# STOCKHOLM 1.0 #=GF ID 1.10.8.60/FF/000120 #=GF DE Sigma-54-dependent Fis family transcriptional regulator #=GF AC 1.10.8.60/FF/000120 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 95.158 #=GS 5ep4A02/175-256 AC Q1ZS18 #=GS 5ep4A02/175-256 OS Photobacterium angustum S14 #=GS 5ep4A02/175-256 DE Putative repressor protein luxO #=GS 5ep4A02/175-256 DR CATH; 5ep4; A:314-393; #=GS 5ep4A02/175-256 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium angustum; #=GS 5ep4A02/175-256 DR GO; GO:0042802; #=GS Q5DYQ0/314-393 AC Q5DYQ0 #=GS Q5DYQ0/314-393 OS Aliivibrio fischeri ES114 #=GS Q5DYQ0/314-393 DE Sigma-54 dependent transcriptional regulator #=GS Q5DYQ0/314-393 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio; Aliivibrio fischeri; #=GS Q5DYQ0/314-393 DR GO; GO:0000976; GO:0001216; GO:0032993; GO:0045893; #=GS Q9KT84/304-382 AC Q9KT84 #=GS Q9KT84/304-382 OS Vibrio cholerae O1 biovar El Tor str. N16961 #=GS Q9KT84/304-382 DE Regulatory protein LuxO #=GS Q9KT84/304-382 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS Q9KT84/304-382 DR GO; GO:0000156; GO:0000160; GO:0003700; GO:0006355; #=GS Q5E6B4/316-394 AC Q5E6B4 #=GS Q5E6B4/316-394 OS Aliivibrio fischeri ES114 #=GS Q5E6B4/316-394 DE Autoinducer repressor protein LuxO #=GS Q5E6B4/316-394 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio; Aliivibrio fischeri; #=GS Q5E6B4/316-394 DR GO; GO:0008218; #=GS Q9HV73/320-397 AC Q9HV73 #=GS Q9HV73/320-397 OS Pseudomonas aeruginosa PAO1 #=GS Q9HV73/320-397 DE Two-component response regulator CbrB #=GS Q9HV73/320-397 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; #=GS Q9HV73/320-397 DR GO; GO:0000976; GO:0001216; GO:0032993; GO:0090368; GO:1900081; GO:2000147; GO:2001158; #=GS P23747/319-395 AC P23747 #=GS P23747/319-395 OS Pseudomonas aeruginosa PAO1 #=GS P23747/319-395 DE Alginate biosynthesis transcriptional regulatory protein AlgB #=GS P23747/319-395 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; #=GS P23747/319-395 DR GO; GO:0042121; GO:0044212; GO:0045862; GO:0045893; GO:1900232; GO:1900378; GO:2000147; #=GS G3XCK7/320-397 AC G3XCK7 #=GS G3XCK7/320-397 OS Pseudomonas aeruginosa #=GS G3XCK7/320-397 DE CbrB #=GS G3XCK7/320-397 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; #=GS G3XCK7/320-397 DR GO; GO:0090368; GO:1900081; GO:2000147; GO:2001158; #=GS Q2GHC4/322-400 AC Q2GHC4 #=GS Q2GHC4/322-400 OS Ehrlichia chaffeensis str. Arkansas #=GS Q2GHC4/322-400 DE Putative nitrogen regulation protein NtrX #=GS Q2GHC4/322-400 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia; canis group; Ehrlichia chaffeensis; #=GS Q2GHC4/322-400 DR GO; GO:0003700; GO:0006355; #=GS Q5LRN8/285-362 AC Q5LRN8 #=GS Q5LRN8/285-362 OS Ruegeria pomeroyi DSS-3 #=GS Q5LRN8/285-362 DE Nitrogen regulation protein NtrC #=GS Q5LRN8/285-362 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria; Ruegeria pomeroyi; #=GS Q5LRN8/285-362 DR GO; GO:0009399; #=GS A7MVC2/305-382 AC A7MVC2 #=GS A7MVC2/305-382 OS Vibrio campbellii ATCC BAA-1116 #=GS A7MVC2/305-382 DE Luminescence regulatory protein LuxO #=GS A7MVC2/305-382 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio campbellii; #=GS A7MVC2/305-382 DR GO; GO:0045893; #=GS 5ep3A02/175-256 AC Q1ZS18 #=GS 5ep3A02/175-256 OS Photobacterium angustum S14 #=GS 5ep3A02/175-256 DE Putative repressor protein luxO #=GS 5ep3A02/175-256 DR CATH; 5ep3; A:314-393; #=GS 5ep3A02/175-256 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium angustum; #=GS 5ep3A02/175-256 DR GO; GO:0042802; #=GS 5ep2A02/175-256 AC Q1ZS18 #=GS 5ep2A02/175-256 OS Photobacterium angustum S14 #=GS 5ep2A02/175-256 DE Putative repressor protein luxO #=GS 5ep2A02/175-256 DR CATH; 5ep2; A:314-392; #=GS 5ep2A02/175-256 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium angustum; #=GS 5ep2A02/175-256 DR GO; GO:0042802; #=GS 5ep1A02/175-253 AC Q1ZS18 #=GS 5ep1A02/175-253 OS Photobacterium angustum S14 #=GS 5ep1A02/175-253 DE Putative repressor protein luxO #=GS 5ep1A02/175-253 DR CATH; 5ep1; A:314-392; #=GS 5ep1A02/175-253 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium angustum; #=GS 5ep1A02/175-253 DR GO; GO:0042802; #=GS Q603F8/309-383 AC Q603F8 #=GS Q603F8/309-383 OS Methylococcus capsulatus str. Bath #=GS Q603F8/309-383 DE Putative nitrogen regulation protein NtrX #=GS Q603F8/309-383 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus; Methylococcus capsulatus; #=GS Q603F8/309-383 DR GO; GO:0009399; #=GS A0A335EK18/319-395 AC A0A335EK18 #=GS A0A335EK18/319-395 OS Acinetobacter baumannii #=GS A0A335EK18/319-395 DE Type 4 fimbriae expression regulatory protein #=GS A0A335EK18/319-395 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter baumannii; #=GS A0A024HNM3/321-396 AC A0A024HNM3 #=GS A0A024HNM3/321-396 OS Pseudomonas knackmussii B13 #=GS A0A024HNM3/321-396 DE Transcriptional regulatory protein ZraR #=GS A0A024HNM3/321-396 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas knackmussii; #=GS A0A1S1C2C4/319-395 AC A0A1S1C2C4 #=GS A0A1S1C2C4/319-395 OS Pseudomonas sp. HMSC059F05 #=GS A0A1S1C2C4/319-395 DE Sigma-54-dependent Fis family transcriptional regulator #=GS A0A1S1C2C4/319-395 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC059F05; #=GS A0A2V2TVU6/319-395 AC A0A2V2TVU6 #=GS A0A2V2TVU6/319-395 OS Pseudomonas sp. RW410 #=GS A0A2V2TVU6/319-395 DE Sigma-54-dependent Fis family transcriptional regulator #=GS A0A2V2TVU6/319-395 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. RW410; #=GS A0A1F0IU98/319-395 AC A0A1F0IU98 #=GS A0A1F0IU98/319-395 OS Pseudomonas sp. HMSC065H01 #=GS A0A1F0IU98/319-395 DE Sigma-54-dependent Fis family transcriptional regulator #=GS A0A1F0IU98/319-395 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC065H01; #=GS A0A448BVB5/319-395 AC A0A448BVB5 #=GS A0A448BVB5/319-395 OS Pseudomonas fluorescens #=GS A0A448BVB5/319-395 DE Two-component response regulator #=GS A0A448BVB5/319-395 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group; Pseudomonas fluorescens; #=GS A0A366A3J4/304-382 AC A0A366A3J4 #=GS A0A366A3J4/304-382 OS Vibrio sp. 2017V-1124 #=GS A0A366A3J4/304-382 DE Sigma-54-dependent Fis family transcriptional regulator #=GS A0A366A3J4/304-382 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. 2017V-1124; #=GS A0A366ACJ2/304-382 AC A0A366ACJ2 #=GS A0A366ACJ2/304-382 OS Vibrio sp. 2017V-1105 #=GS A0A366ACJ2/304-382 DE Sigma-54-dependent Fis family transcriptional regulator #=GS A0A366ACJ2/304-382 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. 2017V-1105; #=GS P0C5S5/305-382 AC P0C5S5 #=GS P0C5S5/305-382 OS Vibrio harveyi #=GS P0C5S5/305-382 DE Luminescence regulatory protein LuxO #=GS P0C5S5/305-382 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio harveyi; #=GS P0C5S5/305-382 DR GO; GO:0008218; #=GS Q3YRF5/328-406 AC Q3YRF5 #=GS Q3YRF5/328-406 OS Ehrlichia canis str. Jake #=GS Q3YRF5/328-406 DE Nitrogen assimilation regulatory protein ntrX #=GS Q3YRF5/328-406 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia; canis group; Ehrlichia canis; #=GS Q1ZS18/314-391 AC Q1ZS18 #=GS Q1ZS18/314-391 OS Photobacterium angustum S14 #=GS Q1ZS18/314-391 DE Putative repressor protein luxO #=GS Q1ZS18/314-391 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium angustum; #=GS Q1ZS18/314-391 DR GO; GO:0042802; #=GS A0A0C7ASK6/319-395 AC A0A0C7ASK6 #=GS A0A0C7ASK6/319-395 OS Pseudomonas aeruginosa #=GS A0A0C7ASK6/319-395 DE Alginate biosynthesis transcriptional regulatory protein AlgB #=GS A0A0C7ASK6/319-395 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; #=GS A0A0E4CK15/304-382 AC A0A0E4CK15 #=GS A0A0E4CK15/304-382 OS Vibrio cholerae #=GS A0A0E4CK15/304-382 DE ATPase AAA #=GS A0A0E4CK15/304-382 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS C3LTR8/304-382 AC C3LTR8 #=GS C3LTR8/304-382 OS Vibrio cholerae M66-2 #=GS C3LTR8/304-382 DE LuxO repressor protein #=GS C3LTR8/304-382 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GS A0A0H3AGS8/304-382 AC A0A0H3AGS8 #=GS A0A0H3AGS8/304-382 OS Vibrio cholerae O395 #=GS A0A0H3AGS8/304-382 DE LuxO repressor protein #=GS A0A0H3AGS8/304-382 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; #=GF SQ 29 5ep4A02/175-256 -RERGGDIIEIAHALLGLMSLEEGKSFSRFSEPVLRLFESYSWPGNVRELQNVIRNIVVLNTDDEV-KLEMVPPPILEHHHHHH Q5DYQ0/314-393 -RERGTDIIDIATFFLKKYAKEDHKKFKALKRNVELRLCNYSWPGNVRQLQNIIRNVVVLHNDTHV-AIEHLPPPLNQPVT--N Q9KT84/304-382 -RARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREI-TLDMLPPPLNQMSA--- Q5E6B4/316-394 -RDRGNDIIEIGHSILGHFSHEEGREFITFSPEVVDRFLNYDWPGNVRQLQNVIRNVVVLNKGKEV-ELSMLPPPLSLDSK--- Q9HV73/320-397 LRERGNDVMEIARAFLARQCTRMGRAPLSFAHDAEQAIRHYPWPGNVRELENAIERAVILSESQEI-HADLLGIDIELD----- P23747/319-395 -RERAEDILGLAERFLARFVKDYGRPARGFSEAAREAMRQYPWPGNVRELRNVIERASIICNQELV-DVDHLGFSAAQS----- G3XCK7/320-397 LRERGNDVMEIARAFLARQCTRMGRAPLSFAHDAEQAIRHYPWPGNVRELENAIERAVILSESQEI-HADLLGIDIELD----- Q2GHC4/322-400 --EYCTDIPELCRYFMSSICKKIGLCTHILSDEALIAMQSYEWPGNLRQLRNVIEWILIMKSPKEIITAKDLPVDIVSNSP--- Q5LRN8/285-362 LRERVDDIPLLTEYFLAK-AERDGAPKRWLGAGAAELFRIYSWPGNVRQLENAVRRLSLISRAEEI-SRTEVEQVLGNQP---- A7MVC2/305-382 -RERGKDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEI-TLDMLPPPLNQPV---- 5ep3A02/175-256 -RERGGDIIEIAHALLGLMSLEEGKSFSRFSEPVLRLFESYSWPGNVRELQNVIRNIVVLNTDDEV-KLEMVPPPILEHHHHHH 5ep2A02/175-256 -RERGGDIIEIAHALLGLMSLEEGKSFSRFSEPVLRLFESYSWPGNVRELQNVIRNIVVLNTDDEV-KLEMVPPPILEHHHHHH 5ep1A02/175-253 -RERGGDIIEIAHALLGLMSLEEGKSFSRFSEPVLRLFESYSWPGNVRELQNVIRNIVVLNTDDEV-KLEMVPPPILEHHH--- Q603F8/309-383 LREHSEDVPELLRFYVDYFVSREKLPFRRFPVSVQNFLRHYAWHGNVRELKNLVQRLLILGSGEEV-SLEEVKSIL-------- A0A335EK18/319-395 -RERAEDILGLAERFLARFVKDYGRPARGFSEAAREAMRQYPWPGNVRELRNVIERASIICNQELV-DVDHLGFSAAQS----- A0A024HNM3/321-396 LRERGADVMEIARAFLARQCSQMGRAPLSFSHEAEQAIRHYPWPGNVRELENAIERAVILSEGQEI-PADLLGIDIE------- A0A1S1C2C4/319-395 -RERAEDILGLAERFLARFVKDYGRPARGFSEAAREAMRQYPWPGNVRELRNVIERASIICNQELV-DVDHLGFSAAQS----- A0A2V2TVU6/319-395 -RERAEDILGLAERFLARFVKDYGRPARGFSEAAREAMRQYPWPGNVRELRNVIERASIICNQELV-DVDHLGFSAAQS----- A0A1F0IU98/319-395 -RERAEDILGLAERFLARFVKDYGRPARGFSEAAREAMRQYPWPGNVRELRNVIERASIICNQELV-DVDHLGFSAAQS----- A0A448BVB5/319-395 -RERAEDILGLAERFLARFVKDYGRPARGFSEAAREAMRQYPWPGNVRELRNVIERASIICNQELV-DVDHLGFSAAQS----- A0A366A3J4/304-382 -RARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREI-TLDMLPPPLNQMSA--- A0A366ACJ2/304-382 -RARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREI-TLDMLPPPLNQMSA--- P0C5S5/305-382 -RERGKDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEI-TLDMLPPPLNQPV---- Q3YRF5/328-406 --EYCTDIPELCRYFMNSICKKMGLCTHILSDEALIAMQSYEWPGNLRQLRNVIEWILIMKSPKEVITAKDLPVDIVSNSP--- Q1ZS18/314-391 -RERGGDIIEIAHALLGLMSLEEGKSFSRFSEPVLRLFESYSWPGNVRELQNVIRNIVVLNTDDEV-KLEMVPPPINSIN---- A0A0C7ASK6/319-395 -RERAEDILGLAERFLARFVKDYGRPARGFSEAAREAMRQYPWPGNVRELRNVIERASIICNQELV-DVDHLGFSAAQS----- A0A0E4CK15/304-382 -RARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREI-TLDMLPPPLNQMSA--- C3LTR8/304-382 -RARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREI-TLDMLPPPLNQMSA--- A0A0H3AGS8/304-382 -RARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREI-TLDMLPPPLNQMSA--- #=GC scorecons 076754975666436753444537534346644634455494989989695966555566444457035647544534210000 #=GC scorecons_70 _***__**__**___*_______*_____**_________*_********_***____**_____*_____*____________ #=GC scorecons_80 _*_*__**_______*_______*________________*_******_*_*________________________________ #=GC scorecons_90 ______*_________________________________*_******_*_*________________________________ //