# STOCKHOLM 1.0
#=GF ID 1.10.8.60/FF/000114
#=GF DE Transcriptional regulator RtcR
#=GF AC 1.10.8.60/FF/000114
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 43.687
#=GS P38035/362-443      AC P38035
#=GS P38035/362-443      OS Escherichia coli K-12
#=GS P38035/362-443      DE Transcriptional regulatory protein RtcR
#=GS P38035/362-443      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS P38035/362-443      DR GO; GO:0003700; GO:0045893; 
#=GS Q5LWU7/354-435      AC Q5LWU7
#=GS Q5LWU7/354-435      OS Ruegeria pomeroyi DSS-3
#=GS Q5LWU7/354-435      DE Transcriptional regulator RtcR
#=GS Q5LWU7/354-435      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria; Ruegeria pomeroyi; 
#=GS Q5LWU7/354-435      DR GO; GO:0003700; GO:0006355; 
#=GS A0A384L8M9/362-443  AC A0A384L8M9
#=GS A0A384L8M9/362-443  OS Shigella flexneri
#=GS A0A384L8M9/362-443  DE Putative 2-component regulator
#=GS A0A384L8M9/362-443  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS A0A3V4X3R5/362-443  AC A0A3V4X3R5
#=GS A0A3V4X3R5/362-443  OS Salmonella enterica subsp. enterica
#=GS A0A3V4X3R5/362-443  DE Sigma 54-dependent transcriptional regulator
#=GS A0A3V4X3R5/362-443  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; 
#=GS A0A200LAF2/362-443  AC A0A200LAF2
#=GS A0A200LAF2/362-443  OS Shigella sonnei
#=GS A0A200LAF2/362-443  DE Transcriptional regulator
#=GS A0A200LAF2/362-443  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella sonnei; 
#=GS A0A069XLX1/362-443  AC A0A069XLX1
#=GS A0A069XLX1/362-443  OS Escherichia coli 3-373-03_S4_C2
#=GS A0A069XLX1/362-443  DE Sigma-54 interaction domain protein
#=GS A0A069XLX1/362-443  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A140N780/362-443  AC A0A140N780
#=GS A0A140N780/362-443  OS Escherichia coli BL21(DE3)
#=GS A0A140N780/362-443  DE Sigma 54 interacting domain protein
#=GS A0A140N780/362-443  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A2X6Z754/362-443  AC A0A2X6Z754
#=GS A0A2X6Z754/362-443  OS Escherichia coli
#=GS A0A2X6Z754/362-443  DE Transcriptional regulator
#=GS A0A2X6Z754/362-443  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS D2A9M4/362-443      AC D2A9M4
#=GS D2A9M4/362-443      OS Shigella flexneri 2002017
#=GS D2A9M4/362-443      DE Putative 2-component regulator
#=GS D2A9M4/362-443      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS A0A0H2W0M5/362-443  AC A0A0H2W0M5
#=GS A0A0H2W0M5/362-443  OS Shigella flexneri
#=GS A0A0H2W0M5/362-443  DE Putative 2-component regulator
#=GS A0A0H2W0M5/362-443  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS I6FDR3/362-443      AC I6FDR3
#=GS I6FDR3/362-443      OS Shigella flexneri 1235-66
#=GS I6FDR3/362-443      DE Sigma-54 interaction domain protein
#=GS I6FDR3/362-443      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS A0A2Y3BKX3/362-443  AC A0A2Y3BKX3
#=GS A0A2Y3BKX3/362-443  OS Shigella flexneri 2a
#=GS A0A2Y3BKX3/362-443  DE Sigma-54 dependent transcriptional regulator RtcR
#=GS A0A2Y3BKX3/362-443  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS A0A127GQM2/362-443  AC A0A127GQM2
#=GS A0A127GQM2/362-443  OS Shigella flexneri 4c
#=GS A0A127GQM2/362-443  DE Transcriptional regulator
#=GS A0A127GQM2/362-443  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; 
#=GS A0A454A8T5/362-444  AC A0A454A8T5
#=GS A0A454A8T5/362-444  OS Escherichia coli 536
#=GS A0A454A8T5/362-444  DE Transcriptional regulatory protein RtcR
#=GS A0A454A8T5/362-444  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A192EUI7/362-444  AC A0A192EUI7
#=GS A0A192EUI7/362-444  OS Escherichia coli
#=GS A0A192EUI7/362-444  DE Transcriptional regulator
#=GS A0A192EUI7/362-444  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0H3JIS1/362-443  AC A0A0H3JIS1
#=GS A0A0H3JIS1/362-443  OS Escherichia coli O157:H7
#=GS A0A0H3JIS1/362-443  DE Transcriptional regulatory protein RtcR
#=GS A0A0H3JIS1/362-443  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A1Z3UZD1/362-443  AC A0A1Z3UZD1
#=GS A0A1Z3UZD1/362-443  OS Escherichia coli O157
#=GS A0A1Z3UZD1/362-443  DE Sigma 54-dependent transcriptional regulator
#=GS A0A1Z3UZD1/362-443  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS D3QTP1/362-443      AC D3QTP1
#=GS D3QTP1/362-443      OS Escherichia coli O55:H7 str. CB9615
#=GS D3QTP1/362-443      DE Sigma-54 dependent transcriptional regulator RtcR
#=GS D3QTP1/362-443      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS C3SPU7/362-443      AC C3SPU7
#=GS C3SPU7/362-443      OS Escherichia coli
#=GS C3SPU7/362-443      DE Putative 2-component regulator
#=GS C3SPU7/362-443      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0F6CA08/362-443  AC A0A0F6CA08
#=GS A0A0F6CA08/362-443  OS Escherichia coli Xuzhou21
#=GS A0A0F6CA08/362-443  DE Putative 2-component regulator
#=GS A0A0F6CA08/362-443  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0H3PUK3/362-443  AC A0A0H3PUK3
#=GS A0A0H3PUK3/362-443  OS Escherichia coli O157:H7 str. EC869
#=GS A0A0H3PUK3/362-443  DE Sigma-54 dependent transcriptional regulator RtcR
#=GS A0A0H3PUK3/362-443  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0V9MSK0/259-340  AC A0A0V9MSK0
#=GS A0A0V9MSK0/259-340  OS Escherichia coli
#=GS A0A0V9MSK0/259-340  DE Transcriptional regulator
#=GS A0A0V9MSK0/259-340  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS E9YVE8/336-418      AC E9YVE8
#=GS E9YVE8/336-418      OS Escherichia coli M863
#=GS E9YVE8/336-418      DE Sigma-54 interaction domain-containing protein
#=GS E9YVE8/336-418      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0L7AHV3/336-418  AC A0A0L7AHV3
#=GS A0A0L7AHV3/336-418  OS Escherichia coli
#=GS A0A0L7AHV3/336-418  DE Transcriptional regulator
#=GS A0A0L7AHV3/336-418  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS A0A0H2Z3M8/362-444  AC A0A0H2Z3M8
#=GS A0A0H2Z3M8/362-444  OS Escherichia coli APEC O1
#=GS A0A0H2Z3M8/362-444  DE Transcriptional regulatory protein RtcR
#=GS A0A0H2Z3M8/362-444  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GS W1F9C0/160-242      AC W1F9C0
#=GS W1F9C0/160-242      OS Escherichia coli ISC7
#=GS W1F9C0/160-242      DE Transcriptional regulatory protein RtcR
#=GS W1F9C0/160-242      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; 
#=GF SQ 26
P38035/362-443              RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL-
Q5LWU7/354-435              RDRREDIEANLIFELARAERELGTQVGFNTDARDLFLRFARDPATLWPGNFRDFGSAIRRLCTLAPRGRITRAMVEEEIKGL-
A0A384L8M9/362-443          RQRQEDIEPNLDYEVERHATLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL-
A0A3V4X3R5/362-443          RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFASSGRITLDVVEDEINRL-
A0A200LAF2/362-443          RQRQEDIEPNLDYEVERHATLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL-
A0A069XLX1/362-443          RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL-
A0A140N780/362-443          RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL-
A0A2X6Z754/362-443          RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL-
D2A9M4/362-443              RQRQEDIEPNLDYEVERHATLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL-
A0A0H2W0M5/362-443          RQRQEDIEPNLDYEVERHATLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL-
I6FDR3/362-443              RQRQEDIEPNLDYEVERHATLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL-
A0A2Y3BKX3/362-443          RQRQEDIEPNLDYEVERHATLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL-
A0A127GQM2/362-443          RQRQEDIEPNLDYEVERHATLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL-
A0A454A8T5/362-444          RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDTVEDEINRLR
A0A192EUI7/362-444          RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDTVEDEINRLR
A0A0H3JIS1/362-443          RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFASSGRITLDVVEDEINRL-
A0A1Z3UZD1/362-443          RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFASSGRITLDVVEDEINRL-
D3QTP1/362-443              RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFASSGRITLDVVEDEINRL-
C3SPU7/362-443              RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFASSGRITLDVVEDEINRL-
A0A0F6CA08/362-443          RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFASSGRITLDVVEDEINRL-
A0A0H3PUK3/362-443          RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFASSGRITLDVVEDEINRL-
A0A0V9MSK0/259-340          -QRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR
E9YVE8/336-418              RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFADSGRITLETVEDEINRLR
A0A0L7AHV3/336-418          RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFADSGRITLETVEDEINRLR
A0A0H2Z3M8/362-444          RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDTVEDEINRLR
W1F9C0/160-242              RQRQEDIEPNLDYEVERHATLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR
#=GC scorecons              86969999699579659554459559699979955595995695659599997666675965969459999555997996690
#=GC scorecons_70           *_*********_***_*_____*__*_******___*_**__*_*_*_**********_**_***__****___******_*_
#=GC scorecons_80           *_*_****_**_**__*_____*__*_******___*_**__*___*_*****____*_*__*_*__****___*****__*_
#=GC scorecons_90           *_*_****_**__*__*_____*__*_***_**___*_**__*___*_****_______*__*_*__****___**_**__*_
//