# STOCKHOLM 1.0 #=GF ID 1.10.510.10/FF/000842 #=GF DE Nuclear receptor-binding protein #=GF AC 1.10.510.10/FF/000842 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 81.881 #=GS Q9Y0Y6/190-410 AC Q9Y0Y6 #=GS Q9Y0Y6/190-410 OS Drosophila melanogaster #=GS Q9Y0Y6/190-410 DE Nuclear receptor-binding protein homolog #=GS Q9Y0Y6/190-410 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; #=GS Q9Y0Y6/190-410 DR GO; GO:0005794; GO:0005829; GO:0006888; GO:0008361; GO:0009306; GO:0012505; GO:0036335; GO:0042127; GO:0042803; #=GS Q297L2/202-427 AC Q297L2 #=GS Q297L2/202-427 OS Drosophila pseudoobscura pseudoobscura #=GS Q297L2/202-427 DE Nuclear receptor-binding protein homolog #=GS Q297L2/202-427 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; #=GS Q297L2/202-427 DR GO; GO:0006888; GO:0012505; GO:0042803; #=GS A0A126GUQ5/190-410 AC A0A126GUQ5 #=GS A0A126GUQ5/190-410 OS Drosophila melanogaster #=GS A0A126GUQ5/190-410 DE MLF1-adaptor molecule, isoform B #=GS A0A126GUQ5/190-410 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; #=GS G5ED17/124-344 AC G5ED17 #=GS G5ED17/124-344 OS Caenorhabditis elegans #=GS G5ED17/124-344 DE Uncharacterized protein #=GS G5ED17/124-344 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS B3S261/159-349 AC B3S261 #=GS B3S261/159-349 OS Trichoplax adhaerens #=GS B3S261/159-349 DE Uncharacterized protein #=GS B3S261/159-349 DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; #=GS F6ZIT4/119-335 AC F6ZIT4 #=GS F6ZIT4/119-335 OS Ciona intestinalis #=GS F6ZIT4/119-335 DE Uncharacterized protein #=GS F6ZIT4/119-335 DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; #=GS B7QHF0/62-262 AC B7QHF0 #=GS B7QHF0/62-262 OS Ixodes scapularis #=GS B7QHF0/62-262 DE Nuclear receptor-binding protein, putative #=GS B7QHF0/62-262 DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; #=GS A0A369SH32/125-315 AC A0A369SH32 #=GS A0A369SH32/125-315 OS Trichoplax sp. H2 #=GS A0A369SH32/125-315 DE Nuclear receptor-binding protein #=GS A0A369SH32/125-315 DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax sp. H2; #=GS G0NKL1/123-340 AC G0NKL1 #=GS G0NKL1/123-340 OS Caenorhabditis brenneri #=GS G0NKL1/123-340 DE Uncharacterized protein #=GS G0NKL1/123-340 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; #=GS A8XXY9/125-345 AC A8XXY9 #=GS A8XXY9/125-345 OS Caenorhabditis briggsae #=GS A8XXY9/125-345 DE Protein CBR-HPO-11 #=GS A8XXY9/125-345 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; #=GS A0A0M3QY00/215-446 AC A0A0M3QY00 #=GS A0A0M3QY00/215-446 OS Drosophila busckii #=GS A0A0M3QY00/215-446 DE Madm #=GS A0A0M3QY00/215-446 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Dorsilopha; Drosophila busckii; #=GS B4G492/197-422 AC B4G492 #=GS B4G492/197-422 OS Drosophila persimilis #=GS B4G492/197-422 DE GL24520 #=GS B4G492/197-422 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila persimilis; #=GS B3LWE6/191-423 AC B3LWE6 #=GS B3LWE6/191-423 OS Drosophila ananassae #=GS B3LWE6/191-423 DE Uncharacterized protein #=GS B3LWE6/191-423 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; #=GS A0A1W4UYJ1/200-421 AC A0A1W4UYJ1 #=GS A0A1W4UYJ1/200-421 OS Drosophila ficusphila #=GS A0A1W4UYJ1/200-421 DE nuclear receptor-binding protein homolog #=GS A0A1W4UYJ1/200-421 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ficusphila subgroup; Drosophila ficusphila; #=GS B3P2J4/187-407 AC B3P2J4 #=GS B3P2J4/187-407 OS Drosophila erecta #=GS B3P2J4/187-407 DE GG13012 #=GS B3P2J4/187-407 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; #=GS B4PUX7/189-409 AC B4PUX7 #=GS B4PUX7/189-409 OS Drosophila yakuba #=GS B4PUX7/189-409 DE Uncharacterized protein #=GS B4PUX7/189-409 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; #=GS B4QXJ3/190-410 AC B4QXJ3 #=GS B4QXJ3/190-410 OS Drosophila simulans #=GS B4QXJ3/190-410 DE GD19817 #=GS B4QXJ3/190-410 DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; #=GS G0PB38/123-340 AC G0PB38 #=GS G0PB38/123-340 OS Caenorhabditis brenneri #=GS G0PB38/123-340 DE Uncharacterized protein #=GS G0PB38/123-340 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; #=GF SQ 18 Q9Y0Y6/190-410 -FITEYMSSGSLKQFLKRTKRNAKRL-PLESWRRWCTQILSALSYLHSCSPPIIHGNLTCDSIFIQHNGLVKIGSVVPDAVHYSVRRGRER--------ERERERGAHYFQAPE-YG--AADQLTAALDIYAFGMCALEMA-----ALEIQP--SNSESTAINEETIQRTIFSLENDLQRDLIRKCLNPQPQDRPSANDLLFHPLLFEVHSLKLLTAHCLVFSPANRTMFSETAFDGLMQR--- Q297L2/202-427 IFITEYMSSGSLKQFLKRTKRNAKRL-PLESWRRWCTQILSALSYLHSCTPPIIHGNLTCDSIFIQHNGLVKIGSVVPDAVHYSVRRQWDR----ESAREQERERGAHYFQAPE-YG--AAEQLTAALDIYAFGMCALEMA-----ALEIQP--SNSESTAINEETIQRTICSLESDLQRDLIEKCLNPQPQGRPSANDLLFHPLLFEVHSLKLLTAHCLVFSPANRTMFSETAFDGLMQR--- A0A126GUQ5/190-410 -FITEYMSSGSLKQFLKRTKRNAKRL-PLESWRRWCTQILSALSYLHSCSPPIIHGNLTCDSIFIQHNGLVKIGSVVPDAVHYSVRRGRER--------ERERERGAHYFQAPE-YG--AADQLTAALDIYAFGMCALEMA-----ALEIQP--SNSESTAINEETIQRTIFSLENDLQRDLIRKCLNPQPQDRPSANDLLFHPLLFEVHSLKLLTAHCLVFSPANRTMFSETAFDGLMQR--- G5ED17/124-344 IFITEYMSSGSMSAFLQRTRKAGSSL-SIKAWKKWTTQILSALNYLHSSDPPIIHGNLTCNTVFIQQNGLIKIGCVAPDAINHHVKTC------------RENMRYMHYI-APE-YEILDNTELTSAADIYSFGICSLEIAV--IGGLSGCQ--NGSSEGPVTEDVIEKAIRSLEDPMQQDFIRQCLRKDPAERPSARELLFHQILFEVHSLKLLSAHAIVDSKKYEDV-SESAFR--IKD-NE B3S261/159-349 -----YMTSGSLKQFLKKTKKNQKGLLQEKLFKRWCRQILSALDHLASFTPPIIHGNLSLDTIYIQHNGLIKIGSVIPEAISYHAKSR------------SPSELQNLFTAAPE-YDI-KEAILTTSVDIYAFGICALEIATQFFDTKSGKK--PSPSMNYWNRGSIQNSLESLENTDLLKFLQRCLQEKPEMRPSAKELLLDKFLFEVHSL-------------------------------- F6ZIT4/119-335 IFITEYMSSGSVKKFLNKTKEIHKYK-STKSWKRWCRQILSALSYLHNCDPPIVHGNLTCDTIFIQHNGLLKIGSVAPDAIRNHVKTY------------LQIHKNLHYF-APECTDTQGSGNITPAVDIYSFGICALEMA------LPKTH--LNAENKRISLEDIERAITMLDDNQQQLFIRLCMSKDPQERPSARELLLHPVLFEVHSLKLLSAHAFVKN---QEILPENQMD--MYKLKE B7QHF0/62-262 IFITEYMSSGSLKQFLKKTKRNWHPTPSTTTSKRFEKTSRMCTFYLHSCSPPILHGNMTCDTIFIQHNGLIKIGS--GSSLHRLICHR------------FCVERHKHFRLVAS-WRRAELSMVTPAADIYSFGMCALEMA-----ALEIPG--NGDSGTQITEDVVNKTIESLENVHQKDFIRKCLRKSPQERPTARELLFHPVIFEVHALQVLAAHVIVKS--------------------- A0A369SH32/125-315 -----YMTSGSLKQFLKKTKKNQKGLLQEKLFKRWCRQILSALDHLASFTPPIIHGNLSLDTIYIQHNGLIKIGSVIPEAISYHAKSR------------SPSELQNLFTAAPE-YDI-KEAILTTSVDIYAFGICALEIATQFFDTKSGKK--PSPSMNYWNRGSIQNSLESLENTDLLKFLQRCLQEKPEMRPSAKELLLDKFLFEVHSL-------------------------------- G0NKL1/123-340 IFITEYMSSGSMSAFLQRTRKAGSPL-SIKAWKKWTTQILSALNYLHSSDPPIIHGNLTCNTVFIQQNGLIKIGCVAPDAINHHVKTC------------RENMRYMHYI-APE-YE--NNMELTSAADIYAFGICSLEIAV--IGGLSGCQ--NGSSEGPVTEDVIEKAIRSLEDPMQQDFIRQCLRKDPAERPAARELLFHQILFEVHSLKLLSAHSIVDSKRYEEV-PESAFR--IKD-N- A8XXY9/125-345 IFITEYMSSGSMSAFLQRTRKAGSPL-SIKAWKKWTTQILSALNYLHSSDPPIIHGNLTCNTVFIQQNGLIKIGCVAPDAINHHVKTC------------RENMRYMHYI-APE-YEILDNTELTSAADIYSFGICSLEIAV--IGGLSGCQ--NGSSEGPVTEDVIEKAIRSLEDPMQQDFIRQCLRKDPAERPSARELLFHQILFEVHSLKLLSAHSIVDSKKYEDV-PESAFR--IKD-NE A0A0M3QY00/215-446 IFITEYMSSGSLKQFLKRTKRNAKRL-PLESWRRWCTQILSALSYLHSCSPPIIHGNLTCDSIFIQHNGLVKIGSVVPDAVHYSVRRQHLNQPESERVRERDNERVGHYFQAPE-YG--AAEQLTAAIDIYAFGMCALEMA-----ALEIQPQCSNSESTAINEETILRTINSLDNDLQRDLILKCLNPNPQDRPSASDLLFHPLLFEVHALKLLAAHCLVFSPANRTMFSETAFDGLMQR--- B4G492/197-422 IFITEYMSSGSLKQFLKRTKRNAKRL-PLESWRRWCTQILSALSYLHSCTPPIIHGNLTCDSIFIQHNGLVKIGSVVPDAVHYSVRRQWDR----ESGREQERERGAHYFQAPE-YG--AAEQLTAALDIYAFGMCALEMA-----ALEIQP--SNSESTAINEETIQRTICSLESDLQRDLIEKCLNPHPQDRPSANDLLFHPLLFEVHSLKLLTAHCLVFSPANRTMFSETAFDGLMQR--- B3LWE6/191-423 VFITEYMSSGSLKQFLKRTKRNAKRL-PLESWRRWCTQILSALSYLHSCTPPIIHGNLTCDSIFIQHNGLVKIGSVVPDAVHYSVRRGRERDREQQREQERERERGAHYFQAPE-YG--AAEQLTAALDIYAFGMCALEMA-----ALEIQP--SNSESTAINEETIQRTILSLESDLQRDLIRKCLNPQPQDRPSANDLLFHPLLFEVHSLKLLTAHCLVFSPANRTMFSETAFDGLMQRYYQ A0A1W4UYJ1/200-421 VFITEYMSSGSLKQFLKRTKRNAKRL-PLESWRRWCTQILSALSYLHSCSPPIIHGNLTCDSIFIQHNGLVKIGSVVPDAVHYSVRRGRER--------ERERERGAHYFQAPE-YG--AADQLTAALDIYAFGMCALEMA-----ALEIQP--SNSESTAINEETIQRTIFSLENDLQRDLIRKCLNPQPQDRPSANDLLFHPLLFEVHSLKLLTAHCLVFSPANRTMFSETAFDGLMQR--- B3P2J4/187-407 -FITEYMSSGSLKQFLKRTKRNAKRL-PLESWRRWCTQILSALSYLHSCSPPIIHGNLTCDSIFIQHNGLVKIGSVVPDAVHYSVRRGRER--------ERERERGAHYFQAPE-YG--AADQLTAALDIYAFGMCALEMA-----ALEIQP--SNSESTAINEETIQRTIFSLENDLQRDLIRKCLNPQPQDRPSANDLLFHPLLFEVHSLKLLTAHCLVFSPANRTMFSETAFDGLMQR--- B4PUX7/189-409 -FITEYMSSGSLKQFLKRTKRNAKRL-PLESWRRWCTQILSALSYLHSCSPPIIHGNLTCDSIFIQHNGLVKIGSVVPDAVHYSVRRGRER--------ERERERGAHYFQAPE-YG--AADQLTAALDIYAFGMCALEMA-----ALEIQP--SNSESTAINEETIQRTIFSLENDLQRDLIRKCLNPQPQDRPSANDLLFHPLLFEVHSLKLLTAHCLVFSPANRTMFSETAFDGLMQR--- B4QXJ3/190-410 -FITEYMSSGSLKQFLKRTKRNAKRL-PLESWRRWCTQILSALSYLHSCSPPIIHGNLTCDSIFIQHNGLVKIGSVVPDAVHYSVRRGRER--------ERERERGAHYFQAPE-YG--AADQLTAALDIYAFGMCALEMA-----ALEIQP--SNSESTAINEETIQRTIFSLENDLQRDLIRKCLNPQPQDRPSANDLLFHPLLFEVHSLKLLTAHCLVFSPANRTMFSETAFDGLMQR--- G0PB38/123-340 IFITEYMSSGSMSAFLQRTRKAGSPL-SIKAWKKWTTQILSALNYLHSSDPPIIHGNLTCNTVFIQQNGLIKIGCVAPDAINHHVKTC------------RENMRYMHYI-APE-YE--NNMELTSAADIYAFGICSLEIAV--IGGLSGCQ--NGSSEGPVTEDVIEKAIRSLEDPMQQDFIRQCLRKDPAERPAARELLFHQILFEVHSLKLLSAHSIVDSKRYEEV-PESAFR--IKD-N- #=GC scorecons 3666699799966599679765354605454577755777777479685499979998767678997999699967476865546643001000000001443563367428870650044347957499969969699690000046543400455544355664855572898533646676598444955997957997755899997955636633625222323134344311332000 #=GC scorecons_70 _____********_*******____*______***__******_****__***********_**************_****___*______________________**__***_*_______**_*_*************______*__________________*___*_***___*__**__**___*__****_*****__*******________________________________ #=GC scorecons_80 _____******___**_***_____________**__******_**_*__*********___********_***_*_*_*____________________________*__***_________**_*_***_**_*_**_*_________________________*___*_***_______*__**___*__**_*__**____*******________________________________ #=GC scorecons_90 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