# STOCKHOLM 1.0
#=GF ID 1.10.8.60/FF/000178
#=GF DE CDC48/VCP homolog, AAA superfamily
#=GF AC 1.10.8.60/FF/000178
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 94.876
#=GS Q21222/628-687              AC Q21222
#=GS Q21222/628-687              OS Caenorhabditis elegans
#=GS Q21222/628-687              DE ATPase family protein 2 homolog
#=GS Q21222/628-687              DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q21222/628-687              DR GO; GO:0004860; GO:0005737; GO:0006469; GO:0016887; GO:0019901; 
#=GS Q21222/628-687              DR EC; 3.6.4.10; 
#=GS Q7NP16/490-566              AC Q7NP16
#=GS Q7NP16/490-566              OS Gloeobacter violaceus PCC 7421
#=GS Q7NP16/490-566              DE Gll0242 protein
#=GS Q7NP16/490-566              DR ORG; Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacteraceae; Gloeobacter; Gloeobacter violaceus; 
#=GS A0A2K3CNX2/271-330_383-401  AC A0A2K3CNX2
#=GS A0A2K3CNX2/271-330_383-401  OS Chlamydomonas reinhardtii
#=GS A0A2K3CNX2/271-330_383-401  DE Uncharacterized protein
#=GS A0A2K3CNX2/271-330_383-401  DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS A8IQI4/272-331_384-402      AC A8IQI4
#=GS A8IQI4/272-331_384-402      OS Chlamydomonas reinhardtii
#=GS A8IQI4/272-331_384-402      DE Cdc48-like protein
#=GS A8IQI4/272-331_384-402      DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS B3SBV1/640-710              AC B3SBV1
#=GS B3SBV1/640-710              OS Trichoplax adhaerens
#=GS B3SBV1/640-710              DE Uncharacterized protein
#=GS B3SBV1/640-710              DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; 
#=GS A7USD2/522-592              AC A7USD2
#=GS A7USD2/522-592              OS Anopheles gambiae
#=GS A7USD2/522-592              DE AGAP009548-PA
#=GS A7USD2/522-592              DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles gambiae; 
#=GS Q5JE98/685-770              AC Q5JE98
#=GS Q5JE98/685-770              OS Thermococcus kodakarensis KOD1
#=GS Q5JE98/685-770              DE CDC48/VCP homolog, AAA superfamily
#=GS Q5JE98/685-770              DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; 
#=GS A9V680/784-855              AC A9V680
#=GS A9V680/784-855              OS Monosiga brevicollis
#=GS A9V680/784-855              DE Predicted protein
#=GS A9V680/784-855              DR ORG; Eukaryota; Choanoflagellida; Salpingoecidae; Monosiga; Monosiga brevicollis; 
#=GS Q0V1G7/563-637              AC Q0V1G7
#=GS Q0V1G7/563-637              OS Parastagonospora nodorum SN15
#=GS Q0V1G7/563-637              DE Uncharacterized protein
#=GS Q0V1G7/563-637              DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Parastagonospora; Parastagonospora nodorum; 
#=GS F6YHD5/129-199              AC F6YHD5
#=GS F6YHD5/129-199              OS Ciona intestinalis
#=GS F6YHD5/129-199              DE Uncharacterized protein
#=GS F6YHD5/129-199              DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS H3FZM9/111-182              AC H3FZM9
#=GS H3FZM9/111-182              OS Pristionchus pacificus
#=GS H3FZM9/111-182              DE Uncharacterized protein
#=GS H3FZM9/111-182              DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS C5A7H9/685-770              AC C5A7H9
#=GS C5A7H9/685-770              OS Thermococcus gammatolerans EJ3
#=GS C5A7H9/685-770              DE AAA family ATPase, CDC48 subfamily (Cdc48)
#=GS C5A7H9/685-770              DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus gammatolerans; 
#=GS A9UPI5/105-175              AC A9UPI5
#=GS A9UPI5/105-175              OS Monosiga brevicollis
#=GS A9UPI5/105-175              DE Uncharacterized protein
#=GS A9UPI5/105-175              DR ORG; Eukaryota; Choanoflagellida; Salpingoecidae; Monosiga; Monosiga brevicollis; 
#=GF SQ 13
Q21222/628-687                      PCEVTRRAILEMRTKKMKFDDTVRTIDKLVEKTSGYSGAELVAVCRTAAMFAMRESIDAT---------------------------------
Q7NP16/490-566                      PDRESRLAILRVHNRERPLA-GV-DLEFWAGSTEGWSGADLALFSNQAALAAVRRHREAGHTDPA--------RIVLGPDDFEAAYR------
A0A2K3CNX2/271-330_383-401          -DAAQRADILRLHTRGLQLAADV-DLAAVAAACHGYSGADLAAATREAAMAALAEVAAAALG------------LVVRAAHLATAMKKVRPSI
A8IQI4/272-331_384-402              -DAAQRADILRLHTRGLQLAADV-DLAAVAAACHGYSGADLAAATREAAMAALAEVAAAALG------------LVVRAAHLATAMKKVRPSI
B3SBV1/640-710                      PDSETRHEILKIQFRRIPVNDDV-DIEYLTLKTEGFSGAEVALLCQEAAFAALQENIECE---------------RVCRQHFINALN------
A7USD2/522-592                      PDAAAREEIFRIKLKTIPTASTV-DLAELVRRTAGCSGSEIEAICQEAALKGLESSFDVE---------------TIEWEHFEHALG------
Q5JE98/685-770                      PDEKARLEIFKVHTRRVPLAGDV-DLRELAKKTEGYTGADIAAVVREAAMLAMRRALQEGIIRPGMKADEIRGKVKVTMKDFEEALK------
A9V680/784-855                      PDEAARQHILARQLQSVPHA-DI-DVAALVDATAGLSGAEVAALIRSASMRALVRSADKSAA-------------VVSQADVEAALS------
Q0V1G7/563-637                      PTEEARIQILQIHTRKRPLAPDV-DLGVVAARTEGSSGADISGLCAVAVELAISGYEKAPECEP-----------LIRMCHFEQALD------
F6YHD5/129-199                      PDAETRREIFRIQFRKMPIADDI-SMEALVAKTERYSGAEICSVCREAALEALDENLECS---------------HVTWQHFISALE------
H3FZM9/111-182                      PTPKTREALLHLRSTKIPFDDTV-DLSSIVSRTDLYSGAELVAVCQTAALAAMRDDTVHNH--------------KVHPRHFDIALS------
C5A7H9/685-770                      PDEKARLEIFKVHTRKVPLAEDV-NLEELAKRTEGYTGADIEAVVREAAMLAMRRALQEGIIRPGMKADEIRRKVKVTMRDFEEALK------
A9UPI5/105-175                      -NHEARLTILQRLLRATPTDADL-QLAALAERLQGFVGADVAALVREASLHAARRGRQ-----------------TVGHADFIAALGVV---V
#=GC scorecons                      553449348644546446452570564355346465698754544549653854433323100000000000000252224532753000000
#=GC scorecons_70                   _____*__**____*__*____*__*________*_****_______**__*________________________________*________
#=GC scorecons_80                   _____*__*_____________*______________**________*___*________________________________*________
#=GC scorecons_90                   _____*__*____________________________**________*___*_________________________________________
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