# STOCKHOLM 1.0
#=GF ID 1.10.8.970/FF/000005
#=GF DE Genome polyprotein
#=GF AC 1.10.8.970/FF/000005
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 44.696
#=GS 5o6vF00/1-75        AC Q01299
#=GS 5o6vF00/1-75        OS Tick-borne encephalitis virus (strain HYPR)
#=GS 5o6vF00/1-75        DE Genome polyprotein
#=GS 5o6vF00/1-75        DR CATH; 5o6v; F:2-72; 
#=GS 5o6vF00/1-75        DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS 5o6vF00/1-75        DR GO; GO:0039502; GO:0039563; 
#=GS 5o6vF00/1-75        DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS G4XII4/206-280      AC G4XII4
#=GS G4XII4/206-280      OS Tick-borne encephalitis virus
#=GS G4XII4/206-280      DE Genome polyprotein
#=GS G4XII4/206-280      DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS G4XII4/206-280      DR GO; GO:0019079; 
#=GS 5o6vE00/1-75        AC Q01299
#=GS 5o6vE00/1-75        OS Tick-borne encephalitis virus (strain HYPR)
#=GS 5o6vE00/1-75        DE Genome polyprotein
#=GS 5o6vE00/1-75        DR CATH; 5o6v; E:2-72; 
#=GS 5o6vE00/1-75        DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS 5o6vE00/1-75        DR GO; GO:0039502; GO:0039563; 
#=GS 5o6vE00/1-75        DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS 5o6vD00/1-75        AC Q01299
#=GS 5o6vD00/1-75        OS Tick-borne encephalitis virus (strain HYPR)
#=GS 5o6vD00/1-75        DE Genome polyprotein
#=GS 5o6vD00/1-75        DR CATH; 5o6v; D:2-72; 
#=GS 5o6vD00/1-75        DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS 5o6vD00/1-75        DR GO; GO:0039502; GO:0039563; 
#=GS 5o6vD00/1-75        DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS 5o6aF00/1-75        AC Q01299
#=GS 5o6aF00/1-75        OS Tick-borne encephalitis virus (strain HYPR)
#=GS 5o6aF00/1-75        DE Genome polyprotein
#=GS 5o6aF00/1-75        DR CATH; 5o6a; F:2-72; 
#=GS 5o6aF00/1-75        DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS 5o6aF00/1-75        DR GO; GO:0039502; GO:0039563; 
#=GS 5o6aF00/1-75        DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS 5o6aE00/1-75        AC Q01299
#=GS 5o6aE00/1-75        OS Tick-borne encephalitis virus (strain HYPR)
#=GS 5o6aE00/1-75        DE Genome polyprotein
#=GS 5o6aE00/1-75        DR CATH; 5o6a; E:2-72; 
#=GS 5o6aE00/1-75        DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS 5o6aE00/1-75        DR GO; GO:0039502; GO:0039563; 
#=GS 5o6aE00/1-75        DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS 5o6aD00/1-75        AC Q01299
#=GS 5o6aD00/1-75        OS Tick-borne encephalitis virus (strain HYPR)
#=GS 5o6aD00/1-75        DE Genome polyprotein
#=GS 5o6aD00/1-75        DR CATH; 5o6a; D:2-72; 
#=GS 5o6aD00/1-75        DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS 5o6aD00/1-75        DR GO; GO:0039502; GO:0039563; 
#=GS 5o6aD00/1-75        DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS P29837/206-280      AC P29837
#=GS P29837/206-280      OS Langat virus (strain TP21)
#=GS P29837/206-280      DE Genome polyprotein
#=GS P29837/206-280      DR ORG; Viruses; Flaviviridae; Flavivirus; Langat virus; 
#=GS P29837/206-280      DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS P22338/206-280      AC P22338
#=GS P22338/206-280      OS Louping ill virus
#=GS P22338/206-280      DE Genome polyprotein
#=GS P22338/206-280      DR ORG; Viruses; Flaviviridae; Flavivirus; Louping ill virus; 
#=GS P22338/206-280      DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS C3V005/209-283      AC C3V005
#=GS C3V005/209-283      OS Chimeric Tick-borne encephalitis virus/Dengue virus 4
#=GS C3V005/209-283      DE Genome polyprotein
#=GS C3V005/209-283      DR ORG; Viruses; Flaviviridae; Flavivirus; Chimeric Tick-borne encephalitis virus/Dengue virus 4; 
#=GS Q01299/206-280      AC Q01299
#=GS Q01299/206-280      OS Tick-borne encephalitis virus (strain HYPR)
#=GS Q01299/206-280      DE Genome polyprotein
#=GS Q01299/206-280      DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS Q01299/206-280      DR GO; GO:0039502; GO:0039563; 
#=GS Q01299/206-280      DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS P07720/206-280      AC P07720
#=GS P07720/206-280      OS Tick-borne encephalitis virus (STRAIN SOFJIN)
#=GS P07720/206-280      DE Genome polyprotein
#=GS P07720/206-280      DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS P07720/206-280      DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS P14336/206-280      AC P14336
#=GS P14336/206-280      OS Tick-borne encephalitis virus (WESTERN SUBTYPE)
#=GS P14336/206-280      DE Genome polyprotein
#=GS P14336/206-280      DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS P14336/206-280      DR EC; 2.1.1.56; 2.1.1.57; 2.7.7.48; 3.4.21.91; 3.6.1.15; 3.6.4.13; 
#=GS P29838/206-280      AC P29838
#=GS P29838/206-280      OS Langat virus (strain Yelantsev)
#=GS P29838/206-280      DE Genome polyprotein
#=GS P29838/206-280      DR ORG; Viruses; Flaviviridae; Flavivirus; Langat virus; 
#=GS A0A218KFE7/206-280  AC A0A218KFE7
#=GS A0A218KFE7/206-280  OS Tick-borne encephalitis virus
#=GS A0A218KFE7/206-280  DE Genome polyprotein
#=GS A0A218KFE7/206-280  DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS Q99354/206-280      AC Q99354
#=GS Q99354/206-280      OS Tick-borne encephalitis virus
#=GS Q99354/206-280      DE Structural protein gene, 5' end
#=GS Q99354/206-280      DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS Q88489/206-280      AC Q88489
#=GS Q88489/206-280      OS Tick-borne encephalitis virus
#=GS Q88489/206-280      DE Genome polyprotein
#=GS Q88489/206-280      DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS Q80E47/121-195      AC Q80E47
#=GS Q80E47/121-195      OS Tick-borne encephalitis virus
#=GS Q80E47/121-195      DE Polyprotein
#=GS Q80E47/121-195      DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS D1FNM3/206-280      AC D1FNM3
#=GS D1FNM3/206-280      OS Tick-borne encephalitis virus
#=GS D1FNM3/206-280      DE Polyprotein
#=GS D1FNM3/206-280      DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GS B5ATG5/206-280      AC B5ATG5
#=GS B5ATG5/206-280      OS Tick-borne encephalitis virus
#=GS B5ATG5/206-280      DE Polyprotein
#=GS B5ATG5/206-280      DR ORG; Viruses; Flaviviridae; Flavivirus; Tick-borne encephalitis virus; 
#=GF SQ 20
5o6vF00/1-75                SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNRLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA
G4XII4/206-280              SVLIPSHAQGDLTGRGHKWLEGDSLRTHLTRVEGWVWKNKMLTLAAIAVVWLAVESVVTRVAVVVVLLCLAPVYA
5o6vE00/1-75                SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNRLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA
5o6vD00/1-75                SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNRLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA
5o6aF00/1-75                SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNRLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA
5o6aE00/1-75                SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNRLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA
5o6aD00/1-75                SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNRLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA
P29837/206-280              SVLIPSHAQRDLTGRGHQWLEGEAVKAHLTRVEGWVWKNKLFTLSLVMVAWLMVDGLLPRILIVVVALALVPAYA
P22338/206-280              SVLIPTHAQGELTGRGRKWLEGDSLRTHLTRVEGWVWKNKLLALAMVAVVWLALESVVTRVAVLVVLLCLAPVYA
C3V005/209-283              SVLIPSHAQGDLTGRGHKWLEGDSLRTHLTRVEGWVWKNKVLTLAVIAVVWLTVESVVTRVAVVVVLLCLAPVYA
Q01299/206-280              SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNRLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA
P07720/206-280              SVLIPSHAQGDLTGRGHKWLEGDSLRTHLTRVEGWVWKNKVLTLAVIAVVWLTVESVVTRVAVVVVLLCLAPVYA
P14336/206-280              SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNKLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA
P29838/206-280              SVLIPSHAQRDLTGRGHQWLEGEAVKAHLTRVEGWVWKNKLFTLSLVMVAWLMVDGLLPRILIVVVALALVPAYA
A0A218KFE7/206-280          SVLIPSHAQGDLTGRGHKWLEGDSLRTHLTRVEGWVWKNKILTLAVIAVVWLTVESVVTRVAVVVVLLCLAPVYA
Q99354/206-280              SVLIPSHAQGDLTGRGHKWLEGDSLRTHLTRVEGWVWKNKVLTLAVIAVVWLTVESVVTRVAVVVVLLCLAPVYA
Q88489/206-280              SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNKLLALAMVTVVWLTLESVVARVAVLVVLLCLAPVYA
Q80E47/121-195              SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNRLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA
D1FNM3/206-280              SVLIPSHAQGELTGRGRKWLEGDALRTHLTRVEGWVWKNKLLALAVVAIVWLTVESVVTRVAVVVVLLCLAPVYA
B5ATG5/206-280              SVLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNRLLALAMVTVVWLTLESVVTRVAVLVVLLCLAPVYA
#=GC scorecons              999998999679999986999976676999999999999776696574869956766669767699696969699
#=GC scorecons_70           *********_***********************************_*_****_********_****_*_******
#=GC scorecons_80           *********__******_*****__*_*************___*__*_*_**__*____**_*_**_*_*_*_**
#=GC scorecons_90           *********__*****__****_____************____*____*_**_______*____**_*_*_*_**
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