# STOCKHOLM 1.0
#=GF ID 1.10.472.10/FF/000315
#=GF DE RNA polymerase II holoenzyme cyclin-like subunit
#=GF AC 1.10.472.10/FF/000315
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 69.101
#=GS G5EBX3/233-333          AC G5EBX3
#=GS G5EBX3/233-333          OS Caenorhabditis elegans
#=GS G5EBX3/233-333          DE cyclin L
#=GS G5EBX3/233-333          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q4P101/216-288_329-358  AC Q4P101
#=GS Q4P101/216-288_329-358  OS Ustilago maydis 521
#=GS Q4P101/216-288_329-358  DE RNA polymerase II holoenzyme cyclin-like subunit
#=GS Q4P101/216-288_329-358  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago maydis; 
#=GS H3FJG9/159-255          AC H3FJG9
#=GS H3FJG9/159-255          OS Pristionchus pacificus
#=GS H3FJG9/159-255          DE Uncharacterized protein
#=GS H3FJG9/159-255          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS E3LPW5/233-334          AC E3LPW5
#=GS E3LPW5/233-334          OS Caenorhabditis remanei
#=GS E3LPW5/233-334          DE CRE-CYL-1 protein
#=GS E3LPW5/233-334          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GF SQ 4
G5EBX3/233-333                  VKHPHRLIVAYGHTLGITQSRPDILQRSWNYMNDGLRTDIFMRYKPETIACACIFLAARTVENPIALPSTPFH---WFEAFDTSDRDVEAIALQLVGLYARRTF--
Q4P101/216-288_329-358          ---DAASAIAEEDKVQLNEFNDEVLLMCWFILNDTYKTDIPLMYPPYMVALASIWLGLSLHPPSFDKITASLHTMQFFASLNVSLPLLAEIVQEMVSAYSVQHQVQ
H3FJG9/159-255                  VKHPHKLIFSYIHTLNLS-DRKDLVQKAWSYINDGLRTDMFLRYTPETIACACIFLAARTVEPPVALPSEPFH---WFELFDASDRDVEAIAHMLVNLYNR-----
E3LPW5/233-334                  VKHPHRLIVAYGHTLGITQSRPDILQRSWNYMNDGLRTDIFMRYSPETIACACIFLAARTVEDPIALPSTPFH---WFEAFDTSDRDVEAIALQLVGLYARKRF-P
#=GC scorecons                  3334434546325453542252656433924599546996464929356939594954443445443453559000494355493435449533693493321100
#=GC scorecons_70               _________*____________*_*___*___**__****___*_*__**_*_*_*________________*____*_____*______*____*__*_______
#=GC scorecons_80               ____________________________*___**___**____*_*___*_*_*_*________________*____*_____*______*____*__*_______
#=GC scorecons_90               ____________________________*___**___**____*_*___*_*_*_*________________*____*_____*______*____*__*_______
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