# STOCKHOLM 1.0
#=GF ID 1.10.8.60/FF/000165
#=GF DE Sigma-54-dependent transcriptional response regulator PilR
#=GF AC 1.10.8.60/FF/000165
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 72.141
#=GS Q74D24/314-390      AC Q74D24
#=GS Q74D24/314-390      OS Geobacter sulfurreducens PCA
#=GS Q74D24/314-390      DE Sigma-54-dependent transcriptional response regulator PilR
#=GS Q74D24/314-390      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; Geobacter sulfurreducens; 
#=GS Q74D24/314-390      DR GO; GO:0045893; 
#=GS Q1DDD5/323-396      AC Q1DDD5
#=GS Q1DDD5/323-396      OS Myxococcus xanthus DK 1622
#=GS Q1DDD5/323-396      DE Sigma-54 dependent DNA-binding response regulator Nla19
#=GS Q1DDD5/323-396      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus; Myxococcus xanthus; 
#=GS Q1DDD5/323-396      DR GO; GO:0010468; 
#=GS Q00934/307-380      AC Q00934
#=GS Q00934/307-380      OS Pseudomonas aeruginosa PAO1
#=GS Q00934/307-380      DE Type 4 fimbriae expression regulatory protein PilR
#=GS Q00934/307-380      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS Q00934/307-380      DR GO; GO:0060491; 
#=GS A0A157Z0A8/307-380  AC A0A157Z0A8
#=GS A0A157Z0A8/307-380  OS Enterobacter cloacae
#=GS A0A157Z0A8/307-380  DE Two component Fis family sigma54-specific transcriptional regulator
#=GS A0A157Z0A8/307-380  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter cloacae; 
#=GS A0A1G5JNT8/307-380  AC A0A1G5JNT8
#=GS A0A1G5JNT8/307-380  OS Acinetobacter baumannii
#=GS A0A1G5JNT8/307-380  DE Type 4 fimbriae expression regulatory protein pilR
#=GS A0A1G5JNT8/307-380  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter baumannii; 
#=GS A0A1F0J5W6/307-380  AC A0A1F0J5W6
#=GS A0A1F0J5W6/307-380  OS Pseudomonas sp. HMSC065H01
#=GS A0A1F0J5W6/307-380  DE Sigma-54-dependent Fis family transcriptional regulator
#=GS A0A1F0J5W6/307-380  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC065H01; 
#=GS A0A1S1C3A8/307-380  AC A0A1S1C3A8
#=GS A0A1S1C3A8/307-380  OS Pseudomonas sp. HMSC059F05
#=GS A0A1S1C3A8/307-380  DE Sigma-54-dependent Fis family transcriptional regulator
#=GS A0A1S1C3A8/307-380  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC059F05; 
#=GS A0A2V2TQC7/307-380  AC A0A2V2TQC7
#=GS A0A2V2TQC7/307-380  OS Pseudomonas sp. RW410
#=GS A0A2V2TQC7/307-380  DE Type 4 fimbriae expression regulatory protein PilR
#=GS A0A2V2TQC7/307-380  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. RW410; 
#=GS A0A3S4NA93/307-380  AC A0A3S4NA93
#=GS A0A3S4NA93/307-380  OS Pseudomonas fluorescens
#=GS A0A3S4NA93/307-380  DE Two-component response regulator
#=GS A0A3S4NA93/307-380  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group; Pseudomonas fluorescens; 
#=GS L7U7M2/323-398      AC L7U7M2
#=GS L7U7M2/323-398      OS Myxococcus stipitatus DSM 14675
#=GS L7U7M2/323-398      DE Sigma-54 dependent DNA-binding response regulator
#=GS L7U7M2/323-398      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus; Myxococcus stipitatus; 
#=GS Q6VMS3/323-396      AC Q6VMS3
#=GS Q6VMS3/323-396      OS Myxococcus xanthus
#=GS Q6VMS3/323-396      DE Mutant NtrC-like activator
#=GS Q6VMS3/323-396      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus; Myxococcus xanthus; 
#=GS A0A072ZC19/307-380  AC A0A072ZC19
#=GS A0A072ZC19/307-380  OS Pseudomonas aeruginosa
#=GS A0A072ZC19/307-380  DE Transcriptional regulatory protein ZraR
#=GS A0A072ZC19/307-380  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A0H2ZG94/307-380  AC A0A0H2ZG94
#=GS A0A0H2ZG94/307-380  OS Pseudomonas aeruginosa UCBPP-PA14
#=GS A0A0H2ZG94/307-380  DE Two-component response regulator PilR
#=GS A0A0H2ZG94/307-380  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS W1MQN4/307-380      AC W1MQN4
#=GS W1MQN4/307-380      OS Pseudomonas aeruginosa VRFPA03
#=GS W1MQN4/307-380      DE Chemotaxis protein CheY
#=GS W1MQN4/307-380      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS V6AM29/307-380      AC V6AM29
#=GS V6AM29/307-380      OS Pseudomonas aeruginosa MH27
#=GS V6AM29/307-380      DE Type 4 fimbriae expression regulatory protein pilR
#=GS V6AM29/307-380      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GF SQ 15
Q74D24/314-390              LRERGDDIPILVEHFYKKYVQPPYSD-RIITQGALKLLMSYGFPGNVRELENLVERCSVLGNREISEECLPPQLHAGK---
Q1DDD5/323-396              -RERLEDVPALAEHFLERANARSPNP-KRLSAAAVSHLMSYGFPGNVRELENLVEQAAALAE---GDELLPEDFPVRQG--
Q00934/307-380              -RERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCE---DDQIQPHDLRLAD---
A0A157Z0A8/307-380          -RERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCE---DDQIQPHDLRLAD---
A0A1G5JNT8/307-380          -RERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCE---DDQIQPHDLRLAD---
A0A1F0J5W6/307-380          -RERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCE---DDQIQPHDLRLAD---
A0A1S1C3A8/307-380          -RERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCE---DDQIQPHDLRLAD---
A0A2V2TQC7/307-380          -RERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCE---DDQIQPHDLRLAD---
A0A3S4NA93/307-380          -RERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCE---DDQIQPHDLRLAD---
L7U7M2/323-398              -RERLEDVPALAEHFLERANARSPNP-RRLSAAAVTHLMGYDFPGNVRELENLVEQAAALAE---ADELLPEDFPLRQARL
Q6VMS3/323-396              -RERLEDVPALAEHFLERANARSPNP-KRLSAAAVSHLMSYGFPGNVRELENLVEQAAALAE---GDELLPEDFPVRQG--
A0A072ZC19/307-380          -RERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCE---DDQIQPHDLRLAD---
A0A0H2ZG94/307-380          -RERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCE---DDQIQPHDLRLAD---
W1MQN4/307-380              -RERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCE---DDQIQPHDLRLAD---
V6AM29/307-380              -RERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCE---DDQIQPHDLRLAD---
#=GC scorecons              099937979497965667444454461467644944495595999999999966966459470004764594764545000
#=GC scorecons_70           _***_****_****_*_*_______*__**___*___*__*_***************__*_*____**__*_**_______
#=GC scorecons_80           _***_**_*_***____*___________*___*___*__*_**********__*____*_*____*___*__________
#=GC scorecons_90           _***__*_*_*_*____________________*___*__*_**********__*____*__________*__________
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