# STOCKHOLM 1.0
#=GF ID 1.20.210.10/FF/000012
#=GF DE Cytochrome c oxidase subunit I
#=GF AC 1.20.210.10/FF/000012
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 19.955
#=GS A9A1V9/3-506      AC A9A1V9
#=GS A9A1V9/3-506      OS Nitrosopumilus maritimus SCM1
#=GS A9A1V9/3-506      DE Cytochrome c oxidase subunit I
#=GS A9A1V9/3-506      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus maritimus; 
#=GS A0A087S8W7/3-502  AC A0A087S8W7
#=GS A0A087S8W7/3-502  OS Marine Group I thaumarchaeote SCGC AAA799-B03
#=GS A0A087S8W7/3-502  DE Cytochrome c oxidase subunit 1
#=GS A0A087S8W7/3-502  DR ORG; Archaea; Thaumarchaeota; Marine Group I thaumarchaeote SCGC AAA799-B03; 
#=GS A0A2E2J4Q3/4-498  AC A0A2E2J4Q3
#=GS A0A2E2J4Q3/4-498  OS Thaumarchaeota archaeon
#=GS A0A2E2J4Q3/4-498  DE Cytochrome c oxidase subunit I
#=GS A0A2E2J4Q3/4-498  DR ORG; Archaea; Thaumarchaeota; Thaumarchaeota archaeon; 
#=GS A0A2Z2HN30/3-503  AC A0A2Z2HN30
#=GS A0A2Z2HN30/3-503  OS Candidatus Nitrosomarinus catalina
#=GS A0A2Z2HN30/3-503  DE Cytochrome c oxidase polypeptide 1
#=GS A0A2Z2HN30/3-503  DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosomarinus; Candidatus Nitrosomarinus catalina; 
#=GS S2E2E6/3-508      AC S2E2E6
#=GS S2E2E6/3-508      OS Candidatus Nitrosarchaeum limnium BG20
#=GS S2E2E6/3-508      DE Putative cytochrome c oxidase, subunit I
#=GS S2E2E6/3-508      DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosarchaeum; Candidatus Nitrosarchaeum limnium; 
#=GS A0A0D5C4M0/3-501  AC A0A0D5C4M0
#=GS A0A0D5C4M0/3-501  OS Candidatus Nitrosopumilus adriaticus
#=GS A0A0D5C4M0/3-501  DE Cytochrome c oxidase subunit 1
#=GS A0A0D5C4M0/3-501  DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Candidatus Nitrosopumilus adriaticus; 
#=GF SQ 6
A9A1V9/3-506              LELQKPRPIWQIMFSTHHTDVGLLYLIMSLGFLFLGGALALAIRAELFLPGAQIIGDAMTFNRIFTVHGTTLIFLFIIPFASAVGNYFVPIMVRYKDMAYPKLNAIAFWMIPPSGALIWLGFADFTWYATPPYSIISAPGPAADMWIFGLKILGVSSVLGAINFVVTILKCKHPDMSIGQVPLLAWSFLSSSLIILVAIPTFAAALLMLLTDRLGVTGFFNPAMGGDPIAYAHLFWFTFHPEVYVLVIPAIGMMYEIIPRFSRKPIYSFNSGIFAFVLLSIVGFSSWAHHMYATGMSFTEKTVFMVGTLAAVPASAMHVYNFIATMWNGRIKFSTPMMWAVGGIALFFSAGAGGVANAAMPLDFTTHDTYWVVGHFHLFVMGTIAFGSIGFLYYMYPYVTGRMYNEAMGKIHFFLSFIGTILVFFTQHVLGLYGMPRRIFDYPPIPEWIAMNQIASIGAMVIGVSMVVFLVNMVYSAGKGEPANPEDPFGVGGKYYYPFESKNP--
A0A087S8W7/3-502          LELQKPRPIWQIMFSTHHTDVGLLYLIMSLGFLFLGGALALAIRAELFLPGAQIIGDAMTFNRIFTVHGTTLIFLFIIPFASSVGNYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALIWLGFADFTWYATPPYSIISAPGPAADMWIFGLKILGVSSVLGAINFIVTILKCKHPDMSIGQVPLLAWSFLSSSLIILVAIPTFAAALLMLLTDRLGVTGFFNPAMGGDPIAYAHLFWFTFHPEVYVLVIPAIGMMYEIIPRFSRKPIYSFNSGIFAFVLLSIVGFSSWAHHMYATGMSFTEKTVFMVGTLAAVPASAMHVYNFIATMWNGRIKFSTPMMWSVGGIALFFSAGAGGVANAAMPLDFTTHDTYWVVGHFHLFVMGTIAFGSIGFLYYMYPYVTGRMYNEAMGKIHFILSFVGTILVFFTQHVLGLYGMPRRIFDYPPIPEWIAMNQIASIGAMVIGVSMVVFLVNMIYSAGKGEPANPEDPFGVGGKYYYPFE------
A0A2E2J4Q3/4-498          -ELSKPRPIWQIMFSTHHTDVGLLYLITSLAFLFMGGALALLIRAELFLPGAQVIGDAMTFNRIFTVHGTTLIFLFILPFASAVGNYFVPIMVRYKDMAYPKLNAIAFWMIPPGGALIWLGFADFTWYATPPYSIISAPGPAADMWIFGLKILGISSVLGAINFVVTIMKCKHPDMSLGQVPLLAWSFLSSSLIILVAIPTFAAALLMLLTDRLGVSGFFNPAMGGDPIAXQXLFWFTFHPEVYVLVIPAIGMMYEXIPRFSRKPIYSYNSGIFAFVLLAVVGFSSWAHHMYASGMSFTEKTVFMVGTLAAVPASAMHVFNFVATMWNGRIKFLTPMMWAVGGIALFFSAGAGGVANAAMPLDFSTXDTYWVVGHFHLFVMGTIAFGSIGFLYYMYPYVTGRMYNETMGKIHFIMSFIGTVLVFFTQHILGLYGMPRRIFDYPPIPEWIAMNQIASIGAMIIGVSMVIFLANXIYSAGKGKLADTDXPFGVGGKYY----------
A0A2Z2HN30/3-503          LELQKPRPIWQIMFSTHHTDVGLLYLISSLTFLFLGGSLALGIRAELFLPGSQIIADAMTFNRIFTVHGTTLIFLFIIPFASAVGNYYVPIMVRYKDMAYPKLNAIAFWMIPPAGVLIWLGFADFTWYATPPYSIISAPGPAADMWIFGLKILGISSVLGALNFVVTILKCKHPDMSIGQIPLMAWSFLSSSLIIMVAIPTFAAALLMLLTDRLGVSGFFNPAMGGDPISYAHLFWFTFHPEVYVLVIPAIGMMYEIIPRFSRKPIYSYSSGVFAFVMLSIVGFSSWAHHMYATGMSFTEKTVFMVGTLAAVPASAMHVFNFVATMWNARIRFSTPMMWAVGGIALFFSAGAGGVVNSAMPLDFTTHDTYWVVGHFHLFVMGTIAFGSIGYLYYMFPYVTGRMYNETLGKIHFILSFIGTVLVFFTQHVLGLYGMPRRIYDYPPIPEWIAMNQIASVGAMIIGISMAVFLANMIHSAGKGKFADTDDPFGLGGKYYYPFEA-----
S2E2E6/3-508              LELQKPRPIWQIMFSTHHTDVGLLYLITSIAFLFMGGALALAIRAELFLPGSQIIADSMTFNRIFTVHGTTLIFLFIIPFASAVGNYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALIWLGFADFTWYATPPYSIISAPGPAADMWIFGLKILGISSVLGAINFIVTILKCKHPDMSLGQVPLLAWSFLASSLIILVAIPTFAAALLMLLTDRLGVSGFFNPAMGGDPIAYAHLFWFTFHPEVYVLVIPAIGMMYEIIPRFSRKPIFSHSSGIFAFVLLSVVSFSSWAHHMYATGMSFTEKTVFMIGTLAAVPASAMHVFNFIATMWNGRIRFATPMMWAVGGIALFFSAGAGGVVNAAMPLDFQTHDSYWVVGHFHLFVMGTIAFGSIGYLYYMFPYVTGRMYNEKMGKVHFVMSFIGTVLVFFTQHVLGLYGMPRRIFDYPPIPEWIAMNQIASVGAMIIGVSMVIFLINMIHSSAKGKIADTDDPFDLGGKYYYPFESKNPHH
A0A0D5C4M0/3-501          LELQKPRPIWQIMFSTHHTDVGLLYLITSLGFLFLGGSLALAIRAELFLPGAQIITDAMTFNRIFTVHGTTLIFLFILPFASAVGNYYVPIMVRYKDMAYPKLNAIAFWMIPPSGALIWLGFADFTWYATPPYSIISAPGPAADMWIFGLKILGISSVLGAINFVVTILKCKHPDMSIGQVPLLAWSYLSSSLIILVAIPTFAAALLMLLTDRLGVSGFFNPAMGGDPIAYAHLFWFTFHPEVYVLVIPAIGMMYEIIPRFSRKPIYSYNSGIFAFVLLSIVGFSSWAHHMFATGMSFTEKTVFMVGTLAAVPASAMHVFNFIATMWNGRIKFLSPMMWSVGGIALFFGAGAGGVVNSAMPLDFSTHDTYWVVGHFHLFVMGTIAFGSIGFLYYMFPYVTGRMYNETLGKVHFVMSFIGTILVFFTQHVLGLYGMPRRIFDYPPIPEWIAMNQIATVGAMIIGVSMAIFLANMIYSSGKGKLANTEDPFGVGGKYYYPF-------
#=GC scorecons            59969999999999999999999999949749996996999499999999969795979999999999999999999699997999979999999999999999999999999497999999999999999999999999999999999999997999999799799979999999969979979998979999979999999999999999999969999999999997565999999999999999999999995999999999796699799997966979999999989699999999999799999999999997996999997997947999969999999979999995969999994959799999999999999999999979999799999999994699799569979969999999799999999997999999999999999769997997996699595779679963966659976999995553100000
#=GC scorecons_70         _**************************_**_******_***_*********_***_*********************************************************_***************************************************************_****************************************************_*_***********************_***********__***************************************************************_*********************_*_******_*_***************************************_******_****************************************************_***_*_***_****_*_**_*********__________
#=GC scorecons_80         _**_***********************_**_***_**_***_*********_***_*_*******************_***********************************_*_************************************************_************_***********_**************************_************____***********************_***********__*********__*_**********_****************************_*****_**_*_*****_***************_*_******_*_*_**************************_**********__**_**__*****_***********************************_*********__**_*_*_*__**__*____**__*****__________
#=GC scorecons_90         _**_***********************_*__***_**_***_*********_*_*_*_*******************_****_****_*************************_*_**************************************_******_**_***_********_**_**_***_*_*****_********************_************____***********************_*********_*__**_****_*__*_********_*_***********_*************_**_*****_**_*__****_********_******_*_******_*_*_*********************_****_**********__**_**__**_**_*******_**********_***************__***_**_**__**_*___*__**__*____**__*****__________
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