# STOCKHOLM 1.0
#=GF ID 1.20.1640.10/FF/000031
#=GF DE PaTChed family
#=GF AC 1.20.1640.10/FF/000031
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 79.392
#=GS H2L0G5/595-799      AC H2L0G5
#=GS H2L0G5/595-799      OS Caenorhabditis elegans
#=GS H2L0G5/595-799      DE Protein patched homolog 3
#=GS H2L0G5/595-799      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS H2L0G5/595-799      DR GO; GO:0016324; GO:0018996; GO:0031410; 
#=GS Q09614/624-829      AC Q09614
#=GS Q09614/624-829      OS Caenorhabditis elegans
#=GS Q09614/624-829      DE Protein patched homolog 1
#=GS Q09614/624-829      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q09614/624-829      DR GO; GO:0005887; GO:0018996; 
#=GS Q09540/101-282      AC Q09540
#=GS Q09540/101-282      OS Caenorhabditis elegans
#=GS Q09540/101-282      DE PaTChed family
#=GS Q09540/101-282      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS A0A3P6N6C5/482-687  AC A0A3P6N6C5
#=GS A0A3P6N6C5/482-687  OS Caenorhabditis elegans
#=GS A0A3P6N6C5/482-687  DE Protein patched homolog 1
#=GS A0A3P6N6C5/482-687  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS B7P4P1/364-543      AC B7P4P1
#=GS B7P4P1/364-543      OS Ixodes scapularis
#=GS B7P4P1/364-543      DE Patched-2 protein, putative
#=GS B7P4P1/364-543      DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; 
#=GS A0A454XSL2/568-789  AC A0A454XSL2
#=GS A0A454XSL2/568-789  OS Pristionchus pacificus
#=GS A0A454XSL2/568-789  DE Ptc-3
#=GS A0A454XSL2/568-789  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0A1I7U3Y8/527-742  AC A0A1I7U3Y8
#=GS A0A1I7U3Y8/527-742  OS Caenorhabditis tropicalis
#=GS A0A1I7U3Y8/527-742  DE Uncharacterized protein
#=GS A0A1I7U3Y8/527-742  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS A0A2G5V7K0/595-803  AC A0A2G5V7K0
#=GS A0A2G5V7K0/595-803  OS Caenorhabditis nigoni
#=GS A0A2G5V7K0/595-803  DE Uncharacterized protein
#=GS A0A2G5V7K0/595-803  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A8XVY4/601-809      AC A8XVY4
#=GS A8XVY4/601-809      OS Caenorhabditis briggsae
#=GS A8XVY4/601-809      DE Protein CBR-PTC-3
#=GS A8XVY4/601-809      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS G0NL84/617-821      AC G0NL84
#=GS G0NL84/617-821      OS Caenorhabditis brenneri
#=GS G0NL84/617-821      DE Uncharacterized protein
#=GS G0NL84/617-821      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A2H2I343/605-805  AC A0A2H2I343
#=GS A0A2H2I343/605-805  OS Caenorhabditis japonica
#=GS A0A2H2I343/605-805  DE Uncharacterized protein
#=GS A0A2H2I343/605-805  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS E3M0R5/489-688      AC E3M0R5
#=GS E3M0R5/489-688      OS Caenorhabditis remanei
#=GS E3M0R5/489-688      DE CRE-PTC-3 protein
#=GS E3M0R5/489-688      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS H3F8M6/568-789      AC H3F8M6
#=GS H3F8M6/568-789      OS Pristionchus pacificus
#=GS H3F8M6/568-789      DE Uncharacterized protein
#=GS H3F8M6/568-789      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0A2G5V7H3/603-811  AC A0A2G5V7H3
#=GS A0A2G5V7H3/603-811  OS Caenorhabditis nigoni
#=GS A0A2G5V7H3/603-811  DE Uncharacterized protein
#=GS A0A2G5V7H3/603-811  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS G0PI08/601-799      AC G0PI08
#=GS G0PI08/601-799      OS Caenorhabditis brenneri
#=GS G0PI08/601-799      DE Uncharacterized protein
#=GS G0PI08/601-799      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A261APX0/509-706  AC A0A261APX0
#=GS A0A261APX0/509-706  OS Caenorhabditis remanei
#=GS A0A261APX0/509-706  DE Uncharacterized protein
#=GS A0A261APX0/509-706  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS H3FMC2/646-855      AC H3FMC2
#=GS H3FMC2/646-855      OS Pristionchus pacificus
#=GS H3FMC2/646-855      DE Uncharacterized protein
#=GS H3FMC2/646-855      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A8WSD1/617-838      AC A8WSD1
#=GS A8WSD1/617-838      OS Caenorhabditis briggsae
#=GS A8WSD1/617-838      DE Protein CBG03294
#=GS A8WSD1/617-838      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS E3LG91/603-822      AC E3LG91
#=GS E3LG91/603-822      OS Caenorhabditis remanei
#=GS E3LG91/603-822      DE CRE-PTC-1 protein
#=GS E3LG91/603-822      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A0A2H2HXY0/611-830  AC A0A2H2HXY0
#=GS A0A2H2HXY0/611-830  OS Caenorhabditis japonica
#=GS A0A2H2HXY0/611-830  DE Uncharacterized protein
#=GS A0A2H2HXY0/611-830  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS A0A2G5V0Y6/601-822  AC A0A2G5V0Y6
#=GS A0A2G5V0Y6/601-822  OS Caenorhabditis nigoni
#=GS A0A2G5V0Y6/601-822  DE Uncharacterized protein
#=GS A0A2G5V0Y6/601-822  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS G0P2F8/737-935      AC G0P2F8
#=GS G0P2F8/737-935      OS Caenorhabditis brenneri
#=GS G0P2F8/737-935      DE CBN-PTC-1 protein
#=GS G0P2F8/737-935      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A1I7T7I0/615-818  AC A0A1I7T7I0
#=GS A0A1I7T7I0/615-818  OS Caenorhabditis tropicalis
#=GS A0A1I7T7I0/615-818  DE Uncharacterized protein
#=GS A0A1I7T7I0/615-818  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GF SQ 23
H2L0G5/595-799              -----------------RLYSHELN-------RE---RRQFHPLASTSIADMLEEFSQFNYIIIVIGYILMVIYAAFTQGRFQGWWLAVQSNVALAICGVILVTISSICGLGFATHLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEIIN--IC-NKNEIGVLLKETGMSVMLTSINNILAFISGYVLPIPALRSFCSQTAILLAFNLIFLMFIFPAMIGIDLRRQRKGKRD--
Q09614/624-829              ------------------------NVDEDG--NE---RRTLHPLASTSIADMLEEFCQFNYTIILAGYALMLAYAIVTQARFDNCLPATESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLTLGIGVDNMFMLLHNYRDVVK--LAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSSILLTFNFIAILTIYPAIISIDLRRKKAQRRDLV
Q09540/101-282              -------------------------------------RNSVNSTIPSSLLDMLSCWHML----------LLLILDLTTAFRLQN------HQWGFALAGVLVVTFASVAGIGLATWFGIEFNAATTQIVPFLTLGIGVDNMFMLLHNYRDVVK--LAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSSILLTFNFIAILTIYPAIISIDLRRKKAQRRDFD
A0A3P6N6C5/482-687          ------------------------NVDEDG--NE---RRTLHPLASTSIADMLEEFCQFNYTIILAGYALMLAYAIVTQARFDNCLPATESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLTLGIGVDNMFMLLHNYRDVVK--LAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSSILLTFNFIAILTIYPAIISIDLRRKKAQRRDLV
B7P4P1/364-543              --------------------------------------------------ETLHDFSEVNPTRVPLGCLLMMGYAWVVLWRP---LDPPGSRGLLGALGVLLAVGAVGAGLGLCALLGLPFNAATTRVLPFLALGLGLDNLFLLAHAYEDAAKARIP-PQERTGQVLKCVGTSVLLVWASTVGGFVAAALIPVPALRAFVFQAALLHTFAVAAMLLLFPAAVSVDLRRRRRSHR---
A0A454XSL2/568-789          RWHASNIIQTWQRNFTKNLYHHKAN-------TQVEGVRQFHPLASTSIADMLEEFSQFNYGIIIMGYILMLIYACFTQARIEGRWLAIQSNVHLAIWGVVWVTFSSISGLGFATLLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEISN--IV-RKHEMGVLLKETGMSVLVTSTNNILAFLAGMVLPIPALKSFCSQTAILLAFNLLFLMIIFPAFIAVDLKRRRRG-----
A0A1I7U3Y8/527-742          -------ITSWQRNFTKKLYKHELN-------AE---RRVFHPLASTSIADMLEEFSQFNYMIIVIGYILMVIYAAFTQGRFQGWWLAIQSNVALAICGVILVTFSSICGLGFATHLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEIIN--IC-DKNEIGILLKETGMSVMLTSINNILAFISGYVLPIPALRSFCSQTAILLLFNLIFLMFIFPAMIGIDLRRQRKGKRDL-
A0A2G5V7K0/595-803          -------------NFTKRLYKHEIN-------QE---RRVFHPLASTSIADMLEEFSQFNYIIIVIGYILMVIYAAFTQGRFQGWWLAVQSNVALAIAGVMLVTFSSICGLGFATHLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEIIN--IC-HKNEIGVLLKETGMSVMLTSINNILAFISGYVLPIPALRSFCSQTAILLAFNLIFLMFIFPAMIGIDLRRQRKGKRD--
A8XVY4/601-809              -------------NFTKKLYRHELN-------QE---RRVFHPLASTSIADMLEEFSQFNYIIIVIGYILMVIYAAFTQGRFQGWWLAVQSNVALAIAGVMLVTFSSICGLGFATHLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEIIN--IC-HKNEIGVLLKETGMSVMLTSINNILAFISGYVLPIPALRSFCSQTAILLAFNLIFLMFIFPAMIGIDLRRQRKGKRD--
G0NL84/617-821              -----------------KLYTHESN-------AE---RRVFHPLASTSIADMLEEFSQFNYMIIVIGYILMVIYAAFTQGRFQGWWLAIQSNVALAITGVILVTFSSICGLGFATHLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEIIN--IC-NKNEIGILLKETGMSVMLTSTNNILAFISGYVLPIPALRSFCSQTAILLLFNLLFLMFIFPAMIGIDLRRQRKGKRD--
A0A2H2I343/605-805          ---------------------HEQN-------KE---KRVFHPLASTSIADMLEEFSQFNYIIIVIGYVLMVIYAAFTQGRFQGWWFAVQSNVALAISGVILVTFSSICGLGFATHLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEIIN--IC-DRNEIGILLKETGMSVMVTSINNILAFISGYVLPIPALRSFCSQTAILLLFNLIFLMFIFPAMIGIDLRRQRKGKRD--
E3M0R5/489-688              ---------------------HEAN-------KE---QRVFHPLASTSIADMLEEFSQFNYMIIVIGYILMVIYAAFTQGRFQGWWLAVQSNVALAIAGVILVTYSSICGLGFATHLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEIIN--IC-DKNEIGVLLKETGMSVMLTSINNILAFISGYVLPIPALRSFCSQTAILLLFNLIFLMFIFPAMIGIDLRRQRRGKR---
H3F8M6/568-789              RWHASNIIQTWQRNFTKNLYHHKAN-------TQVEGVRQFHPLASTSIADMLEEFSQFNYGIIIMGYILMLIYACFTQARIEGRWLAIQSNVHLAIWGVVWVTFSSISGLGFATLLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEISN--IV-RKHEMGVLLKETGMSVLVTSTNNILAFLAGMVLPIPALKSFCSQTAILLAFNLLFLMIIFPAFIAVDLKRRRRG-----
A0A2G5V7H3/603-811          -------------NFTKRLYKHEIN-------QE---RRVFHPLASTSIADMLEEFSQFNYIIIVIGYILMVIYAAFTQGRFQGWWLAVQSNVALAIAGVMLVTFSSICGLGFATHLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEIIN--IC-HKNEIGVLLKETGMSVMLTSINNILAFISGYVLPIPALRSFCSQTAILLAFNLIFLMFIFPAMIGIDLRRQRKGKRD--
G0PI08/601-799              -----------------------SN-------AE---RRVFHPLASTSIADMLEEFSQFNYMIIVIGYILMVIYAAFTQGRFQGWWLAIQSNVALAITGVILVTFSSICGLGFATHLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEIIN--IC-NKNEIGILLKETGMSVMLTSTNNILAFISGYVLPIPALRSFCSQTAILLLFNLLFLMFIFPAMIGIDLRRQRKGKRD--
A0A261APX0/509-706          ------------------------N-------KE---QRVFHPLASTSIADMLEEFSQFNYMIIVIGYILMVIYAAFTQGRFQGWWLAVQSNVALAIAGVILVTYSSICGLGFATHLGINFNAATTQVVPFLSLGLGIDDMFLLLHNYDEIIN--IC-DKNEIGVLLKETGMSVMLTSINNILAFISGYVLPIPALRSFCSQTAILLLFNLIFLMFIFPAMIGIDLRRQRKGKRD--
H3FMC2/646-855              -------------------HKHNFETTENGVEKE---RRTIHPLASTSIADMLEEFCQFNYTIILVGYGLMLVYAMVTQLRTERCLPAAHSCMGLAFAGVVTVTFASVAGLGMATWFGIEFNAATTQIVPFLTLGIGVDNMFMLLHNYHDVVA--MS-NRNEMGVLLRETGMSILCTSTNNILSFLAGTLLPIPALRSFCAQSTILLTFNFIAILTIYPAVISIDLRRRKAGKRD--
A8WSD1/617-838              -------LQAWQRNFTKSLYTHEANFDADG--NE---RRTLHPLASTSIADMLEEFCQFNYTIIFAGYALMLAYAIITQARFDSCLPATESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLTLGIGVDNMFMLLHNYRDVVK--LAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSSILLTFNFIAILTIYPAIISIDLRRKKAQRRDL-
E3LG91/603-822              ----------WQRNFTKSIYTHVANFDEHG--NE---RRTLHPLASTSIADMLEEFCQFNYTIIFAGYALMLAYAIVTQARFDNCLPATESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLTLGIGVDNMFMLLHNYRDVVK--LAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSSILLTFNFIAILTIYPAIISIDLRRKKAQRRDLL
A0A2H2HXY0/611-830          --------QAWQRNFTKSLYNHEANVDEEG--NE---RRTLHPLASTSIADMLEEFCQFNYGIILAGYGLMLAYAIITQARFDSCLPSSESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLTLGIGVDNMFMLLHNYRDVVK--LAGGHAEIAVLMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSSILLTFNFIAILTVYPAIISIDMKRRKAQRRD--
A0A2G5V0Y6/601-822          -------LQAWQRNFTKSLYTHEANFDADG--NE---RRTLHPLASTSIADMLEEFCQFNYTIIFAGYALMLAYAIITQARFDSCLPATESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLTLGIGVDNMFMLLHNYRDVVK--LAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSSILLTFNFIAILTIYPAIISIDLRRKKAQRRDL-
G0P2F8/737-935              ---------------------------------E---RRTLHPLASTSIADMLEEFCQFNYTIIFAGYALMLAYAIVTQARFDSCLPATESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLTLGIGVDNMFMLLHNYRDVVK--LAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSSILLTFNFIAILTIYPAIISIDLRRKKAQRRDLL
A0A1I7T7I0/615-818          --------------------------DENG--NE---RRTLHPLASTSIADMLEEFCQFNYTIIFAGYALMLAYAIVTQARFDSCLPATESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLTLGIGVDNMFMLLHNYRDVVK--LAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSTILLTFNFIAILTIYPAIISIDLRRKKTQRRDLL
#=GC scorecons              000000000000011111121321400000002500056346666667668797785777646744774986588357749544344644845488549955876676598967846985999999878999599696968969797957655006414547666867779797647768887596584689899988975955897597564664779958579889574557510
#=GC scorecons_70           ______________________________________*__***************_****_**__**_**__**__**_*______*__*___**__**__***_*__***_**_***_************_***************_**____*_____*___**********_**_****_*__*_***********_*__***_**_*__*_****_*_*****_*___*___
#=GC scorecons_80           _______________________________________________*__******_***___*__*__**__**__*__*_________*___**__**__**__*__***_**__**_*******_****_**_*_*_**_*****_____________*___*__*****___**_****_*__*__**********_*__***_**______****_*_*****_________
#=GC scorecons_90           __________________________________________________*_*__*_____________**__**_____*_________*___*___**_________***__*__**_*******_****_**_*_*_**_*_*_*_________________*____*_*________*__*_____*******_*__*__**__*_________**_*__**_*_________
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