# STOCKHOLM 1.0 #=GF ID 1.10.375.10/FF/000004 #=GF DE Gag polyprotein #=GF AC 1.10.375.10/FF/000004 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 10.949 #=GS 1g03A00/1-134 AC P14077 #=GS 1g03A00/1-134 OS Human T-cell lymphotrophic virus type 1 (isolate MT-2) #=GS 1g03A00/1-134 DE Gag polyprotein #=GS 1g03A00/1-134 DR CATH; 1g03; A:1-134; #=GS 1g03A00/1-134 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P0C211/131-262 AC P0C211 #=GS P0C211/131-262 OS HTLV-1 isolate Mel 15 #=GS P0C211/131-262 DE Gag-Pro-Pol polyprotein #=GS P0C211/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P0C211/131-262 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P14078/131-262 AC P14078 #=GS P14078/131-262 OS Human T-cell lymphotrophic virus type 1 (Caribbean isolate) #=GS P14078/131-262 DE Gag-Pro-Pol polyprotein #=GS P14078/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P14078/131-262 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS P03362/131-262 AC P03362 #=GS P03362/131-262 OS Human T-cell lymphotrophic virus type 1 (strain ATK) #=GS P03362/131-262 DE Gag-Pro-Pol polyprotein #=GS P03362/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P03362/131-262 DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; #=GS Q82335/1-131 AC Q82335 #=GS Q82335/1-131 OS Human T-cell leukemia virus type I #=GS Q82335/1-131 DE p24 protein #=GS Q82335/1-131 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P14077/131-262 AC P14077 #=GS P14077/131-262 OS Human T-cell lymphotrophic virus type 1 (isolate MT-2) #=GS P14077/131-262 DE Gag polyprotein #=GS P14077/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P14076/131-262 AC P14076 #=GS P14076/131-262 OS Human T-cell lymphotrophic virus type 1 (Caribbean isolate) #=GS P14076/131-262 DE Gag polyprotein #=GS P14076/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P0C209/131-262 AC P0C209 #=GS P0C209/131-262 OS HTLV-1 isolate Mel 15 #=GS P0C209/131-262 DE Gag polyprotein #=GS P0C209/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P03345/131-262 AC P03345 #=GS P03345/131-262 OS Human T-cell lymphotrophic virus type 1 (strain ATK) #=GS P03345/131-262 DE Gag polyprotein #=GS P03345/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS Q9QRA0/131-262 AC Q9QRA0 #=GS Q9QRA0/131-262 OS Human T-cell leukemia virus type I #=GS Q9QRA0/131-262 DE Gag polyprotein #=GS Q9QRA0/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS Q9WS55/131-262 AC Q9WS55 #=GS Q9WS55/131-262 OS Simian T-lymphotropic virus 1 #=GS Q9WS55/131-262 DE Gag polyprotein #=GS Q9WS55/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS Q4QY53/141-272 AC Q4QY53 #=GS Q4QY53/141-272 OS Simian T-lymphotropic virus 1 #=GS Q4QY53/141-272 DE Gag polyprotein #=GS Q4QY53/141-272 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P10274/131-262 AC P10274 #=GS P10274/131-262 OS Human T-cell lymphotrophic virus type 1 (strain ATK) #=GS P10274/131-262 DE Gag-Pro polyprotein #=GS P10274/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P14074/131-262 AC P14074 #=GS P14074/131-262 OS Human T-cell lymphotrophic virus type 1 (Caribbean isolate) #=GS P14074/131-262 DE Gag-Pro polyprotein #=GS P14074/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS P0C210/131-262 AC P0C210 #=GS P0C210/131-262 OS HTLV-1 isolate Mel 15 #=GS P0C210/131-262 DE Gag-Pro polyprotein #=GS P0C210/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS Q9QR99/131-262 AC Q9QR99 #=GS Q9QR99/131-262 OS Human T-cell leukemia virus type I #=GS Q9QR99/131-262 DE Pr gag-pro #=GS Q9QR99/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS Q9QRA1/131-262 AC Q9QRA1 #=GS Q9QRA1/131-262 OS Human T-cell leukemia virus type I #=GS Q9QRA1/131-262 DE Pr gag-pro-pol #=GS Q9QRA1/131-262 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GS Q2VA18/89-218 AC Q2VA18 #=GS Q2VA18/89-218 OS Human T-cell leukemia virus type I #=GS Q2VA18/89-218 DE Gag protein #=GS Q2VA18/89-218 DR ORG; Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1; #=GF SQ 18 1g03A00/1-134 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITSYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKDPSWA P0C211/131-262 PVMHPHGVPPTHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLTAFAALPGSAKDPS-- P14078/131-262 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKDPS-- P03362/131-262 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKDPS-- Q82335/1-131 -VMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKDPS-- P14077/131-262 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITSYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKDPS-- P14076/131-262 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKDPS-- P0C209/131-262 PVMHPHGVPPTHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLTAFAALPGSAKDPS-- P03345/131-262 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKDPS-- Q9QRA0/131-262 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKDPS-- Q9WS55/131-262 PVMHPHGAPPSHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKDPS-- Q4QY53/141-272 PVVHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTVRLAVQQFDPTAKDLQDLLQYLCSSLIASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFSALPGSAKDPS-- P10274/131-262 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKDPS-- P14074/131-262 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKDPS-- P0C210/131-262 PVMHPHGVPPTHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLTAFAALPGSAKDPS-- Q9QR99/131-262 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKDPS-- Q9QRA1/131-262 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKDPS-- Q2VA18/89-218 PVMHPHGAPPNHRPWQMKDLQAIKQEVSQAAPGSPQFMQTIRLAVQQFDPTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAFAALPGSAKD---- #=GC scorecons 79899996996999999999999999999999999999998999999999999999999999999989999999999999999999997999999999999999999999999999997997999999997700 #=GC scorecons_70 ************************************************************************************************************************************__ #=GC scorecons_80 *******_**_***********************************************************************************************************_*************__ #=GC scorecons_90 _*_****_**_*****************************************************************************_*****************************_**_********____ //