# STOCKHOLM 1.0
#=GF ID 1.10.8.140/FF/000004
#=GF DE DNA-binding protein PAE3044
#=GF AC 1.10.8.140/FF/000004
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 83.685
#=GS A9A641/15-93       AC A9A641
#=GS A9A641/15-93       OS Nitrosopumilus maritimus SCM1
#=GS A9A641/15-93       DE DNA-binding TFAR19-related protein
#=GS A9A641/15-93       DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus maritimus; 
#=GS Q8ZTX7/30-109      AC Q8ZTX7
#=GS Q8ZTX7/30-109      OS Pyrobaculum aerophilum str. IM2
#=GS Q8ZTX7/30-109      DE DNA-binding protein PAE3044
#=GS Q8ZTX7/30-109      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum; Pyrobaculum aerophilum; 
#=GS Q980F8/33-113      AC Q980F8
#=GS Q980F8/33-113      OS Saccharolobus solfataricus P2
#=GS Q980F8/33-113      DE DNA-binding protein SSO0352
#=GS Q980F8/33-113      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Saccharolobus; Saccharolobus solfataricus; 
#=GS Q58103/29-109      AC Q58103
#=GS Q58103/29-109      OS Methanocaldococcus jannaschii DSM 2661
#=GS Q58103/29-109      DE DNA-binding protein MJ0691
#=GS Q58103/29-109      DR ORG; Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; 
#=GS A0EG99/18-100      AC A0EG99
#=GS A0EG99/18-100      OS Paramecium tetraurelia
#=GS A0EG99/18-100      DE Uncharacterized protein
#=GS A0EG99/18-100      DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS A0A087S372/15-93   AC A0A087S372
#=GS A0A087S372/15-93   OS Marine Group I thaumarchaeote SCGC AAA799-P11
#=GS A0A087S372/15-93   DE Double-stranded DNA-binding domain protein
#=GS A0A087S372/15-93   DR ORG; Archaea; Thaumarchaeota; Marine Group I thaumarchaeote SCGC AAA799-P11; 
#=GS A0A2Z2HMD5/16-94   AC A0A2Z2HMD5
#=GS A0A2Z2HMD5/16-94   OS Candidatus Nitrosomarinus catalina
#=GS A0A2Z2HMD5/16-94   DE DNA-binding protein
#=GS A0A2Z2HMD5/16-94   DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosomarinus; Candidatus Nitrosomarinus catalina; 
#=GS A0A2D7BN49/16-94   AC A0A2D7BN49
#=GS A0A2D7BN49/16-94   OS Nitrosopumilus sp.
#=GS A0A2D7BN49/16-94   DE DNA-binding protein
#=GS A0A2D7BN49/16-94   DR ORG; Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Nitrosopumilus sp.; 
#=GS C3MXG4/33-113      AC C3MXG4
#=GS C3MXG4/33-113      OS Sulfolobus islandicus M.14.25
#=GS C3MXG4/33-113      DE DNA-binding protein M1425_1752
#=GS C3MXG4/33-113      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; Sulfolobus islandicus; 
#=GS A0EAE8/9-85        AC A0EAE8
#=GS A0EAE8/9-85        OS Paramecium tetraurelia
#=GS A0EAE8/9-85        DE Uncharacterized protein
#=GS A0EAE8/9-85        DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS C4KII8/33-113      AC C4KII8
#=GS C4KII8/33-113      OS Sulfolobus islandicus M.16.4
#=GS C4KII8/33-113      DE DNA-binding protein M164_1799
#=GS C4KII8/33-113      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; Sulfolobus islandicus; 
#=GS C3MZB0/33-113      AC C3MZB0
#=GS C3MZB0/33-113      OS Sulfolobus islandicus M.16.27
#=GS C3MZB0/33-113      DE DNA-binding protein M1627_1870
#=GS C3MZB0/33-113      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; Sulfolobus islandicus; 
#=GS A0A2T9XFA9/33-113  AC A0A2T9XFA9
#=GS A0A2T9XFA9/33-113  OS Sulfolobus islandicus
#=GS A0A2T9XFA9/33-113  DE DNA-binding protein DDW12_00490
#=GS A0A2T9XFA9/33-113  DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; Sulfolobus islandicus; 
#=GS C3N7D0/33-113      AC C3N7D0
#=GS C3N7D0/33-113      OS Sulfolobus islandicus Y.G.57.14
#=GS C3N7D0/33-113      DE DNA-binding protein YG5714_1868
#=GS C3N7D0/33-113      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; Sulfolobus islandicus; 
#=GS C3MR75/33-113      AC C3MR75
#=GS C3MR75/33-113      OS Sulfolobus islandicus L.S.2.15
#=GS C3MR75/33-113      DE DNA-binding protein LS215_1892
#=GS C3MR75/33-113      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; Sulfolobus islandicus; 
#=GS D2PD94/33-113      AC D2PD94
#=GS D2PD94/33-113      OS Sulfolobus islandicus L.D.8.5
#=GS D2PD94/33-113      DE DNA-binding protein LD85_2009
#=GS D2PD94/33-113      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; Sulfolobus islandicus; 
#=GS C3NGA4/33-113      AC C3NGA4
#=GS C3NGA4/33-113      OS Sulfolobus islandicus Y.N.15.51
#=GS C3NGA4/33-113      DE DNA-binding protein YN1551_1057
#=GS C3NGA4/33-113      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus; Sulfolobus islandicus; 
#=GS A0A0E3JTV1/33-113  AC A0A0E3JTV1
#=GS A0A0E3JTV1/33-113  OS Saccharolobus solfataricus
#=GS A0A0E3JTV1/33-113  DE DNA-binding protein SSOP1_0333
#=GS A0A0E3JTV1/33-113  DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Saccharolobus; Saccharolobus solfataricus; 
#=GS D0KS43/33-113      AC D0KS43
#=GS D0KS43/33-113      OS Saccharolobus solfataricus 98/2
#=GS D0KS43/33-113      DE DNA-binding protein Ssol_1326
#=GS D0KS43/33-113      DR ORG; Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Saccharolobus; Saccharolobus solfataricus; 
#=GF SQ 19
A9A641/15-93               ----------NHE-LAAQKEQILKQILVPEARMRLNNIKMVKPELADLVEQYLIGMATQGKIPGQITDDQLKQILLST-QQPKREFKFNRV--
Q8ZTX7/30-109              ---------RQAQIVAAQRRIALKKILTPEALARLDNIRVVRPELAEALEQQLINLAATGRVRVPIDEETLKKILEAVYSQTRREYRFR----
Q980F8/33-113              ---------RKAE-LESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQSGRIKIPITDEELKQILEQISQQNRRDFKIQIR--
Q58103/29-109              -----------LE-AEMQKRALLRKILTPEARERLERIRLARPEFAEAVEVQLIQLAQLGRLPIPLSDEDFKALLERISALTKRKREIKIVRK
A0EG99/18-100              ---------QKEQ-MEEIKKSILTQILTPEAKQRLANIKLVKPEKAELIEVQLCQWAKQGKITNQLSEEELIKLLEAAEGQKKQDTKVTFKRR
A0A087S372/15-93           ----------NHE-QAAQKEQILKQILVPEARMRLNNIKMVKPELADLVEQYLIGMATQGKISGQISDDQLKQILLST-QQPKRDFKFNRV--
A0A2Z2HMD5/16-94           ----------NHE-AAAQKEQILKQILTPEARMRLNNIKMVKPELSDLVEQYLIGMATQGKMPGQITDDQLKQILIST-QQPKRDFKINRV--
A0A2D7BN49/16-94           ----------NHE-AAAQKEQILKQILTPEARMRLNNIKMVKPELSDLVEQYLIGMATQGKMPGQITDDQLKQILIST-QQPKRDFKINRV--
C3MXG4/33-113              ---------RKAE-LESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQSGRIKVPLTDEELKQILEQISEQNRRDFKIQIR--
A0EAE8/9-85                LEQLKQQQAQKEQ-MEEVKKSILTQILTPEAKQRLANIKLVKPEKAELIEVQLCQWAKQGKITNQLSEDELIKLLEAA---------------
C4KII8/33-113              ---------RKAE-LESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQSGRIKVPLTDEELKQILEQISEQNRRDFKIQIR--
C3MZB0/33-113              ---------RKAE-LESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQSGRIKVPLTDEELKQILEQISEQNRRDFKIQIR--
A0A2T9XFA9/33-113          ---------RKAE-LESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQSGRIKVPITDEELKQILEQISEQNRRDFKIQIR--
C3N7D0/33-113              ---------RKAE-LESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQSGRIKVPITDEELKQILEQISEQNRRDFKIQIR--
C3MR75/33-113              ---------RKAE-LESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQSGRIKVPITDEELKQILEQISEQNRRDFKIQIR--
D2PD94/33-113              ---------RKAE-LESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQSGRIKVPITDEELKQILEQISEQNRRDFKIQIR--
C3NGA4/33-113              ---------RKAE-LESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQSGRIKVPITDEELKQILEQISEQNRRDFKIQIR--
A0A0E3JTV1/33-113          ---------RKAE-LESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQSGRIKIPITDEELKQILEQISQQNRRDFKIQIR--
D0KS43/33-113              ---------RKAE-LESQKESILRVILTPEARQRLTNIKLVKPEFAESLENQLIALAQSGRIKIPITDEELKQILEQISQQNRRDFKIQIR--
#=GC scorecons             000000000254704546864795499799964994897687994774594696459449764356577586669545236356545433300
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