# STOCKHOLM 1.0
#=GF ID 1.20.1250.20/FF/000982
#=GF DE CLN3 protein
#=GF AC 1.20.1250.20/FF/000982
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 94.314
#=GS Q54F25/9-204_237-411  AC Q54F25
#=GS Q54F25/9-204_237-411  OS Dictyostelium discoideum
#=GS Q54F25/9-204_237-411  DE Battenin
#=GS Q54F25/9-204_237-411  DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium discoideum; 
#=GS Q54F25/9-204_237-411  DR GO; GO:0000281; GO:0000331; GO:0005794; GO:0006907; GO:0006971; GO:0006972; GO:0008285; GO:0009992; GO:0030139; GO:0031152; GO:0031156; GO:0031589; GO:0050708; GO:0050709; GO:0050714; GO:0098609; 
#=GS A7RS40/60-429         AC A7RS40
#=GS A7RS40/60-429         OS Nematostella vectensis
#=GS A7RS40/60-429         DE Battenin
#=GS A7RS40/60-429         DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; 
#=GS A2FFJ5/12-383         AC A2FFJ5
#=GS A2FFJ5/12-383         OS Trichomonas vaginalis
#=GS A2FFJ5/12-383         DE CLN3 protein
#=GS A2FFJ5/12-383         DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS H3GX09/4-187_222-413  AC H3GX09
#=GS H3GX09/4-187_222-413  OS Phytophthora ramorum
#=GS H3GX09/4-187_222-413  DE Uncharacterized protein
#=GS H3GX09/4-187_222-413  DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora ramorum; 
#=GS A2ERW0/12-380         AC A2ERW0
#=GS A2ERW0/12-380         OS Trichomonas vaginalis
#=GS A2ERW0/12-380         DE CLN3 protein
#=GS A2ERW0/12-380         DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GF SQ 5
Q54F25/9-204_237-411          -------RNWISFHFMGNINNFSYCVVNAASGNLSAYFHNSKNIGIILWANIAFGLVSRLVNTFLIE-NVNSKLKIVVNCLFMSIGLIGVALSVYVNFGFCIAAIAFVGIASSFGESVILSYMKKFPAE--LVNGWSSGTGIAGVCGSLFYIAMV---AAGLSNSTIFYMMLPTVAVYFLLFF-FGLKVPNHLEEDRTDNHNNSNNSSNNTKKQRYIRCARL-----VWFNAVNLALVYFFEYVASVG---GADLALKKDPNNDNFFIANAFAIFSFCYQLGVLISRSSLQFVKI------------KHIGVITILQGINMVFWIIQAKYKMVTSVWVLFILMVYCGLLGGASYVNVFYLILHQKNIPNEDRELCINYAALLVTVGITLAACFILVMDHTFLASE-----
A7RS40/60-429                 I---------LAFYAFGALIYIVYSVIIAGAQDILAGTFIP--TAAVLVTNVGPYFLVTMLAPYFIH-NVPYSVRIVFIYACFTIGLFTIVYAK--EVYMKLVGICITSLGAGTGEVSFFTLTAFYEQV--TVSAYSAGTGTGFVLGPLYYTGLTTWGCVTPNRTMMIMAGSPLLYIILYIMMDKPHTRKKFQMQQAEFM-SGVEGTGKLTGKEK------LSTATRVLPLVISLFVAYVCEYVTIQAVITTMAFPTAPFPPRVH------YRYYIFIFLAGEFIARSYLAVISTLVKPETFSRIIVHRVWMLSLLLVLHLLFFLLAAWYRFIHSVWIVFTLIFTAGLLAGAVFANSFVIV--SETVLPRYKEFAMGFATIGMGAGTFLAGVIGLLAE---------PII
A2FFJ5/12-383                 VRK----RDKVAMFLLGSINNLPYVIGIASANRIVGQYKEPTYLGLSLAANTLSGLFARFINTWLASINVPYEVNFSINAAAMLAGLLGCAFSK--VLWLSLICVFLFGFSSSFGESVLLCYITIRKKQ-NLLTSWSSGTGMAGILGAGYSLLCA---SISFNYMWSFIAVTPIVFIYIYCFFGIIRRSPEETINQEALLNNNLINSEEEKRRNESVSCFNFKILKPVWWFMFNCGAVYFLEYVIQSL---YVHCSQNPK-STPKTYL---YALLNLMYQIGVFISRSSLALFKF------------PWVGLLTLGQAVFFAVWATQPYFYWM-KLWMMIIFMICVGLFGGCSYVNSFHLIMTNDQLTTKEKEMVTSWNAFFISLFIVFSAIFTFVSEQTYM--------
H3GX09/4-187_222-413          VHNAEQLRNLLAFWVLGFVNNIGYVIMIAGAQEIAA-----GGVGLVYLFDIFPALLVKLSGPYWFQ-LVSYRQRTIIGAVWMLLSFLVVAKGGN-SLWLQLLGVAFSGLQSGMMEASFLAMSSFYSSPVRCLTCWSSGTGLAGVGGYAWVGILHIWGGLSFQTTLELAIVFPVIYVLVFLFVLDGSKLPPKEVEQGN---GEMHDASTMGFRAK------MRFIMTLGPYIIPLATVYLAEYTMQTGVWSAIGFPVQSEEARASF-----YASAGLAYQAGVFISRSSGVLFQA-TR---------PVLYLMPALQVLLLGFFTLVAATHFW-YDWGLLVVCFVVGLLGGGVYVNAYTLL--SKEIPQSHVELALAAVSVGDTVGVMFADCAGLFLQGCLYSINHLPGA
A2ERW0/12-380                 --------QKITMIFVAISNNISFFIVLSSAQRIISRYNQPGFLPAIDLALSFSGLFAGSVNTALTQRNVSYDIRFLSIVILMGVGYIGCAFAP--QFWMCLVSVFLLGASCFFGESVIIGYMAYIKKS-SMMKSWGIGTGVSGIIGSLLAIMFI---DIEFSYSLSFLCFLPFVAIMAVSYFCILREKPPTLDTKPLVSENTETITENEEKLNSCSPDF----LKKVVYYFLTYDIIYFSQDVIATT---FLDCAQTQDYHATHKYI---FPLLMLFENIGILIFCTSLSFFQF------------PHLRYLTAFQVLNFFAWMLQGIYHWM-PIWYEFLSIFIVGSIAGLTYANTFHMILIDNKLTAREKELGSNVTTFSSTVAIVFDTMFGIIAEKTFLSAS----V
#=GC scorecons                20000002215552346245653736346464373512113214444334442336443344534340594633544333426246544363420024452743634263353459444534333333200353366499935562934423232000243442433523339353633335402233253222352211043223443232434000110310221722334342359527664233000233442332133231110007433262444946946665345430000000000004252355445452524435451543303392354345249655934759373551034354333495333234422554536433445435133210000001
#=GC scorecons_70             ________________*______*_*__*_*__*_____________________*_____________*_*__________*__*____*__________*__*___*______*___________________**_***___*_*_________________________*___*__________________________________________________*__________*__*_*___________________________*_________*__*_**________________________________________________*_________*___*__*_*_*______________*_____________________________________
#=GC scorecons_80             _______________________*_____________________________________________*_____________________________________________*______________________***_____*_________________________*_________________________________________________________________*________________________________*_________*__*___________________________________________________*_________*___*__*_*_*______________*_____________________________________
#=GC scorecons_90             _____________________________________________________________________*_____________________________________________*______________________***_____*_________________________*_________________________________________________________________*__________________________________________*__*___________________________________________________*_________*___*____*________________*_____________________________________
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