# STOCKHOLM 1.0
#=GF ID 1.10.340.70/FF/000006
#=GF DE Retrovirus-related Pol polyprotein from transposon 297-like Protein
#=GF AC 1.10.340.70/FF/000006
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 93.824
#=GS W4ZBK7/923-993      AC W4ZBK7
#=GS W4ZBK7/923-993      OS Strongylocentrotus purpuratus
#=GS W4ZBK7/923-993      DE Uncharacterized protein
#=GS W4ZBK7/923-993      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4YGV9/772-846      AC W4YGV9
#=GS W4YGV9/772-846      OS Strongylocentrotus purpuratus
#=GS W4YGV9/772-846      DE Uncharacterized protein
#=GS W4YGV9/772-846      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4Y2C7/142-210      AC W4Y2C7
#=GS W4Y2C7/142-210      OS Strongylocentrotus purpuratus
#=GS W4Y2C7/142-210      DE Uncharacterized protein
#=GS W4Y2C7/142-210      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS A0A139WPP8/312-392  AC A0A139WPP8
#=GS A0A139WPP8/312-392  OS Tribolium castaneum
#=GS A0A139WPP8/312-392  DE Uncharacterized protein
#=GS A0A139WPP8/312-392  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS A0A139WPG8/312-392  AC A0A139WPG8
#=GS A0A139WPG8/312-392  OS Tribolium castaneum
#=GS A0A139WPG8/312-392  DE Uncharacterized protein
#=GS A0A139WPG8/312-392  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS A0A139WB68/481-553  AC A0A139WB68
#=GS A0A139WB68/481-553  OS Tribolium castaneum
#=GS A0A139WB68/481-553  DE Uncharacterized protein
#=GS A0A139WB68/481-553  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS A0A139WA14/722-799  AC A0A139WA14
#=GS A0A139WA14/722-799  OS Tribolium castaneum
#=GS A0A139WA14/722-799  DE Uncharacterized protein
#=GS A0A139WA14/722-799  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS D6WTN9/864-944      AC D6WTN9
#=GS D6WTN9/864-944      OS Tribolium castaneum
#=GS D6WTN9/864-944      DE Retrovirus-related Pol polyprotein from transposon 297-like Protein
#=GS D6WTN9/864-944      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS W4YMV4/498-572      AC W4YMV4
#=GS W4YMV4/498-572      OS Strongylocentrotus purpuratus
#=GS W4YMV4/498-572      DE Uncharacterized protein
#=GS W4YMV4/498-572      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4YMV3/990-1064     AC W4YMV3
#=GS W4YMV3/990-1064     OS Strongylocentrotus purpuratus
#=GS W4YMV3/990-1064     DE Uncharacterized protein
#=GS W4YMV3/990-1064     DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4Y2D0/902-970      AC W4Y2D0
#=GS W4Y2D0/902-970      OS Strongylocentrotus purpuratus
#=GS W4Y2D0/902-970      DE Uncharacterized protein
#=GS W4Y2D0/902-970      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4Y9J5/364-432      AC W4Y9J5
#=GS W4Y9J5/364-432      OS Strongylocentrotus purpuratus
#=GS W4Y9J5/364-432      DE Uncharacterized protein
#=GS W4Y9J5/364-432      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4YUC1/911-982      AC W4YUC1
#=GS W4YUC1/911-982      OS Strongylocentrotus purpuratus
#=GS W4YUC1/911-982      DE Uncharacterized protein
#=GS W4YUC1/911-982      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS W4XB88/857-916      AC W4XB88
#=GS W4XB88/857-916      OS Strongylocentrotus purpuratus
#=GS W4XB88/857-916      DE Uncharacterized protein
#=GS W4XB88/857-916      DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS H2XNC4/636-701      AC H2XNC4
#=GS H2XNC4/636-701      OS Ciona intestinalis
#=GS H2XNC4/636-701      DE Uncharacterized protein
#=GS H2XNC4/636-701      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GF SQ 15
W4ZBK7/923-993              -------------LLNDTSSLQFEKILLSDGDAYINFVFDALHSLSHPGIRASQKLITSRFVWPCINIDVRQWARTCLHCKRAK
W4YGV9/772-846              -----LLTPGDASIWCDTTTGKPRPYV---PLQHRLGVFHALHGLSHPGINSTLKLVASRFVWPGMNKDVRDWARDCIPCQRA-
W4Y2C7/142-210              -----------TTLLCDISTGSARPLV---PVSHRRTIFNSLHGLSHPGARATQKVITERFVWPGIKRDIRNWTRTCLECQKC-
A0A139WPP8/312-392          KLKLFTVPGSEKQIYCDDSNRRIRPFI---PKTSRYELFKHFHGMAHPGIKANIKLLTDRFVWPGINKDVSRRTRACINCQRSK
A0A139WPG8/312-392          KLKLFTVPGSEKQIYCDDSNRRIRPFI---PKTSRYELFKHFHGMAHPGIKANIKLLTDRFVWPGINKDVSRRTRACINCQRSK
A0A139WB68/481-553          --------DAEASIYCDISTNNIRPYI---PLSLRKKVFDMFHRMSHTSGRATSKAIRKKFVWPAMDATMRKWARTCVACQKAK
A0A139WA14/722-799          ---LFTVPGSEKQIYCDDSNRRIRPFI---PKTSRYELFKHFHGMAHPGIKASTKLLTDRFVWPGINKDVSRWTRACINCQRSK
D6WTN9/864-944              KLKLFTVPGSEKQIYCDDSNRRIRPFI---PKTSRYELFKHFHGMAHPGIKATTKLLTDRFVWPGINKDVSRWTRACINCQRSK
W4YMV4/498-572              -----PLPTSDGQIWCDISTGHERPYV---PKQHRRAVFDSLHNMSHPGIRATRRLLTDRFVWSGINSDVRKWAKSCLQCQRC-
W4YMV3/990-1064             -----PLPTSDGQIWCDISTGHERPYV---PKQHRRAVFDSLHYMSHPGIRATRRLLTDRFVWSGINSDVRKWAKSCLQCQRC-
W4Y2D0/902-970              -----------TTLLCDISTGSARPLV---PVSHRRTIFNSLHGLSHPGARATQKVITERFVWPGIKRDIRNWTRTCLECQKC-
W4Y9J5/364-432              ----------LTTMLCDVSTGIARPLV---PVKHRRAIFDALHRLSHPGIKATQKLVTERFVWPCINHYIRKWARTCLECQG--
W4YUC1/911-982              --------ASNSTILCDTSTTTPRPYI---PAKFRRVVFDALHNLSHPGINATQKLITERFVWPGINKDVRSWTKTCLQCQRC-
W4XB88/857-916              ---------------------IPLPSS---PGTILRTVFSALHDLSHPGIRASQRLVTDRFVWPSINTDVRKWARTCLKCQQCK
H2XNC4/636-701              --------------IGDVSTGTFRPFV---PCTMRGKVMASLHQLSHPGVRPTKDLVSTRFVWPGMRQDISKYCRTCIVCQKC-
#=GC scorecons              000000111222243573653336745000734363368446946698866763675648999757637654657596398641
#=GC scorecons_70           ________________*_*____**_____*___*___*__**_*****__*__**_*_*****_**_**__*_*_*__**___
#=GC scorecons_80           ________________*_______*_____*_______*___*___***__*_______*****_*________*_*__**___
#=GC scorecons_90           __________________________________________*___***__________****_____________*__**___
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