# STOCKHOLM 1.0
#=GF ID 1.10.8.1190/FF/000004
#=GF DE Replicase polyprotein 1a
#=GF AC 1.10.8.1190/FF/000004
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 14.100
#=GS P0C6X8/1612-1734  AC P0C6X8
#=GS P0C6X8/1612-1734  OS Murine hepatitis virus strain 2
#=GS P0C6X8/1612-1734  DE Replicase polyprotein 1ab
#=GS P0C6X8/1612-1734  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6X8/1612-1734  DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; 
#=GS P0C6V1/1664-1786  AC P0C6V1
#=GS P0C6V1/1664-1786  OS Murine hepatitis virus strain JHM
#=GS P0C6V1/1664-1786  DE Replicase polyprotein 1a
#=GS P0C6V1/1664-1786  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6V1/1664-1786  DR GO; GO:0004197; GO:0097264; 
#=GS P0C6V1/1664-1786  DR EC; 3.4.19.12; 3.4.22.69; 
#=GS P0C6V0/1665-1787  AC P0C6V0
#=GS P0C6V0/1665-1787  OS Murine hepatitis virus strain A59
#=GS P0C6V0/1665-1787  DE Replicase polyprotein 1a
#=GS P0C6V0/1665-1787  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6V0/1665-1787  DR GO; GO:0097264; 
#=GS P0C6V0/1665-1787  DR EC; 3.4.19.12; 3.4.22.69; 
#=GS P0C6Y0/1664-1786  AC P0C6Y0
#=GS P0C6Y0/1664-1786  OS Murine hepatitis virus strain JHM
#=GS P0C6Y0/1664-1786  DE Replicase polyprotein 1ab
#=GS P0C6Y0/1664-1786  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6Y0/1664-1786  DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; 
#=GS P0C6X9/1665-1787  AC P0C6X9
#=GS P0C6X9/1665-1787  OS Murine hepatitis virus strain A59
#=GS P0C6X9/1665-1787  DE Replicase polyprotein 1ab
#=GS P0C6X9/1665-1787  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6X9/1665-1787  DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; 
#=GS P0C6U9/1612-1734  AC P0C6U9
#=GS P0C6U9/1612-1734  OS Murine hepatitis virus strain 2
#=GS P0C6U9/1612-1734  DE Replicase polyprotein 1a
#=GS P0C6U9/1612-1734  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P0C6U9/1612-1734  DR EC; 3.4.19.12; 3.4.22.69; 
#=GS I7AWB5/1664-1786  AC I7AWB5
#=GS I7AWB5/1664-1786  OS Murine coronavirus
#=GS I7AWB5/1664-1786  DE Polyprotein ORF1ab
#=GS I7AWB5/1664-1786  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C6GHR8/1663-1785  AC C6GHR8
#=GS C6GHR8/1663-1785  OS Rat coronavirus Parker
#=GS C6GHR8/1663-1785  DE Orf1ab polyprotein
#=GS C6GHR8/1663-1785  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C6GHR9/1663-1785  AC C6GHR9
#=GS C6GHR9/1663-1785  OS Rat coronavirus Parker
#=GS C6GHR9/1663-1785  DE Orf1a polyprotein
#=GS C6GHR9/1663-1785  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS Q9J3E9/1662-1784  AC Q9J3E9
#=GS Q9J3E9/1662-1784  OS Murine hepatitis virus
#=GS Q9J3E9/1662-1784  DE RNA-directed RNA polymerase
#=GS Q9J3E9/1662-1784  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C0KYS8/1665-1787  AC C0KYS8
#=GS C0KYS8/1665-1787  OS Murine coronavirus RA59/SJHM
#=GS C0KYS8/1665-1787  DE ORF1a polyprotein
#=GS C0KYS8/1665-1787  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C0KYT7/1665-1787  AC C0KYT7
#=GS C0KYT7/1665-1787  OS Murine coronavirus repA59/RJHM
#=GS C0KYT7/1665-1787  DE ORF1a polyprotein
#=GS C0KYT7/1665-1787  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C0KYQ8/1665-1787  AC C0KYQ8
#=GS C0KYQ8/1665-1787  OS Murine coronavirus RA59/R13
#=GS C0KYQ8/1665-1787  DE ORF1a polyprotein
#=GS C0KYQ8/1665-1787  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS I7B5F2/1664-1786  AC I7B5F2
#=GS I7B5F2/1664-1786  OS Murine coronavirus
#=GS I7B5F2/1664-1786  DE Polyprotein ORF1a
#=GS I7B5F2/1664-1786  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GF SQ 14
P0C6X8/1612-1734          SGLSAADLVAVTDAFGFDEPQLLKYYNMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVVLREADLSGAT
P0C6V1/1664-1786          SGLSAADLAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGAT
P0C6V0/1665-1787          SDLSEADLVAVKDAFGFDEPQLLKYYTMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGAT
P0C6Y0/1664-1786          SGLSAADLAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWRRPGNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVELREADLSGAT
P0C6X9/1665-1787          SDLSEADLVAVKDAFGFDEPQLLKYYTMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGAT
P0C6U9/1612-1734          SGLSAADLVAVTDAFGFDEPQLLKYYNMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFHKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFMRVVLREADLSGAT
I7AWB5/1664-1786          SGLSAADLAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGAT
C6GHR8/1663-1785          SGLSEADLVAVKDAFGFDEPQLLKYYNMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLNLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGAT
C6GHR9/1663-1785          SGLSEADLVAVKDAFGFDEPQLLKYYNMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLNLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGAT
Q9J3E9/1662-1784          SDLSEADLVAVKDAFGFDEPQLLKYYTMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGAT
C0KYS8/1665-1787          SDLSEADLVAVKDAFGFDEPQLLKYYTMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGAT
C0KYT7/1665-1787          SDLSEADLVAVKDAFGFDEPQLLKYYTMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGAT
C0KYQ8/1665-1787          SDLSEADLVAVKDAFGFDEPQLLKYYTMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSIDFMRVVLREADLSGAT
I7B5F2/1664-1786          SGLSAADLAAVKDAFGFDEPQLLQYYSMLGMCKWPVVVCGNYFAFKQSNNNCYINVACLMLQHLSLKFPKWQWQEAWNEFRSGKPLRFVSLVLAKGSFKFNEPSDSTDFIRVVLREADLSGAT
#=GC scorecons            969959996997999999999996995999999999999999999999999999999999999979997999976669999999999999999999999999999969969969999999999
#=GC scorecons_70         ****_***_*****************_*************************************************_***********************************_**********
#=GC scorecons_80         *_**_***_**_***********_**_**********************************************____*****************************_**_**_**********
#=GC scorecons_90         *_**_***_**_***********_**_*************************************_***_****____*****************************_**_**_**********
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