# STOCKHOLM 1.0
#=GF ID 1.25.40.180/FF/000104
#=GF DE Nonsense-mediated mRNA decay protein 2
#=GF AC 1.25.40.180/FF/000104
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 32.098
#=GS P38798/372-573      AC P38798
#=GS P38798/372-573      OS Saccharomyces cerevisiae S288C
#=GS P38798/372-573      DE Nonsense-mediated mRNA decay protein 2
#=GS P38798/372-573      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS P38798/372-573      DR GO; GO:0000184; GO:0005515; GO:0005737; GO:0005844; GO:0006310; GO:0070478; 
#=GS Q74Z42/383-550      AC Q74Z42
#=GS Q74Z42/383-550      OS Eremothecium gossypii ATCC 10895
#=GS Q74Z42/383-550      DE AGR364Cp
#=GS Q74Z42/383-550      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; 
#=GS A0A0L8VP94/375-573  AC A0A0L8VP94
#=GS A0A0L8VP94/375-573  OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VP94/375-573  DE NMD2p Protein involved in the nonsense-mediated mRNA decay (NMD) pathway
#=GS A0A0L8VP94/375-573  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS N1P4K0/374-575      AC N1P4K0
#=GS N1P4K0/374-575      OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1P4K0/374-575      DE Nmd2p
#=GS N1P4K0/374-575      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LSJ5/375-573      AC B3LSJ5
#=GS B3LSJ5/375-573      OS Saccharomyces cerevisiae RM11-1a
#=GS B3LSJ5/375-573      DE Nonsense-mediated mRNA decay protein 2
#=GS B3LSJ5/375-573      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WFF0/375-573      AC G2WFF0
#=GS G2WFF0/375-573      OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WFF0/375-573      DE K7_Nmd2p
#=GS G2WFF0/375-573      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 6
P38798/372-573              NSKNINLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQLIPSFMIFHKIRTLIMYMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKNDRQLNMNMKSALENIITLLYPPSVKSLNVTVKTI
Q74Z42/383-550              -------------------GIDELSCRYWLESLDNKATRKRLIKFFIEQQDWSKLKLYARFIATNAETMKDVKEELIECLDNGFRSQLHTNRINVKNIIFFCEMVKFNLVPGFLIFHKIRTLIFNLLVPNNIEILTVLFENFGRFLINKPEFSPQMEKMLELLSEKKKDHRLSVTSKNALENLLLLI---------------
A0A0L8VP94/375-573          ---NINLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQLIPSFMIFHKIRTLIMNMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKNDRQLNMNMKGALENIITLLYPPSVKSLNVTVKTI
N1P4K0/374-575              NSKNINLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQLIPSFMIFHKIRTLIMYMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKNDRQLNMNMKSALENIITLLYPPSVKSLNVTVKTI
B3LSJ5/375-573              ---NINLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQLIPSFMIFHKIRTLIMNMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKNDRQLNMNMKGALENIITLLYPPSVKSLNVTVKTI
G2WFF0/375-573              ---NINLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRILKFFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHSNKINVKNIIFFSEMIKFQLIPSFMIFHKIRTLIMNMQVPNNVEILTVLLEHSGKFLLNKPEYKELMEKMVQLIKDKKNDRQLNMNMKGALENIITLLYPPSVKSLNVTVKTI
#=GC scorecons              0002222222222222222399699499944499999995955999694999999459599999955394663495955999999999959699999999959969949695969999999994564999969999995954969959999644499995595469959559555494999955495222222222222222
#=GC scorecons_70           ____________________*****_***___*******_*__***_*_******__*_******___*_**__*_*__**********_***********_*****_***_*_*********____***********_*__****_*****___****__*__***_*__*____*_****___*________________
#=GC scorecons_80           ____________________**_**_***___*******_*__***_*_******__*_******___*_____*_*__**********_*_*********_**_**_*_*_*_*********____****_******_*__*_**_****____****__*___**_*__*____*_****___*________________
#=GC scorecons_90           ____________________**_**_***___*******_*__***_*_******__*_******___*_____*_*__**********_*_*********_**_**_*_*_*_*********____****_******_*__*_**_****____****__*___**_*__*____*_****___*________________
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