# STOCKHOLM 1.0 #=GF ID 1.20.1540.10/FF/000027 #=GF DE Rhomboid family intramembrane serine protease #=GF AC 1.20.1540.10/FF/000027 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 89.897 #=GS Q8PEG2/9-225 AC Q8PEG2 #=GS Q8PEG2/9-225 OS Xanthomonas campestris pv. campestris str. ATCC 33913 #=GS Q8PEG2/9-225 DE Uncharacterized protein #=GS Q8PEG2/9-225 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas campestris; #=GS Q8ZXS6/12-182 AC Q8ZXS6 #=GS Q8ZXS6/12-182 OS Pyrobaculum aerophilum str. IM2 #=GS Q8ZXS6/12-182 DE Integral membrane protein (Rhomboid related), putative #=GS Q8ZXS6/12-182 DR ORG; Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum; Pyrobaculum aerophilum; #=GS B1L4C8/12-225 AC B1L4C8 #=GS B1L4C8/12-225 OS Candidatus Korarchaeum cryptofilum OPF8 #=GS B1L4C8/12-225 DE Rhomboid family protein #=GS B1L4C8/12-225 DR ORG; Archaea; Candidatus Korarchaeota; Candidatus Korarchaeum; Candidatus Korarchaeum cryptofilum; #=GS Q74EV8/8-233 AC Q74EV8 #=GS Q74EV8/8-233 OS Geobacter sulfurreducens PCA #=GS Q74EV8/8-233 DE Rhomboid-related membrane protein #=GS Q74EV8/8-233 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; Geobacter sulfurreducens; #=GS O67346/10-226 AC O67346 #=GS O67346/10-226 OS Aquifex aeolicus VF5 #=GS O67346/10-226 DE Uncharacterized protein #=GS O67346/10-226 DR ORG; Bacteria; Aquificae; Aquificae; Aquificales; Aquificaceae; Aquifex; Aquifex aeolicus; #=GS R4NQG5/9-219 AC R4NQG5 #=GS R4NQG5/9-219 OS Thermotoga maritima MSB8 #=GS R4NQG5/9-219 DE Uncharacterized protein #=GS R4NQG5/9-219 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga maritima; #=GS Q9X0H3/9-219 AC Q9X0H3 #=GS Q9X0H3/9-219 OS Thermotoga maritima MSB8 #=GS Q9X0H3/9-219 DE Uncharacterized protein #=GS Q9X0H3/9-219 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga maritima; #=GS B5YGY5/10-226 AC B5YGY5 #=GS B5YGY5/10-226 OS Thermodesulfovibrio yellowstonii DSM 11347 #=GS B5YGY5/10-226 DE Rhomboid family protein #=GS B5YGY5/10-226 DR ORG; Bacteria; Nitrospirae; Nitrospira; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio; Thermodesulfovibrio yellowstonii; #=GS A9WG42/10-224 AC A9WG42 #=GS A9WG42/10-224 OS Chloroflexus aurantiacus J-10-fl #=GS A9WG42/10-224 DE Rhomboid family protein #=GS A9WG42/10-224 DR ORG; Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus; Chloroflexus aurantiacus; #=GS B8E0G4/10-220 AC B8E0G4 #=GS B8E0G4/10-220 OS Dictyoglomus turgidum DSM 6724 #=GS B8E0G4/10-220 DE Rhomboid family protein #=GS B8E0G4/10-220 DR ORG; Bacteria; Dictyoglomi; Dictyoglomia; Dictyoglomales; Dictyoglomaceae; Dictyoglomus; Dictyoglomus turgidum; #=GS A0A3M1WJ21/10-224 AC A0A3M1WJ21 #=GS A0A3M1WJ21/10-224 OS Chloroflexi bacterium #=GS A0A3M1WJ21/10-224 DE Rhomboid family intramembrane serine protease #=GS A0A3M1WJ21/10-224 DR ORG; Bacteria; Chloroflexi; Chloroflexi bacterium; #=GS A0A0A3WAV7/8-225 AC A0A0A3WAV7 #=GS A0A0A3WAV7/8-225 OS Xanthomonas phaseoli pv. phaseoli #=GS A0A0A3WAV7/8-225 DE Membrane protein #=GS A0A0A3WAV7/8-225 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas phaseoli; #=GS A0A3Q9PZ33/8-225 AC A0A3Q9PZ33 #=GS A0A3Q9PZ33/8-225 OS Xanthomonas sp. ISO98C4 #=GS A0A3Q9PZ33/8-225 DE Membrane protein #=GS A0A3Q9PZ33/8-225 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas sp. ISO98C4; #=GS A0A2S6Y7G2/8-225 AC A0A2S6Y7G2 #=GS A0A2S6Y7G2/8-225 OS Xanthomonas axonopodis pv. begoniae #=GS A0A2S6Y7G2/8-225 DE Rhomboid family intramembrane serine protease #=GS A0A2S6Y7G2/8-225 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas axonopodis; #=GS Q5GTY6/21-237 AC Q5GTY6 #=GS Q5GTY6/21-237 OS Xanthomonas oryzae pv. oryzae KACC 10331 #=GS Q5GTY6/21-237 DE Uncharacterized protein #=GS Q5GTY6/21-237 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas oryzae; #=GS A5IN89/9-219 AC A5IN89 #=GS A5IN89/9-219 OS Thermotoga petrophila RKU-1 #=GS A5IN89/9-219 DE Rhomboid family protein #=GS A5IN89/9-219 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga petrophila; #=GS A0A1V9HAR7/8-225 AC A0A1V9HAR7 #=GS A0A1V9HAR7/8-225 OS Xanthomonas phaseoli pv. dieffenbachiae #=GS A0A1V9HAR7/8-225 DE Rhomboid family intramembrane serine protease #=GS A0A1V9HAR7/8-225 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas phaseoli; #=GS A0A0W7XFV9/8-225 AC A0A0W7XFV9 #=GS A0A0W7XFV9/8-225 OS Xanthomonas phaseoli pv. manihotis #=GS A0A0W7XFV9/8-225 DE Uncharacterized protein #=GS A0A0W7XFV9/8-225 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas phaseoli; #=GS A0A3S3Q4N5/8-225 AC A0A3S3Q4N5 #=GS A0A3S3Q4N5/8-225 OS Xanthomonas axonopodis pv. manihotis str. CIO151 #=GS A0A3S3Q4N5/8-225 DE Rhomboid family intramembrane serine protease #=GS A0A3S3Q4N5/8-225 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas phaseoli; #=GS A0A0H2X3Q5/9-225 AC A0A0H2X3Q5 #=GS A0A0H2X3Q5/9-225 OS Xanthomonas campestris pv. campestris str. 8004 #=GS A0A0H2X3Q5/9-225 DE Uncharacterized protein #=GS A0A0H2X3Q5/9-225 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas campestris; #=GF SQ 20 Q8PEG2/9-225 --KKSAPRWAVPLLFAAVWLAYLWS----------------ISRPTE----------ARNTLWLDWGALSIGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLLGGAASNLAAIFAIGT------PDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWAVLQVVFAYIGPA-----FGMVAWSAHIAGFVFGIVYGLYVRAAIARRL-R Q8ZXS6/12-182 ---------------------------------------------------------------------ASEFV---E--NPLNP----KVILSMFAHAGIFHILGNMLFLYKYGDNVEAAMGRLRYLLFYLAYCYVAVAAQMLFASATGLPRQMLAPMVGASGAISGVLGAYIYLWPGSSTYRCFCIRYACYCRKMAARYDIAIWAGFQFLLPLL--------EPSVAVFAHTGGLIAGVALAPLFAKRENVERLR B1L4C8/12-225 --FRPKHRATISLIVINS-IIYLATSYNNFF----------LSVSDY--------------WVTVGGFSPSLLTHTD---------QWYRFLTSMFLHADIFHIFFNMYFLFFAGRAVEDALGSTRFIFLYLISGLAASIFHSAYSFIGGLTS-YAIPAIGASGAISGVLGAYLLFYPGTSLVVCIPVFFFPLCFPMRASLYILFWFAMQVIYGFARI------AGGVAVFAHAGGFLAGIALLPILANRRRIGLLR Q74EV8/8-233 NPTRRLPVVSVALIILNC-AAFLFDRYTGHYEPLIVETARGLVRTRQ----------FVGGLSADYSLVPAVLT---S--HPLL--ALPTIITSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRFRFVVFYLGCGAVAALAQVASAPG------SDIPMVGASGAVAGVMGAYLLLFPHARILTLVPIIFFFTFIEVPAFIIIGWWVLIQFLNANWLGGGEL--RGGVAYFAHIGGFVAGIVGLWLFGAARR----- O67346/10-226 --SRTFPIVNLSIIVACS-LIWLYE----------------WSLTDEVIYTFQGAVTKFELFLREWGLVPVEL-----------PQKPYTLLTHMFLHGSWGHIIGNMWFLWVFGDNVEDKLGKFRYIIFYILCGLGAALTQTFISLAFGG---ANVPMVGASGAISGVLGAYMKMFPHARVLALVPVFIFLTLMELPAVIFIGLWFFIQIINGIITLPFIG--YGGVAWYAHIGGFITGYLLVDYFRKRSY----- R4NQG5/9-219 -PSRKKPYVTIALILINV-VVFVYE----------------LMLNDR----------ELLLFMYRYGLVPARYTVERV--KEALGFSLLPFITHMFLHGGFWHILGNMWFLWIFGDNTEDEMGHVGYTLFYLSAGIFAALTQFVFTLH------STTPMVGASGAVSGVMGAYFVLFPYSRIVTLFPIFFFLTLVEIPAFYYLMIWFFIQVLNGLVG-------SYGIAWWAHIGGFVYGMIWGYILRMRRIHR--- Q9X0H3/9-219 -PSRKKPYVTIALILINV-VVFVYE----------------LMLNDR----------ELLLFMYRYGLVPARYTVERV--KEALGFSLLPFITHMFLHGGFWHILGNMWFLWIFGDNTEDEMGHVGYTLFYLSAGIFAALTQFVFTLH------STTPMVGASGAVSGVMGAYFVLFPYSRIVTLFPIFFFLTLVEIPAFYYLMIWFFIQVLNGLVG-------SYGIAWWAHIGGFVYGMIWGYILRMRRIHR--- B5YGY5/10-226 --RRYTPYMTWLIISLNC-FVFLFE----------------LMFSKE----------DLDYLFHIFGVIPARYMLIDT--LPIDPLYYLPFLTSMFLHGGWFHLISNMWIMWIFADNVEDKMGSFRFLIFYLLCGFGAGWIHCLTNPA------STIPTVGASGAISGVLGAYMIMFPYAKVITLFPILFFPFFFALPAIFYILMWFFIQLFSGLGSLLSPT-DVGGVAWWAHVGGFIFGIVLHRLFVIKKRLHM-- A9WG42/10-224 --SRTFPAVNWALLAANV-IVFLL-----------------MVGNER----------LTEAWVATLALVPARFL---A--NPLDPTQLLTIFTSMFMHGGWFHLFSNMLALYIFGDNVEDRMGSQRYLIFYLLCGVAAAFAHILFNPT------SPIPTVGASGALSGVLAAYLLFFPTARVVTLIPIFFLPWLVEVPAIVYLGLWFISQLANGLFSIIIDVQEMGGVAWWAHIGGFVAGLVLAPLFRQRRYVRR-Y B8E0G4/10-220 --SRRCPIVNMTLIFLNI-FVFLWE----------------MLLPQR----------VLESIIFKYGVVPYRFF---S--LNLLPHGILTLFTSMFLHGGWSHIIGNMLYLYIFGDNVEDAMGHFRYLVFYLLSGILAGLTQIFFNTN------PYMPAIGASGAIAGVLGAYMRYFPLAKVLTMTFFVFFIDFIYIPAFLYIGLWFIMQISSGIFSLLINI--SGGIAWWAHIGGFVFGFILAKHFRRRRY----W A0A3M1WJ21/10-224 --SRTFPAVNWALLAANV-IVFLL-----------------MVGNER----------LTEAWVATLALVPARFL---A--NPLDPTQLLTIFTSMFMHGGWFHLFSNMLALYIFGDNVEDRMGSQRYLIFYLLCGVAAAFAHILFNPT------SPIPTVGASGALSGVLAAYLLFFPTARVVTLIPIFFLPWLVEVPAIVYLGLWFISQLANGLFSIIIDVQEMGGVAWWAHIGGFVAGLVLAPLFRQRRYVRR-Y A0A0A3WAV7/8-225 -RKKPTPRWAVPLLFAAVWLAYLWS----------------ISRPGE----------ARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGT------PDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPA-----FGMVAWSAHIAGFVFGIVYGLYVRAAIARRL-R A0A3Q9PZ33/8-225 -RKKPTPRWAVPLLFAAVWLAYLWS----------------ISRPGE----------ARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGT------PDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPA-----FGMVAWSAHIAGFVFGIVYGLYVRAAIARRL-R A0A2S6Y7G2/8-225 -RKKPTPRWAVPLLFAAVWLAYLWS----------------ISRPGE----------ARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGT------PDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPA-----FGMVAWSAHIAGFVFGIVYGLYVRAAIARRL-R Q5GTY6/21-237 -RKKPTPRWAVPLLFATVWLAYLWS----------------ISRPGE----------ARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLMFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGT------PDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPA-----FGMVAWSAHIAGFVFGIVYGLSVRAAIARRL-- A5IN89/9-219 -PSRKKPYVTMALILINV-VVFVYE----------------LMLNDR----------ELLLFMYRYGLVPARYTVERI--KETLGFSLLPFITHMFLHGGFWHILGNMWFLWIFGDNTEDEMGHFGYTLFYLSAGIFAALAQFVFTLH------STTPMVGASGAVSGVMGAYFVLFPYSRIVTLFPFFFFLTLVEIPAFYYLMIWFFIQVLNGLVG-------SYGIAWWAHIGGFVYGMIWGYILRMRRIHR--- A0A1V9HAR7/8-225 -RKKPTPRWAVPLLFAAVWLAYLWS----------------ISRPGE----------ARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGT------PDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPA-----FGMVAWSAHIAGFVFGIVYGLYVRAAIARRL-R A0A0W7XFV9/8-225 -RKKPTPRWAVPLLFAAVWLAYLWS----------------ISRPGE----------ARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGT------PDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPA-----FGMVAWSAHIAGFVFGIVYGLYVRAAIARRL-R A0A3S3Q4N5/8-225 -RKKPTPRWAVPLLFAAVWLAYLWS----------------ISRPGE----------ARNTLWLDWGALSSGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGT------PDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWALLQVVFAYIGPA-----FGMVAWSAHIAGFVFGIVYGLYVRAAIARRL-R A0A0H2X3Q5/9-225 --KKSAPRWAVPLLFAAVWLAYLWS----------------ISRPTE----------ARNTLWLDWGALSIGVSNLGDWWATLRDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLLGGAASNLAAIFAIGT------PDRVIIGASGAVSALIGTYLALFPGAKLGVVLPLGVFLEFIRVPAPLLIGAWAVLQVVFAYIGPA-----FGMVAWSAHIAGFVFGIVYGLYVRAAIARRL-R #=GC scorecons 01363263343465344414456330000000000000000443434000000000022224233364454443112211234232435455846979655396569636846784559536943755667844844645544444340000004335579999967665769636793655355475356535546793447449444954454442200000354796399769874956443455354324202 #=GC scorecons_70 ______*_____*_________*_____________________________________________________________________*_****____**__**__*_***___*__**__*___***__*__*_____________________**********_***___**_*______*___*______**___*__*___*_________________**__*******_*_________________ #=GC scorecons_80 ____________________________________________________________________________________________*__***____*___*___*__**___*___*__*____**__*_________________________*****_*___*_*___**________*__________**______*___*_________________**__**__***_*_________________ #=GC scorecons_90 _______________________________________________________________________________________________*_*____*___*___*___*___*___*________*____________________________*****_______*____*____________________*______*___*__________________*__**__**__*_________________ //