# STOCKHOLM 1.0 #=GF ID 1.10.601.10/FF/000004 #=GF DE RNA polymerase sigma factor sigA #=GF AC 1.10.601.10/FF/000004 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 22.904 #=GS Q0J7T6/235-351 AC Q0J7T6 #=GS Q0J7T6/235-351 OS Oryza sativa Japonica Group #=GS Q0J7T6/235-351 DE RNA polymerase sigma factor sigA #=GS Q0J7T6/235-351 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS Q0J7T6/235-351 DR GO; GO:0006355; GO:0080005; GO:2001141; #=GS K7UB44/219-335 AC K7UB44 #=GS K7UB44/219-335 OS Zea mays #=GS K7UB44/219-335 DE Sigma factor 1B #=GS K7UB44/219-335 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS I1I198/246-362 AC I1I198 #=GS I1I198/246-362 OS Brachypodium distachyon #=GS I1I198/246-362 DE Uncharacterized protein #=GS I1I198/246-362 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; #=GS A0A3L6PNX3/222-338 AC A0A3L6PNX3 #=GS A0A3L6PNX3/222-338 OS Panicum miliaceum #=GS A0A3L6PNX3/222-338 DE RNA polymerase sigma factor sigA #=GS A0A3L6PNX3/222-338 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum miliaceum; #=GS K3YH90/214-330 AC K3YH90 #=GS K3YH90/214-330 OS Setaria italica #=GS K3YH90/214-330 DE Uncharacterized protein #=GS K3YH90/214-330 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; #=GS C5YHG2/216-332 AC C5YHG2 #=GS C5YHG2/216-332 OS Sorghum bicolor #=GS C5YHG2/216-332 DE Uncharacterized protein #=GS C5YHG2/216-332 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GS A0A0D9X4Q8/234-349 AC A0A0D9X4Q8 #=GS A0A0D9X4Q8/234-349 OS Leersia perrieri #=GS A0A0D9X4Q8/234-349 DE Uncharacterized protein #=GS A0A0D9X4Q8/234-349 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; #=GS A0A0E0QEQ6/235-351 AC A0A0E0QEQ6 #=GS A0A0E0QEQ6/235-351 OS Oryza rufipogon #=GS A0A0E0QEQ6/235-351 DE Uncharacterized protein #=GS A0A0E0QEQ6/235-351 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; #=GS A0A0E0EIC4/240-356 AC A0A0E0EIC4 #=GS A0A0E0EIC4/240-356 OS Oryza meridionalis #=GS A0A0E0EIC4/240-356 DE Uncharacterized protein #=GS A0A0E0EIC4/240-356 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; #=GS A0A0E0LRL8/245-361 AC A0A0E0LRL8 #=GS A0A0E0LRL8/245-361 OS Oryza punctata #=GS A0A0E0LRL8/245-361 DE Uncharacterized protein #=GS A0A0E0LRL8/245-361 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza punctata; #=GS A0A0D3GWN5/161-277 AC A0A0D3GWN5 #=GS A0A0D3GWN5/161-277 OS Oryza barthii #=GS A0A0D3GWN5/161-277 DE Uncharacterized protein #=GS A0A0D3GWN5/161-277 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; #=GS I1QFY1/243-359 AC I1QFY1 #=GS I1QFY1/243-359 OS Oryza glaberrima #=GS I1QFY1/243-359 DE Uncharacterized protein #=GS I1QFY1/243-359 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; #=GS A0A2T7D3T0/222-338 AC A0A2T7D3T0 #=GS A0A2T7D3T0/222-338 OS Panicum hallii var. hallii #=GS A0A2T7D3T0/222-338 DE Uncharacterized protein #=GS A0A2T7D3T0/222-338 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum; Panicum hallii; Panicum hallii var. hallii; #=GS A0A0E0I7K5/235-351 AC A0A0E0I7K5 #=GS A0A0E0I7K5/235-351 OS Oryza sativa f. spontanea #=GS A0A0E0I7K5/235-351 DE Uncharacterized protein #=GS A0A0E0I7K5/235-351 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; #=GS A0A2S3I0L7/222-338 AC A0A2S3I0L7 #=GS A0A2S3I0L7/222-338 OS Panicum hallii #=GS A0A2S3I0L7/222-338 DE Uncharacterized protein #=GS A0A2S3I0L7/222-338 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum; Panicum hallii; #=GS A2YRJ0/88-203 AC A2YRJ0 #=GS A2YRJ0/88-203 OS Oryza sativa Indica Group #=GS A2YRJ0/88-203 DE Uncharacterized protein #=GS A2YRJ0/88-203 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS A0A0E0EIC5/241-356 AC A0A0E0EIC5 #=GS A0A0E0EIC5/241-356 OS Oryza meridionalis #=GS A0A0E0EIC5/241-356 DE Uncharacterized protein #=GS A0A0E0EIC5/241-356 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; #=GS A0A0E0EIC6/134-249 AC A0A0E0EIC6 #=GS A0A0E0EIC6/134-249 OS Oryza meridionalis #=GS A0A0E0EIC6/134-249 DE Uncharacterized protein #=GS A0A0E0EIC6/134-249 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; #=GS A0A0D9X4Q9/247-362 AC A0A0D9X4Q9 #=GS A0A0D9X4Q9/247-362 OS Leersia perrieri #=GS A0A0D9X4Q9/247-362 DE Uncharacterized protein #=GS A0A0D9X4Q9/247-362 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; #=GS A0A3L6RJ11/223-338 AC A0A3L6RJ11 #=GS A0A3L6RJ11/223-338 OS Panicum miliaceum #=GS A0A3L6RJ11/223-338 DE RNA polymerase sigma factor sigA #=GS A0A3L6RJ11/223-338 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum miliaceum; #=GS Q9ZTI2/64-180 AC Q9ZTI2 #=GS Q9ZTI2/64-180 OS Zea mays #=GS Q9ZTI2/64-180 DE RNA polymerase sigma factor 2 #=GS Q9ZTI2/64-180 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS O24348/216-332 AC O24348 #=GS O24348/216-332 OS Sorghum bicolor #=GS O24348/216-332 DE Plastid RNA polymerase sigma factor #=GS O24348/216-332 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GF SQ 22 Q0J7T6/235-351 WLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKT- K7UB44/219-335 WLQHQRSKLKEKLGNEPSYKQLAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKT- I1I198/246-362 WLQQQRSKLKEKLGNEPSYKQMAQSLRISTPELRSRMRDSFLAREVLTMSNLRLVISIAQKYDKLGVELPDLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKT- A0A3L6PNX3/222-338 WLQHKRSKLKEKLGNEPSYKQLAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKT- K3YH90/214-330 WLQHQRSKLKEKLGNEPSYKQLAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKT- C5YHG2/216-332 -LQHQRSKLKEKLGNEPSYKQLAQSLHISPPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKAF A0A0D9X4Q8/234-349 -LQQQRSKLKEKLGNDPSYKQLAHSLKISPPELRSRMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASKGFRISTYVYWWIRQGVSRALADNSKT- A0A0E0QEQ6/235-351 WLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKT- A0A0E0EIC4/240-356 WLQQQRSKLKEKLGNEPSYKQLAHSLNLSPPELRSRMRESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKT- A0A0E0LRL8/245-361 WLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMRESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKT- A0A0D3GWN5/161-277 WLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKT- I1QFY1/243-359 WLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKT- A0A2T7D3T0/222-338 WLQHQRSKLKEKLGNEPSYKQLAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKT- A0A0E0I7K5/235-351 WLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKT- A0A2S3I0L7/222-338 WLQHQRSKLKEKLGNEPSYKQLAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKT- A2YRJ0/88-203 -LQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKT- A0A0E0EIC5/241-356 -LQQQRSKLKEKLGNEPSYKQLAHSLNLSPPELRSRMRESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKT- A0A0E0EIC6/134-249 -LQQQRSKLKEKLGNEPSYKQLAHSLNLSPPELRSRMRESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKT- A0A0D9X4Q9/247-362 -LQQQRSKLKEKLGNDPSYKQLAHSLKISPPELRSRMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASKGFRISTYVYWWIRQGVSRALADNSKT- A0A3L6RJ11/223-338 -LQHQRSKLKEKLGNEPSYKQLAQSLRISATELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELVDLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKT- Q9ZTI2/64-180 WLQHQRSKLKEKLGNEPSYKQLAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKT- O24348/216-332 -LQHQRSKLKEKLGNEPSYKQLAQSLHISPPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKAF #=GC scorecons 3996899999999998999998969957968999699789999998999996999999989998999897999999999999999999998999999999999999999999799970 #=GC scorecons_70 _*************************_**_****_**********************************************************************************_ #=GC scorecons_80 _**_*******************_**_**_****_****************_************************************************************_****_ #=GC scorecons_90 _**_*******************_**__*_****_**_*************_*****************_******************************************_***__ //