________________________*________*_*______
//