# STOCKHOLM 1.0 #=GF ID 1.10.287.130/FF/000068 #=GF DE PAS domain-containing sensor histidine kinase #=GF AC 1.10.287.130/FF/000068 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 89.933 #=GS Q8A524/253-330 AC Q8A524 #=GS Q8A524/253-330 OS Bacteroides thetaiotaomicron VPI-5482 #=GS Q8A524/253-330 DE Two-component system histidine kinase, FrrD #=GS Q8A524/253-330 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides thetaiotaomicron; #=GS Q74CP3/400-483 AC Q74CP3 #=GS Q74CP3/400-483 OS Geobacter sulfurreducens PCA #=GS Q74CP3/400-483 DE Sensor histidine kinase, HAMP and PAS domain-containing #=GS Q74CP3/400-483 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; Geobacter sulfurreducens; #=GS A9W9X9/497-576 AC A9W9X9 #=GS A9W9X9/497-576 OS Chloroflexus aurantiacus J-10-fl #=GS A9W9X9/497-576 DE PAS sensor protein #=GS A9W9X9/497-576 DR ORG; Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus; Chloroflexus aurantiacus; #=GS Q8TQ13/479-565 AC Q8TQ13 #=GS Q8TQ13/479-565 OS Methanosarcina acetivorans C2A #=GS Q8TQ13/479-565 DE Sensory transduction histidine kinase #=GS Q8TQ13/479-565 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina acetivorans; #=GS Q8TNE0/485-563 AC Q8TNE0 #=GS Q8TNE0/485-563 OS Methanosarcina acetivorans C2A #=GS Q8TNE0/485-563 DE Sensory transduction histidine kinase #=GS Q8TNE0/485-563 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina acetivorans; #=GS R5P3G0/252-328 AC R5P3G0 #=GS R5P3G0/252-328 OS Odoribacter sp. CAG:788 #=GS R5P3G0/252-328 DE Uncharacterized protein #=GS R5P3G0/252-328 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Odoribacteraceae; Odoribacter; Odoribacter sp. CAG:788; #=GS A0A415N7X3/250-327 AC A0A415N7X3 #=GS A0A415N7X3/250-327 OS Bacteroides intestinalis #=GS A0A415N7X3/250-327 DE HAMP domain-containing protein #=GS A0A415N7X3/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides intestinalis; #=GS A0A374WA52/250-327 AC A0A374WA52 #=GS A0A374WA52/250-327 OS Bacteroides sp. OM05-12 #=GS A0A374WA52/250-327 DE HAMP domain-containing protein #=GS A0A374WA52/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides sp. OM05-12; #=GS A0A416VS56/250-327 AC A0A416VS56 #=GS A0A416VS56/250-327 OS Bacteroides sp. AF16-49 #=GS A0A416VS56/250-327 DE HAMP domain-containing protein #=GS A0A416VS56/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides sp. AF16-49; #=GS K5D8T1/250-327 AC K5D8T1 #=GS K5D8T1/250-327 OS Bacteroides finegoldii CL09T03C10 #=GS K5D8T1/250-327 DE Uncharacterized protein #=GS K5D8T1/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides finegoldii; #=GS F3PVM9/250-327 AC F3PVM9 #=GS F3PVM9/250-327 OS Bacteroides fluxus YIT 12057 #=GS F3PVM9/250-327 DE ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein #=GS F3PVM9/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides fluxus; #=GS A0A3E5BQ12/250-327 AC A0A3E5BQ12 #=GS A0A3E5BQ12/250-327 OS Bacteroides uniformis #=GS A0A3E5BQ12/250-327 DE HAMP domain-containing protein #=GS A0A3E5BQ12/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides uniformis; #=GS A0A1Q6GUL1/250-327 AC A0A1Q6GUL1 #=GS A0A1Q6GUL1/250-327 OS Bacteroides sp. 43_46 #=GS A0A1Q6GUL1/250-327 DE PAS domain-containing sensor histidine kinase #=GS A0A1Q6GUL1/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides sp. 43_46; #=GS D6D7W1/253-330 AC D6D7W1 #=GS D6D7W1/253-330 OS Bacteroides xylanisolvens XB1A #=GS D6D7W1/253-330 DE PAS/PAC sensor signal transduction histidine kinase #=GS D6D7W1/253-330 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides xylanisolvens; #=GS A0A417X5K3/252-328 AC A0A417X5K3 #=GS A0A417X5K3/252-328 OS Odoribacter sp. OF09-27XD #=GS A0A417X5K3/252-328 DE PAS domain-containing sensor histidine kinase #=GS A0A417X5K3/252-328 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Odoribacteraceae; Odoribacter; Odoribacter sp. OF09-27XD; #=GS A0A120A0R0/250-327 AC A0A120A0R0 #=GS A0A120A0R0/250-327 OS Bacteroides stercoris #=GS A0A120A0R0/250-327 DE HAMP domain-containing protein #=GS A0A120A0R0/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides stercoris; #=GS A0A374VEL4/250-327 AC A0A374VEL4 #=GS A0A374VEL4/250-327 OS Bacteroides sp. OM08-11 #=GS A0A374VEL4/250-327 DE HAMP domain-containing protein #=GS A0A374VEL4/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides sp. OM08-11; #=GS R7EPL2/250-327 AC R7EPL2 #=GS R7EPL2/250-327 OS Bacteroides uniformis CAG:3 #=GS R7EPL2/250-327 DE Uncharacterized protein #=GS R7EPL2/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides uniformis CAG:3; #=GS A0A174RFQ0/250-327 AC A0A174RFQ0 #=GS A0A174RFQ0/250-327 OS Bacteroides caccae #=GS A0A174RFQ0/250-327 DE Two-component system histidine kinase, FrrD #=GS A0A174RFQ0/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides caccae; #=GS D0TYN1/253-330 AC D0TYN1 #=GS D0TYN1/253-330 OS Bacteroides sp. 2_1_22 #=GS D0TYN1/253-330 DE ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein #=GS D0TYN1/253-330 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides sp. 2_1_22; #=GS R6K3P7/250-327 AC R6K3P7 #=GS R6K3P7/250-327 OS Bacteroides cellulosilyticus CAG:158 #=GS R6K3P7/250-327 DE Uncharacterized protein #=GS R6K3P7/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides cellulosilyticus CAG:158; #=GS E2NCF7/250-327 AC E2NCF7 #=GS E2NCF7/250-327 OS Bacteroides cellulosilyticus DSM 14838 #=GS E2NCF7/250-327 DE ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein #=GS E2NCF7/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides cellulosilyticus; #=GS A0A1C6L3Q6/250-327 AC A0A1C6L3Q6 #=GS A0A1C6L3Q6/250-327 OS uncultured Bacteroides sp. #=GS A0A1C6L3Q6/250-327 DE Sensor protein srrB #=GS A0A1C6L3Q6/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; uncultured Bacteroides sp.; #=GS A0A0E3PEI2/231-309 AC A0A0E3PEI2 #=GS A0A0E3PEI2/231-309 OS Methanosarcina siciliae HI350 #=GS A0A0E3PEI2/231-309 DE Sensory transduction histidine kinase #=GS A0A0E3PEI2/231-309 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina siciliae; #=GS A0A178MGS4/498-575 AC A0A178MGS4 #=GS A0A178MGS4/498-575 OS Chloroflexus islandicus #=GS A0A178MGS4/498-575 DE PAS domain-containing sensor histidine kinase #=GS A0A178MGS4/498-575 DR ORG; Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus; Chloroflexus islandicus; #=GS B8GBT0/500-577 AC B8GBT0 #=GS B8GBT0/500-577 OS Chloroflexus aggregans DSM 9485 #=GS B8GBT0/500-577 DE PAS/PAC sensor signal transduction histidine kinase #=GS B8GBT0/500-577 DR ORG; Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus; Chloroflexus aggregans; #=GS A0A139KV09/253-330 AC A0A139KV09 #=GS A0A139KV09/253-330 OS Bacteroides thetaiotaomicron #=GS A0A139KV09/253-330 DE ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein #=GS A0A139KV09/253-330 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides thetaiotaomicron; #=GS B3C6J2/250-327 AC B3C6J2 #=GS B3C6J2/250-327 OS Bacteroides intestinalis DSM 17393 #=GS B3C6J2/250-327 DE ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein #=GS B3C6J2/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides intestinalis; #=GS A0A0P0GGZ4/250-327 AC A0A0P0GGZ4 #=GS A0A0P0GGZ4/250-327 OS Bacteroides cellulosilyticus #=GS A0A0P0GGZ4/250-327 DE HAMP domain-containing protein #=GS A0A0P0GGZ4/250-327 DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides cellulosilyticus; #=GS A0A0D5NCW1/400-483 AC A0A0D5NCW1 #=GS A0A0D5NCW1/400-483 OS Geobacter sulfurreducens #=GS A0A0D5NCW1/400-483 DE Histidine kinase #=GS A0A0D5NCW1/400-483 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; Geobacter sulfurreducens; #=GF SQ 30 Q8A524/253-330 ---------------EFKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGELNDEQEQLSKSIKENSERLLSITGELLNMTQVEAGKL Q74CP3/400-483 NL--------EKSATDLARLNKMKDSFLGIASHELKTPLTVIMGYAELILSDMSGKVDRNVIDMVQNISNAAARLDNIVKDMVDISMIDERR- A9W9X9/497-576 ------------DLTEEVMVDRAKTNFIGTISHELRTPLTVIRGNADLLARGLAGPLEDEQKSFVEAIRLQANNMTNLISNVITIANLDSGS- Q8TQ13/479-565 GKKAVEKLIQEKQIAEIA--NRTKSEFLANISHELRTPLNSIIGFSDLLCEQIFGELNEKQLRYAGNISKSGKHLLSLINDILDLSKVE---- Q8TNE0/485-563 ----------AKILAENS--NRSKSEFLSNMSHELRTPLNAVIGFADILNEEGFGPLNKKQKRFVGNISTSGKHLLKLINEILDLSKIEAG-- R5P3G0/252-328 ---------------EFKELDSAKTTFISTISHELKTPISAILMSLRLLEDKRVGALNPEQEELSGSIKENADRLLDITGELLNMTQVESGK- A0A415N7X3/250-327 ---------------EFKELDSAKTTFISTISHELKTPISAILMSLQLLEDKRVGALNDEQEQLSKSIKENADRLLGITGELLNMTQVEAGKL A0A374WA52/250-327 ---------------EFKELDAAKTTFISTISHELKTPISAILMSLQLLEDKRVGALNEEQEELSKSIKENSERLLGITGELLNLTQVEAGKL A0A416VS56/250-327 ---------------EFKELDAAKTTFISTISHELKTPISAILMSLQLLEDKRVGALNEEQEELSKSIKENSERLLGITGELLNLTQVEAGKL K5D8T1/250-327 ---------------EFKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGELNDEQEQLSKSIKENSERLLSITGELLNMTQVEAGKL F3PVM9/250-327 ---------------EFKELDSAKTTFISTISHELKTPISAILMSLQLLEDKRVGALNDEQEQLSNSIKENADRLLGITGELLNMTQVEAGKL A0A3E5BQ12/250-327 ---------------EFKELDSAKTTFISTISHELKTPISAILMSLQLLEDKRVGVLNDEQEQLSNSIKENADRLLGITGELLNMTQVEAGKL A0A1Q6GUL1/250-327 ---------------EFKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLLGITGELLNMTQVEAGKL D6D7W1/253-330 ---------------EFKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLLSITGELLNMTQVEAGKL A0A417X5K3/252-328 ---------------EFKELDSAKTTFISTISHELKTPISAILMSLRLLEDKRVGALNPEQEELSGSIKENADRLLDITGELLNMTQVESGK- A0A120A0R0/250-327 ---------------EFKELDTAKTTFISTISHELKTPISAILMSLQLLEDNRVGALNEEQEQLSKSIRENADRLLGITGELLNMTQVEAGKL A0A374VEL4/250-327 ---------------EFKELDTAKTTFISTISHELKTPISAILMSLQLLEDKRIGALNGEQEQLSKSIKDNAGRLLDITGELLNLTQVEAGKL R7EPL2/250-327 ---------------EFKELDSAKTTFISTISHELKTPISAILMSLQLLEDKRVGVLNDEQEQLSNSIKENADRLLGITGELLNMTQVEAGKL A0A174RFQ0/250-327 ---------------EFKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLLGITGELLNMTQVEAGKL D0TYN1/253-330 ---------------EFKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKSIKENSERLLSITGELLNMTQVEAGKL R6K3P7/250-327 ---------------EFKELDSAKTTFISTISHELKTPISAILMSLQLLEDKRVGALNDEQEQLSKSIKENADRLLGITGELLNMTQVEAGKL E2NCF7/250-327 ---------------EFKELDSAKTTFISTISHELKTPISAILMSLQLLEDKRVGALNDEQEQLSKSIKENADRLLGITGELLNMTQVEAGKL A0A1C6L3Q6/250-327 ---------------EFKELDSAKTTFISTISHELKTPISAILMSLQLLEDKRVGALNDEQEQLSKSIKENADRLLGITGELLNMTQVEAGKL A0A0E3PEI2/231-309 ----------AKILAENS--NRSKSEFLSNMSHELRTPLNAVIGFADILNEEGFGPLNKKQKRFVGNISTSGKHLLNLINEILDLSKIEAG-- A0A178MGS4/498-575 -------------LTEEVMVDRAKTNFIGTISHELRTPLTVIRGNADLLMRGLAGPLDDEQKTFVEAIRLHANNMTTLISNVITIANLDSG-- B8GBT0/500-577 --------------TEEVMVDRAKTNFIGTISHELRTPLTVIRGNADLLLRGLAGPLDEEQKSFVESIRLHANNMTNLISNVITIANLDSGS- A0A139KV09/253-330 ---------------EFKELDSAKTTFISTISHELKTPIAAIMMSLQLLEDKRVGELNDEQEQLSKSIKENSERLLSITGELLNMTQVEAGKL B3C6J2/250-327 ---------------EFKELDSAKTTFISTISHELKTPISAILMSLQLLEDKRVGALNDEQEQLSKSIKENADRLLGITGELLNMTQVEAGKL A0A0P0GGZ4/250-327 ---------------EFKELDSAKTTFISTISHELKTPISAILMSLQLLEDKRVGALNDEQEQLSKSIKENADRLLGITGELLNMTQVEAGKL A0A0D5NCW1/400-483 NL--------EKSATDLARLNKMKDSFLGIASHELKTPLTVIMGYAELILSDMSGKVDRNVIDMVQNISNAAARLDNIVKDMVDISMIDERR- #=GC scorecons 000000000000001834346459549666699997996468444557735444947646744554595445467546546565654674631 #=GC scorecons_70 _______________*____*__*__**__*********__*_____**_____*_**__*______*______*__*__*_*____**_*__ #=GC scorecons_80 _______________*_______*__*____*******___*_____**_____*_*__________*______*_____________*____ #=GC scorecons_90 _______________*_______*__*____****_**___*____________*____________*_________________________ //