# STOCKHOLM 1.0
#=GF ID 1.10.275.40/FF/000004
#=GF DE DNA repair helicase RAD3
#=GF AC 1.10.275.40/FF/000004
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 82.622
#=GS Q6TY68/165-266      AC Q6TY68
#=GS Q6TY68/165-266      OS Drosophila melanogaster
#=GS Q6TY68/165-266      DE Xeroderma pigmentosum D
#=GS Q6TY68/165-266      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q6TY68/165-266      DR GO; GO:0000439; GO:0001111; GO:0001113; GO:0005634; GO:0005675; GO:0005700; GO:0005703; GO:0005705; GO:0005737; GO:0006289; GO:0006367; GO:0006974; GO:0007088; GO:0007348; GO:0009411; GO:0010972; GO:0043139; GO:0051983; 
#=GS Q6TY79/165-266      AC Q6TY79
#=GS Q6TY79/165-266      OS Drosophila melanogaster
#=GS Q6TY79/165-266      DE Xeroderma pigmentosum D
#=GS Q6TY79/165-266      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q6TY79/165-266      DR GO; GO:0000439; GO:0001111; GO:0001113; GO:0005634; GO:0005675; GO:0005700; GO:0005703; GO:0005705; GO:0005737; GO:0006289; GO:0006367; GO:0006974; GO:0007088; GO:0007348; GO:0009411; GO:0010972; GO:0043139; GO:0051983; 
#=GS Q9XYZ2/225-329      AC Q9XYZ2
#=GS Q9XYZ2/225-329      OS Drosophila melanogaster
#=GS Q9XYZ2/225-329      DE Excision repair protein ERCC2/XPD
#=GS Q9XYZ2/225-329      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q9XYZ2/225-329      DR GO; GO:0000439; GO:0001111; GO:0001113; GO:0005634; GO:0005675; GO:0005700; GO:0005703; GO:0005705; GO:0005737; GO:0006289; GO:0006367; GO:0006974; GO:0007088; GO:0007348; GO:0009411; GO:0010972; GO:0043139; GO:0051983; 
#=GS Q6TY70/165-266      AC Q6TY70
#=GS Q6TY70/165-266      OS Drosophila melanogaster
#=GS Q6TY70/165-266      DE Xeroderma pigmentosum D
#=GS Q6TY70/165-266      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q6TY70/165-266      DR GO; GO:0000439; GO:0001111; GO:0001113; GO:0005634; GO:0005675; GO:0005700; GO:0005703; GO:0005705; GO:0005737; GO:0006289; GO:0006367; GO:0006974; GO:0007088; GO:0007348; GO:0009411; GO:0010972; GO:0043139; GO:0051983; 
#=GS Q9N3L2/247-360      AC Q9N3L2
#=GS Q9N3L2/247-360      OS Caenorhabditis elegans
#=GS Q9N3L2/247-360      DE XPD (Xeroderma Pigmentosum complementation group D) related
#=GS Q9N3L2/247-360      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS A7RNX6/225-341      AC A7RNX6
#=GS A7RNX6/225-341      OS Nematostella vectensis
#=GS A7RNX6/225-341      DE Predicted protein
#=GS A7RNX6/225-341      DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; 
#=GS C8VRA9/248-362      AC C8VRA9
#=GS C8VRA9/248-362      OS Aspergillus nidulans FGSC A4
#=GS C8VRA9/248-362      DE 5' to 3' DNA helicase (Eurofung)
#=GS C8VRA9/248-362      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus nidulans; 
#=GS A0A1H6PNY9/248-360  AC A0A1H6PNY9
#=GS A0A1H6PNY9/248-360  OS Yarrowia lipolytica
#=GS A0A1H6PNY9/248-360  DE Uncharacterized protein
#=GS A0A1H6PNY9/248-360  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia; Yarrowia lipolytica; 
#=GS A7EW97/220-335      AC A7EW97
#=GS A7EW97/220-335      OS Sclerotinia sclerotiorum 1980 UF-70
#=GS A7EW97/220-335      DE Uncharacterized protein
#=GS A7EW97/220-335      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Sclerotinia; Sclerotinia sclerotiorum; 
#=GS A0A395IA82/248-360  AC A0A395IA82
#=GS A0A395IA82/248-360  OS Aspergillus homomorphus CBS 101889
#=GS A0A395IA82/248-360  DE DNA repair helicase RAD3
#=GS A0A395IA82/248-360  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus homomorphus; 
#=GS A0A1L9X8D8/248-360  AC A0A1L9X8D8
#=GS A0A1L9X8D8/248-360  OS Aspergillus aculeatus ATCC 16872
#=GS A0A1L9X8D8/248-360  DE Uncharacterized protein
#=GS A0A1L9X8D8/248-360  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus aculeatus; 
#=GS A0A0U5GCR6/248-362  AC A0A0U5GCR6
#=GS A0A0U5GCR6/248-362  OS Aspergillus calidoustus
#=GS A0A0U5GCR6/248-362  DE Putative DNA repair helicase RAD3
#=GS A0A0U5GCR6/248-362  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus calidoustus; 
#=GS A0A1L9P5T9/248-362  AC A0A1L9P5T9
#=GS A0A1L9P5T9/248-362  OS Aspergillus versicolor CBS 583.65
#=GS A0A1L9P5T9/248-362  DE Uncharacterized protein
#=GS A0A1L9P5T9/248-362  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus versicolor; 
#=GS A0A1L9RJL3/224-337  AC A0A1L9RJL3
#=GS A0A1L9RJL3/224-337  OS Aspergillus wentii DTO 134E9
#=GS A0A1L9RJL3/224-337  DE Uncharacterized protein
#=GS A0A1L9RJL3/224-337  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus wentii; 
#=GS A0A1L9TTQ5/248-362  AC A0A1L9TTQ5
#=GS A0A1L9TTQ5/248-362  OS Aspergillus sydowii CBS 593.65
#=GS A0A1L9TTQ5/248-362  DE Uncharacterized protein
#=GS A0A1L9TTQ5/248-362  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus sydowii; 
#=GS A0A1E3BE39/248-361  AC A0A1E3BE39
#=GS A0A1E3BE39/248-361  OS Aspergillus cristatus
#=GS A0A1E3BE39/248-361  DE DNA repair helicase rad15
#=GS A0A1E3BE39/248-361  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus cristatus; 
#=GS Q6C0Y5/248-360      AC Q6C0Y5
#=GS Q6C0Y5/248-360      OS Yarrowia lipolytica CLIB122
#=GS Q6C0Y5/248-360      DE YALI0F20746p
#=GS Q6C0Y5/248-360      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia; Yarrowia lipolytica; 
#=GF SQ 17
Q6TY68/165-266              VKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYI-KTRLRVHHVV---------------
Q6TY79/165-266              VKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYI-KTRLRVHHVV---------------
Q9XYZ2/225-329              VKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYI-KTRLRVHHVVQES------------
Q6TY70/165-266              VKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYI-KTRLRVHHVV---------------
Q9N3L2/247-360              VAISQKNADRALQELQSLEGVVNRMKSSNSEKLQSEYDKLVEGLKRTERERANDERLANPVLPDQILHEAVPGNIRQANHFLLFLKRFVEYI-RHRLRTHQVLIESPAAFMKDIL---
A7RNX6/225-341              VTISRRTLDRSHANVESLASVIDRIKATDAQKLREEYNRLVEGLRQASEARDTDIVLSNPVLPDEVLQESVPGNIRKAEHFVGFMRRFIEYL-KTRLRIQHVVQESPMSFLQHIYQQV
C8VRA9/248-362              IDITEDSLRKATRGANNLERKIQDVKSSDAEKLNNEYMKLVEGLREAEQARDEDQFISNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYL-KTRMKVTHTISETPLSFLNHVKE--
A0A1H6PNY9/248-360          VDITEDSLKRATRGANHLAKKVSEARSSDSEKLKNEYNKLVDGLRDLESGEQEDTFLANPVLPEDLISEAVPGNIRKAEHFVAFLKRFIEYL-KSRMKVLHVISETPASFLKHL----
A7EW97/220-335              TDITDDSLRKATRGAINLENKISDLRDSDSEKLKDEYAKLVEGLRGADEARAEDAFMSNPALPDDLLKEAVPGNIRRAEHFVTFLKRFIEYLKKTRMKVRQVISETPASFLAHLRE--
A0A395IA82/248-360          IDLTEDSLRKATRGANNLERKISEMKSSDAEKLQNEYTKLVEGLREAEQAREEDQFISNPVLPDDLLKEAVPGNIRRAEHFVTFLKRFIEYL-KTRMKVTHTISETPLSFLTHV----
A0A1L9X8D8/248-360          IDLTEDSLRKATRGANNLERKISEMKSSDAEKLQNEYTKLVEGLREAEQAREEDQFISNPVLPDDLLKEAVPGNIRRAEHFVTFLKRFIEYL-KTRMKVTHTISETPLSFLTHV----
A0A0U5GCR6/248-362          IDISEDSLRKATRGANNLERKIQEVKSSDAEKLNNEYMKLVEGLREAEQAREEDQFISNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYL-KTRMKVTHTISETPLSFLSHVKE--
A0A1L9P5T9/248-362          IDISEDSLRKATRGANNLERKIQDVKSSDAEKLNSEYMKLVEGLREAEQAREEDQFISNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYL-KTRMKVTHTISETPLSFLNHVKE--
A0A1L9RJL3/224-337          IDLTEDSLRKATRGANNLERKIQDMKSSDAEKLQSEYSKLVEGLRDAEQAREEDQFISNPVLPDDLLKEAVPGNIRRAEHFVTFLKRFIEYL-KTRMKVTHTISETPPSFLTHVK---
A0A1L9TTQ5/248-362          IDISEDSLRKATRGANNLERKIQDVKSSDAEKLNNEYMKLVEGLREAEQAREEDQFISNPVLPEDLLKEAVPGNIRRAEHFVAFLKRFIEYL-KTRMKVTHTISETPLSFLNHVKE--
A0A1E3BE39/248-361          IDITEDSLRKATRGANNLERKIQDMKSSDAEKLQNEYSKLVEGLRKAEQAREEEQFISNPVLPDDLLTEAVPGNIRRAEHFVAFLKRFIEYL-KTRMKVTHTISETPPSFLTHVK---
Q6C0Y5/248-360              VDITEDSLKRATRGANHLAKKVSEARSSDSEKLKNEYNKLVDGLRDLESGEQEDTFLANPVLPEDLISEAVPGNIRKAEHFVAFLKRFIEYL-KSRMKVLHVISETPASFLKHL----
#=GC scorecons              6475555657675556594547565755856795599377969975653475583466998996767495999999596996498799899608696774766353423431320000
#=GC scorecons_70           *_*______*_*___*_*___*___*__*__**__**_***_***_*___*__*__*_*****_*_*_*_******_*****_*********_******_*_*_______________
#=GC scorecons_80           __*______________*__________*__**__**___*_**______*__*____*****_*_*_*_******_*_**__**_*****__*_*__*_*_________________
#=GC scorecons_90           _________________*__________*___*__**___*_**_________*____*****_____*_******_*_**__**_*****__*_*______________________
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