# STOCKHOLM 1.0
#=GF ID 1.20.1250.40/FF/000010
#=GF DE RNA Polymerase II (B) subunit
#=GF AC 1.20.1250.40/FF/000010
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 70.896
#=GS Q54S04/9-155         AC Q54S04
#=GS Q54S04/9-155         OS Dictyostelium discoideum
#=GS Q54S04/9-155         DE DNA-directed RNA polymerase II subunit rpb4
#=GS Q54S04/9-155         DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium discoideum; 
#=GS Q54S04/9-155         DR GO; GO:0003899; GO:0005634; GO:0005665; GO:0005737; GO:0006366; 
#=GS O02092/10-144        AC O02092
#=GS O02092/10-144        OS Caenorhabditis elegans
#=GS O02092/10-144        DE RNA Polymerase II (B) subunit
#=GS O02092/10-144        DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS B3S032/1-103         AC B3S032
#=GS B3S032/1-103         OS Trichoplax adhaerens
#=GS B3S032/1-103         DE Uncharacterized protein
#=GS B3S032/1-103         DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; 
#=GS F0Z769/10-138        AC F0Z769
#=GS F0Z769/10-138        OS Dictyostelium purpureum
#=GS F0Z769/10-138        DE RNA polymerase II core subunit
#=GS F0Z769/10-138        DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium purpureum; 
#=GS H3EKF5/7-55_105-191  AC H3EKF5
#=GS H3EKF5/7-55_105-191  OS Pristionchus pacificus
#=GS H3EKF5/7-55_105-191  DE Uncharacterized protein
#=GS H3EKF5/7-55_105-191  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS G0N9E9/11-144        AC G0N9E9
#=GS G0N9E9/11-144        OS Caenorhabditis brenneri
#=GS G0N9E9/11-144        DE Uncharacterized protein
#=GS G0N9E9/11-144        DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A1I7T0Y3/11-144    AC A0A1I7T0Y3
#=GS A0A1I7T0Y3/11-144    OS Caenorhabditis tropicalis
#=GS A0A1I7T0Y3/11-144    DE Uncharacterized protein
#=GS A0A1I7T0Y3/11-144    DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS E3LQD2/10-144        AC E3LQD2
#=GS E3LQD2/10-144        OS Caenorhabditis remanei
#=GS E3LQD2/10-144        DE CRE-RPB-4 protein
#=GS E3LQD2/10-144        DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A8XH66/10-144        AC A8XH66
#=GS A8XH66/10-144        OS Caenorhabditis briggsae
#=GS A8XH66/10-144        DE Protein CBR-RPB-4
#=GS A8XH66/10-144        DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5V0G9/10-144    AC A0A2G5V0G9
#=GS A0A2G5V0G9/10-144    OS Caenorhabditis nigoni
#=GS A0A2G5V0G9/10-144    DE Uncharacterized protein
#=GS A0A2G5V0G9/10-144    DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GF SQ 10
Q54S04/9-155                 SGIQEEEDLTTLKFPRDLKDA--KFLLNSEVAILLEHRKGISE----SEGTEFPQNTLLIHLYYNSINDIIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQ-NLEEFEIASLANLCPEISDEAKSLIPSLK-KMEDDELQAILDELSNLRKFN-
O02092/10-144                SDGQVEEDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQSSESK--DEIEEMSE-----------------VFIKTLNYARRMSRFKNRETIRAVRAIFSEK-HLHKFEVAQIANLCPENAEEAKALVPSLENKIEESELEEVLKDLQSKRTFQ-
B3S032/1-103                 --------------------------------MLLEHRKAQNEADELDEDQEMSE-----------------VFQKTLSHTKRFSKFKNKETIAAVRSLLNKH-NFHKFELASLANLCPETSDEAKSLMPSLNGKYDDEEMQQILDDIKQHIG---
F0Z769/10-138                -GFQDEEDLSTLKFPKDLKDA--KFLLNSEVAILLEHRKLGSE----NEGLEFTQ-----------------TFHKTLAYAEKFSRYKNKTSIKQVRAALSKQ-NLEEFQIASLANLCPETADEAKSLIPSLK-EMDEDALQAILDELSNLRKFN-
H3EKF5/7-55_105-191          TEEPVEEDASELKFPKEFESSACDALLTSEVFLLLEHRRAQSEQK--EEI-ELTE-----------------VFVKTLNYARRLSRFKNRETIRAVRAIFAPKSSIHKFEVAQIANLCPETAEEAKALIPSLETKVEDDELEEILKDLHSKKTFQS
G0N9E9/11-144                -DGHVEEDAAECKFPKEFETNTCDALLTAEVYLLLEHRRQSSENK--DEIEEMSE-----------------VFIKTLNYARRMSRFKNRETIRAVRAIFSEK-HLHKFEIAQIANLCPENAEEAKALVPSLENKIEESELEEILKDLQSKRTFQ-
A0A1I7T0Y3/11-144            -DGHVEEDAAECKFPKEFETNTCDALLTAEVYLLLEHRRQSNETK--DEIEEMSE-----------------VFIKTLNYARRMSRFKNRETIRAVRAIFSEK-HLHKFEVAQIANLCPENAEEAKALVPSLENKIEESELEEVLKDLQSKRTFQ-
E3LQD2/10-144                SDGQVEEDAAECKFPKEFETTTCDALLTAEVYLLLEHRRQSNESK--DEIEEMSE-----------------VFIKTLNYARRMSRFKNRETIRAVRAIFSEK-HLHKFEVAQIANLCPENAEEAKALVPSLENKIEESELEEVLKDLQSKRTFQ-
A8XH66/10-144                SDGQVEEDAAECKFPKEFELNTCDALLTAEVYLLLEHRRQSNETK--DEIEEMSE-----------------VFIKTLNYARRMSRFKNRETIRAVRAIFSEK-HLHKFEVAQIANLCPENAEEAKALVPSLENKIEESELEEVLKDLQSKRTFQ-
A0A2G5V0G9/10-144            SDGQVEEDAAECKFPKEFELNTCDALLTAEVYLLLEHRRQSNETK--DEIEEMSE-----------------VFIKTLNYARRMSRFKNRETIRAVRAIFSEK-HLHKFEVAQIANLCPENAEEAKALVPSLENKIEESELEEVLKDLQSKRTFQ-
#=GC scorecons               132435553332555444322123355335525999996335912005932955600000000000000000693999477575977996569559954665505666975956999999466999596999527476477647957744454530
#=GC scorecons_70            _________________________________******___*_____*__*__*__________________*_***_**_*_******_**__**________*_***_*__******__****_*_***__*_**_**__**_**________
#=GC scorecons_80            _________________________________*****____*_____*__*_____________________*_***_**_*_*****___*__**___________**_*__******___***_*_***__*_____*___*_**________
#=GC scorecons_90            _________________________________*****____*_____*__*_____________________*_***______*__**___*__**___________*__*__******___***_*_***____________*___________
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