# STOCKHOLM 1.0
#=GF ID 1.10.601.10/FF/000007
#=GF DE RNA polymerase sigma factor sigB
#=GF AC 1.10.601.10/FF/000007
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 40.765
#=GS Q9LD95/124-383  AC Q9LD95
#=GS Q9LD95/124-383  OS Arabidopsis thaliana
#=GS Q9LD95/124-383  DE RNA polymerase sigma factor sigF, chloroplastic
#=GS Q9LD95/124-383  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9LD95/124-383  DR GO; GO:0005515; GO:0006352; GO:0009507; GO:0009536; GO:0016987; GO:0045893; GO:0071482; GO:0071483; GO:0090351; 
#=GS O22056/88-408   AC O22056
#=GS O22056/88-408   OS Arabidopsis thaliana
#=GS O22056/88-408   DE RNA polymerase sigma factor sigB
#=GS O22056/88-408   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS O22056/88-408   DR GO; GO:0006352; GO:0006399; GO:0009507; GO:0009658; GO:0010114; GO:0016987; GO:0071482; GO:2001141; 
#=GS R0IC61/88-407   AC R0IC61
#=GS R0IC61/88-407   OS Capsella rubella
#=GS R0IC61/88-407   DE RNA polymerase sigma factor
#=GS R0IC61/88-407   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS D7KIT0/88-408   AC D7KIT0
#=GS D7KIT0/88-408   OS Arabidopsis lyrata subsp. lyrata
#=GS D7KIT0/88-408   DE RNA polymerase sigma factor
#=GS D7KIT0/88-408   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GF SQ 4
Q9LD95/124-383          --------------KLPAVVSPLADAELCDVVALAQKALSASKQAALLVDDTEAN------------------------------------------PSDNIKDSLSTSSSM--------SLPEKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK----QGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIR
O22056/88-408           AKYLEALASETLLTSDEAVVV----AAAAEAVALARAAVKVAKDATLFKNSNNTNLLTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKA---RRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIR
R0IC61/88-407           AKYLEALASETLLTSDEAVVA----AAAAEAVALARAAVKVAKDATLFKNSNNTNLLISSTADKRSKWDQFTEKERAGILGHLAVSDTGIVSDKSTAPASNKESSADLISEIQ-EVELVEEQPAASLAVRSTRQTERKA---RRAKGLEKSASAIPSVKTGSSPRKKRVVAQEVDHNDPLRYLRVTTSSSKLLTVREEHELSAGIQDLLKLERLQAELTERCGRQPTFSQWASAAGVDQKSLRKRINYGTQCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIR
D7KIT0/88-408           AKYLEALASETLLTSDEAVVV----AAAAEAVALARAAVKVAKDATLFKNSNNTNLLISSTADKRSKWDQFTEKERAGILGHLAVSDNGIVSDKITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKA---RRAKGLEKTASGIPSVKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIR
#=GC scorecons          2222222222222242399930000944465999954954559495953545559221222222222222222222222222222221222222122654935442442943202222124393253499949949969000945953633446345399553363921229559559595453245454599956993994539949999965565944539459944599494964434963496494256695945959996499949944959599959995399565599945449469599969996956999534499499
#=GC scorecons_70       _________________***_____*___*_****__*____*_*_*_______*__________________________________________*__*________*____________*_____***_**_****___*__*__*____*____**____*_*____*__*__*_*___________***_***_**___**_******__*_*____*__**___**_*_**____**__**_*___***_*__*_****_***_**__*_*_***_***__**_*__***____*_**_*********_****____**_**
#=GC scorecons_80       _________________***_____*_____****__*____*_*_*_______*_____________________________________________*________*____________*_____***_**_**_*___*__*____________**______*____*__*__*_*___________***__**_**___**_*****_____*____*__**___**_*_*_____*___*__*_____*_*__*_***__***_**__*_*_***_***__**____***____*__*_***_***_*__***____**_**
#=GC scorecons_90       _________________***_____*_____****__*____*_*_*_______*_____________________________________________*________*____________*_____***_**_**_*___*__*____________**______*____*__*__*_*___________***__**_**___**_*****_____*____*__**___**_*_*_____*___*__*_____*_*__*_***__***_**__*_*_***_***__**____***____*__*_***_***_*__***____**_**
//