# STOCKHOLM 1.0
#=GF ID 1.20.1310.20/FF/000021
#=GF DE Erythrocyte membrane protein 1, PfEMP1
#=GF AC 1.20.1310.20/FF/000021
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 66.130
#=GS Q8IK37/880-912_943-1022_1075-1206      AC Q8IK37
#=GS Q8IK37/880-912_943-1022_1075-1206      OS Plasmodium falciparum 3D7
#=GS Q8IK37/880-912_943-1022_1075-1206      DE Erythrocyte membrane protein 1, PfEMP1
#=GS Q8IK37/880-912_943-1022_1075-1206      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS Q8IK37/880-912_943-1022_1075-1206      DR GO; GO:0020002; GO:0020013; GO:0020030; GO:0020033; GO:0020035; GO:0046789; GO:0050839; GO:0098609; 
#=GS Q8IBW7/908-1178                        AC Q8IBW7
#=GS Q8IBW7/908-1178                        OS Plasmodium falciparum 3D7
#=GS Q8IBW7/908-1178                        DE Erythrocyte membrane protein 1, PfEMP1
#=GS Q8IBW7/908-1178                        DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS Q8IBW7/908-1178                        DR GO; GO:0020002; GO:0020013; GO:0020030; GO:0020033; GO:0020035; GO:0050839; GO:0098609; 
#=GS O96296/916-1054_1086-1204              AC O96296
#=GS O96296/916-1054_1086-1204              OS Plasmodium falciparum 3D7
#=GS O96296/916-1054_1086-1204              DE Erythrocyte membrane protein 1, PfEMP1
#=GS O96296/916-1054_1086-1204              DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS O96296/916-1054_1086-1204              DR GO; GO:0020002; GO:0020013; GO:0020030; GO:0020033; GO:0020035; GO:0046789; GO:0050839; GO:0098609; 
#=GS Q9U0G5/896-925_970-1043_1074-1191      AC Q9U0G5
#=GS Q9U0G5/896-925_970-1043_1074-1191      OS Plasmodium falciparum 3D7
#=GS Q9U0G5/896-925_970-1043_1074-1191      DE Erythrocyte membrane protein 1, PfEMP1
#=GS Q9U0G5/896-925_970-1043_1074-1191      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS Q9U0G5/896-925_970-1043_1074-1191      DR GO; GO:0020002; GO:0020013; GO:0020030; GO:0020033; GO:0020035; GO:0050839; GO:0098609; 
#=GS A0A2I0BR82/880-912_943-1022_1075-1206  AC A0A2I0BR82
#=GS A0A2I0BR82/880-912_943-1022_1075-1206  OS Plasmodium falciparum NF54
#=GS A0A2I0BR82/880-912_943-1022_1075-1206  DE Erythrocyte membrane protein 1
#=GS A0A2I0BR82/880-912_943-1022_1075-1206  DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS W7K594/879-912_943-1022_1075-1206      AC W7K594
#=GS W7K594/879-912_943-1022_1075-1206      OS Plasmodium falciparum NF54
#=GS W7K594/879-912_943-1022_1075-1206      DE Uncharacterized protein
#=GS W7K594/879-912_943-1022_1075-1206      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS W7KIS5/103-373                         AC W7KIS5
#=GS W7KIS5/103-373                         OS Plasmodium falciparum NF54
#=GS W7KIS5/103-373                         DE Uncharacterized protein
#=GS W7KIS5/103-373                         DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A2I0BPD8/908-1178                    AC A0A2I0BPD8
#=GS A0A2I0BPD8/908-1178                    OS Plasmodium falciparum NF54
#=GS A0A2I0BPD8/908-1178                    DE Erythrocyte membrane protein 1
#=GS A0A2I0BPD8/908-1178                    DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A2I0BUZ6/916-1054_1086-1204          AC A0A2I0BUZ6
#=GS A0A2I0BUZ6/916-1054_1086-1204          OS Plasmodium falciparum NF54
#=GS A0A2I0BUZ6/916-1054_1086-1204          DE Erythrocyte membrane protein 1
#=GS A0A2I0BUZ6/916-1054_1086-1204          DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS W7KCX8/916-1054_1086-1204              AC W7KCX8
#=GS W7KCX8/916-1054_1086-1204              OS Plasmodium falciparum NF54
#=GS W7KCX8/916-1054_1086-1204              DE Uncharacterized protein
#=GS W7KCX8/916-1054_1086-1204              DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A2I0BZR1/896-925_970-1043_1074-1191  AC A0A2I0BZR1
#=GS A0A2I0BZR1/896-925_970-1043_1074-1191  OS Plasmodium falciparum NF54
#=GS A0A2I0BZR1/896-925_970-1043_1074-1191  DE Erythrocyte membrane protein 1
#=GS A0A2I0BZR1/896-925_970-1043_1074-1191  DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GF SQ 11
Q8IK37/880-912_943-1022_1075-1206              -VAELFKKPDTLKQACPTKYG---SKAPTSWKCIPTK----------------------DTGS----VCIPPRRRKLYVGELTKWA----------ESKQVAQAQTTDTQTQVDAASTSTSQTSLLRDAFIQSAAVETFFLWHRYK-------KEWELRQ----------------------LQNGTIPTDFLRQMFYTLGDYRDILFSGSNDTTSGSKDTSSGSNDNLKHIVLNAGGDQKSKDEMQTIQTAISSYFSNSGKPSTSVTPVTQPSGTTPQALWSKYAESIWNGMVCALTYRDS--GDKG--GKPQKVEA
Q8IBW7/908-1178                                ---------GNLNDACSQKYGY--PQRHWGWKCIPSGDNTTTREGSGEATKSGATTGSGKDGATGGSICVPPRRRRLYVTPLTRLA----------GGDGNTQAGET---TQGNGASTETPEAS-LRRAFVESAAVETFFLWHKYKTVKQKELDEKKKQQQENVLSQLSGDTISGEQNPQSKLEKGEIPDDFKRLMFYTLGDYRDIVVRGVADDKNGGNN-----------IILNASGN---KQDMDKIQKKIDKILKQSASKP----GQEPNS--KREEFWTTHGPDIWKGMVCALTYKESKNGDKTIVKDGAVY--
O96296/916-1054_1086-1204                      TVKNALTNNDNLTDACKLKYGPGGKERFPNWKCVSSGEKSVATAGS-----SGATGKSGDKGA----ICVPPRRRRLYVGGLTKLTSAGTSSESPQGGSESSRASDV---SQGNGGDDITTTES-LRKWFIETAAIETFFLWHRYK-------KEWEAQQ-----------------------KSGTIPLDFLRLMFYTLGDYRDILVRGVADDKNGGNN-----------IILNASGNKDEKQKMEKIQEKIEQILPTSGNKETR--GPQ-NSVNDRQSLWDRIAEHVWHGMVCALTYKDDDNGLKGVVKKPQK---
Q9U0G5/896-925_970-1043_1074-1191              -VKTALE--GDLGEACRQKYEY-GREKFPNWKCI-------------------------KDGA----ICVPPRRRKLYLGGFKRLTDGTAVS------SEATQAGTP---SQSPKGDAL------LLTAFVETAAVETFFLWHKYK-------QEKKKPQ-----------------------ESGEIPDDFLRQMFYTLGDYRDILVRGVADDKNGGNN-----------IILNASGNKEDMEKMKKIQQEIDKILEKSGSEAAS--GAQKNSGISREKWWDKHAPSIWDGMVCALTYNTD--TASG--TAPTQIQ-
A0A2I0BR82/880-912_943-1022_1075-1206          -VAELFKKPDTLKQACPTKYG---SKAPTSWKCIPTK----------------------DTGS----VCIPPRRRKLYVGELTKWA----------ESKQVAQAQTTDTQTQVDAASTSTSQTSLLRDAFIQSAAVETFFLWHRYK-------KEWELRQ----------------------LQNGTIPTDFLRQMFYTLGDYRDILFSGSNDTTSGSKDTSSGSNDNLKHIVLNAGGDQKSKDEMQTIQTAISSYFSNSGKPSTSVTPVTQPSGTTPQALWSKYAESIWNGMVCALTYRDS--GDKG--GKPQKVEA
W7K594/879-912_943-1022_1075-1206              IVAELFKNPDPLKQACPTKYG---SKAPTSWKCIPTK----------------------DTGS----VCIPPRRRKLYVGELTKWA----------ESKQVAQAQTTDTQTQVDAASTSTSQTSLLRDAFIQSAAVETFFLWHRYK-------KEWELRQ----------------------LQNGTIPPDFLRQMFYTLGDYRDILFSGSNDTTSGSKDTSSGSNDNLKHIVLNAGGDQKSKDEMQTIQTAISSYFSNSGKPSTSVTPVTQPSGTTPQALWSKYAESIWNGMVCALTYRDS--GDKG--GKPQKVEA
W7KIS5/103-373                                 ---------GNLNDACSQKYGY--PQRHWGWKCIPSGDNTTTREGSGEATKSGATTGSGKDGATGGSICVPPRRRRLYVTPLTRLA----------GGDGNTQAGET---TQGNGASTETPEAS-LRRAFVESAAVETFFLWHKYKTVKQKELDEKKKQQQENVLSQLSGDTISGEQNPQSKLEKGEIPDDFKRLMFYTLGDYRDIVVRGVADDKNGGNN-----------IILNASGN---KQDMDKIQKKIDKILKQSASKP----GQEPNS--KREEFWTTHGPDIWKGMVCALTYKESKNGDKTIVKDGAVY--
A0A2I0BPD8/908-1178                            ---------GNLNDACSQKYGY--PQRHWGWKCIPSGDNTTTREGSGEATKSGATTGSGKDGATGGSICVPPRRRRLYVTPLTRLA----------GGDGNTQAGET---TQGNGASTETPEAS-LRRAFVESAAVETFFLWHKYKTVKQKELDEKKKQQQENVLSQLSGDTISGEQNPQSKLEKGEIPDDFKRLMFYTLGDYRDIVVRGVADDKNGGNN-----------IILNASGN---KQDMDKIQKKIDKILKQSASKP----GQEPNS--KREEFWTTHGPDIWKGMVCALTYKESKNGDKTIVKDGAVY--
A0A2I0BUZ6/916-1054_1086-1204                  TVKNALTNNDNLTDACKLKYGPGGKERFPNWKCVSSGEKSVATAGS-----SGATGKSGDKGA----ICVPPRRRRLYVGGLTKLTSAGTSSESPQGGSESSRASDV---SQGNGGDDITTTES-LRKWFIETAAIETFFLWHRYK-------KEWEAQQ-----------------------KSGTIPLDFLRLMFYTLGDYRDILVRGVADDKNGGNN-----------IILNASGNKDEKQKMEKIQEKIEQILPTSGNKETR--GPQ-NSVNDRQSLWDRIAEHVWHGMVCALTYKDDDNGLKGVVKKPQK---
W7KCX8/916-1054_1086-1204                      TVKNALTNNDNLTDACKLKYGPGGKERFPNWKCVSSGEKSVATAGS-----SGATGKSGDKGA----ICVPPRRRRLYVGGLTKLTSAGTSSESPQGGSESSRASDV---SQGNGGDDITTTES-LRKWFIETAAIETFFLWHRYK-------KEWEAQQ-----------------------KSGTIPLDFLRLMFYTLGDYRDILVRGVADDKNGGNN-----------IILNASGNKDEKQKMEKIQEKIEQILPTSGNKETR--GPQ-NSVNDRQSLWDRIAEHVWHGMVCALTYKDDDNGLKGVVKKPQK---
A0A2I0BZR1/896-925_970-1043_1074-1191          -VKTALE--GDLGEACRQKYEY-GREKFPNWKCI-------------------------KDGA----ICVPPRRRKLYLGGFKRLTDGTAVS------SEATQAGTP---SQSPKGDAL------LLTAFVETAAVETFFLWHKYK-------QEKKKPQ-----------------------ESGEIPDDFLRQMFYTLGDYRDILVRGVADDKNGGNN-----------IILNASGNKEDMEKMKKIQQEIDKILEKSGSEAAS--GAQKNSGISREKWWDKHAPSIWDGMVCALTYNTD--TASG--TAPTQIQ-
#=GC scorecons                                 042223211659459944997201455434999744311111112200000222211225496000079799999799764767560001010000444545794450006945465535322509645976699799999997990000000594645900000000000000000000002549599399595999999999996669669666966600000000000979996963226559469944954563496443320063426922366359454654794999999995551264661244644210
#=GC scorecons_70                              ___________*__**__***_________****___________________________**____*************_***_*________________**_______*_____________**__***_*************________*____*_________________________*_**_**_*_*************_*_**__*****___________********___*__*__**__*___*__**____________*____*__*___*__**_********_____*_**__________
#=GC scorecons_80                              ___________*__**__**__________****___________________________*_____********_***__*_____________________*_______*_____________*___*___**********_**________*____*_________________________*_**_**_*_***********___*__*___*______________*****_*_______*__**__*______*_____________*_______*______**_********___________________
#=GC scorecons_90                              ___________*__**__**__________***____________________________*______*_*****_**_________________________*_______*_____________*___*___**_*******_**________*____*_________________________*_**_**_*_***********___*__*___*______________*_***_*_______*__**__*______*_____________*_______*_______*_********___________________
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