# STOCKHOLM 1.0
#=GF ID 1.10.274.100/FF/000015
#=GF DE DNA-directed RNA polymerase subunit
#=GF AC 1.10.274.100/FF/000015
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 81.997
#=GS Q9SVY0/636-845              AC Q9SVY0
#=GS Q9SVY0/636-845              OS Arabidopsis thaliana
#=GS Q9SVY0/636-845              DE DNA-directed RNA polymerase I subunit 1
#=GS Q9SVY0/636-845              DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9SVY0/636-845              DR GO; GO:0005634; GO:0009506; 
#=GS Q9SVY0/636-845              DR EC; 2.7.7.6; 
#=GS Q86H36/627-793              AC Q86H36
#=GS Q86H36/627-793              OS Dictyostelium discoideum
#=GS Q86H36/627-793              DE DNA-directed RNA polymerase I subunit rpa1
#=GS Q86H36/627-793              DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium discoideum; 
#=GS Q86H36/627-793              DR GO; GO:0003899; GO:0005736; GO:0006360; 
#=GS Q86H36/627-793              DR EC; 2.7.7.6; 
#=GS A0A1I9LME9/623-832          AC A0A1I9LME9
#=GS A0A1I9LME9/623-832          OS Arabidopsis thaliana
#=GS A0A1I9LME9/623-832          DE DNA-directed RNA polymerase subunit
#=GS A0A1I9LME9/623-832          DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A8J568/763-937              AC A8J568
#=GS A8J568/763-937              OS Chlamydomonas reinhardtii
#=GS A8J568/763-937              DE DNA-directed RNA polymerase subunit
#=GS A8J568/763-937              DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS A5BD07/769-979              AC A5BD07
#=GS A5BD07/769-979              OS Vitis vinifera
#=GS A5BD07/769-979              DE Uncharacterized protein
#=GS A5BD07/769-979              DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; 
#=GS F6HL45/654-864              AC F6HL45
#=GS F6HL45/654-864              OS Vitis vinifera
#=GS F6HL45/654-864              DE DNA-directed RNA polymerase subunit
#=GS F6HL45/654-864              DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; 
#=GS F1A380/616-782              AC F1A380
#=GS F1A380/616-782              OS Dictyostelium purpureum
#=GS F1A380/616-782              DE DNA-directed RNA polymerase subunit
#=GS F1A380/616-782              DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium purpureum; 
#=GS A0A1D6K250/626-735_788-852  AC A0A1D6K250
#=GS A0A1D6K250/626-735_788-852  OS Zea mays
#=GS A0A1D6K250/626-735_788-852  DE DNA-directed RNA polymerase subunit
#=GS A0A1D6K250/626-735_788-852  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS I1L9X1/621-824              AC I1L9X1
#=GS I1L9X1/621-824              OS Glycine max
#=GS I1L9X1/621-824              DE DNA-directed RNA polymerase subunit
#=GS I1L9X1/621-824              DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS R0FMZ6/624-833              AC R0FMZ6
#=GS R0FMZ6/624-833              OS Capsella rubella
#=GS R0FMZ6/624-833              DE DNA-directed RNA polymerase subunit
#=GS R0FMZ6/624-833              DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS A0A151QTE2/637-840          AC A0A151QTE2
#=GS A0A151QTE2/637-840          OS Cajanus cajan
#=GS A0A151QTE2/637-840          DE DNA-directed RNA polymerase subunit
#=GS A0A151QTE2/637-840          DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus; Cajanus cajan; 
#=GS A0A0B2QR88/263-466          AC A0A0B2QR88
#=GS A0A0B2QR88/263-466          OS Glycine soja
#=GS A0A0B2QR88/263-466          DE DNA-directed RNA polymerase I subunit rpa1
#=GS A0A0B2QR88/263-466          DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; 
#=GS A0A1D6K244/626-735_788-852  AC A0A1D6K244
#=GS A0A1D6K244/626-735_788-852  OS Zea mays
#=GS A0A1D6K244/626-735_788-852  DE DNA-directed RNA polymerase subunit
#=GS A0A1D6K244/626-735_788-852  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6K251/626-735_788-852  AC A0A1D6K251
#=GS A0A1D6K251/626-735_788-852  OS Zea mays
#=GS A0A1D6K251/626-735_788-852  DE DNA-directed RNA polymerase subunit
#=GS A0A1D6K251/626-735_788-852  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6K243/626-735_788-852  AC A0A1D6K243
#=GS A0A1D6K243/626-735_788-852  OS Zea mays
#=GS A0A1D6K243/626-735_788-852  DE DNA-directed RNA polymerase subunit
#=GS A0A1D6K243/626-735_788-852  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6K232/626-735_788-852  AC A0A1D6K232
#=GS A0A1D6K232/626-735_788-852  OS Zea mays
#=GS A0A1D6K232/626-735_788-852  DE DNA-directed RNA polymerase subunit
#=GS A0A1D6K232/626-735_788-852  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6K224/626-735_788-852  AC A0A1D6K224
#=GS A0A1D6K224/626-735_788-852  OS Zea mays
#=GS A0A1D6K224/626-735_788-852  DE DNA-directed RNA polymerase subunit
#=GS A0A1D6K224/626-735_788-852  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6K242/626-735_788-852  AC A0A1D6K242
#=GS A0A1D6K242/626-735_788-852  OS Zea mays
#=GS A0A1D6K242/626-735_788-852  DE DNA-directed RNA polymerase subunit
#=GS A0A1D6K242/626-735_788-852  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6K240/531-640_693-757  AC A0A1D6K240
#=GS A0A1D6K240/531-640_693-757  OS Zea mays
#=GS A0A1D6K240/531-640_693-757  DE DNA-directed RNA polymerase I subunit 1
#=GS A0A1D6K240/531-640_693-757  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6K228/437-546_599-663  AC A0A1D6K228
#=GS A0A1D6K228/437-546_599-663  OS Zea mays
#=GS A0A1D6K228/437-546_599-663  DE DNA-directed RNA polymerase I subunit 1
#=GS A0A1D6K228/437-546_599-663  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6K225/583-692_745-809  AC A0A1D6K225
#=GS A0A1D6K225/583-692_745-809  OS Zea mays
#=GS A0A1D6K225/583-692_745-809  DE DNA-directed RNA polymerase subunit
#=GS A0A1D6K225/583-692_745-809  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6K226/578-687_740-804  AC A0A1D6K226
#=GS A0A1D6K226/578-687_740-804  OS Zea mays
#=GS A0A1D6K226/578-687_740-804  DE DNA-directed RNA polymerase subunit
#=GS A0A1D6K226/578-687_740-804  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6K227/62-171_224-288   AC A0A1D6K227
#=GS A0A1D6K227/62-171_224-288   OS Zea mays
#=GS A0A1D6K227/62-171_224-288   DE DNA-directed RNA polymerase I subunit 1
#=GS A0A1D6K227/62-171_224-288   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1D6K231/62-171_224-288   AC A0A1D6K231
#=GS A0A1D6K231/62-171_224-288   OS Zea mays
#=GS A0A1D6K231/62-171_224-288   DE DNA-directed RNA polymerase I subunit 1
#=GS A0A1D6K231/62-171_224-288   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GF SQ 24
Q9SVY0/636-845                      SNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSG-DLTKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFA--DYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLII-
Q86H36/627-793                      RNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAILYASCWS-----------------VNTKHPIVTPPPCILKPVPLWSGKQLISAALNQLTIGRAPLNLEAPSKIPTKMWGTKGLEITR---------------------DSHVIIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFT---------
A0A1I9LME9/623-832                  SNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSG-DLTKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFA--DYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLII-
A8J568/763-937                      TDGKPIRGLIQDHVVAATLITKRGTYFTADEYRQLVYIACTPWATGKA---RPKVTVTAAGSSFDIDLEPPCTLKPRQLWSGKQVVSTVISFFTRGLPPLSFSAGGKVPASYWGA-------------------------GSGEDEMQFHRGALVRGVVDKNAFG--KYGLVHAVQELYGNTTAGKLLSAFSRLFTYYLQWHGFT---------
A5BD07/769-979                      SRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLS-SGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFD--KYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLIS
F6HL45/654-864                      SRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLS-SGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFD--KYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLIS
F1A380/616-782                      RNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQSILYACLWS-----------------VNTKHPIVTPPPCIFKPVPLWSGKQLISAALTHLTIGRVPLNLEAPSKIPIKMWGTHGPDVTR---------------------DSLVIIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTILGRMFTSYLQTRGFT---------
A0A1D6K250/626-735_788-852          RSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQLVFGSCVPSSNCGS---HHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCPPFTVEQKGKIPKEYL-------------------------QKDRSELVLYIHNNELIKGIIDKAQFG--KYGIVHTVHELYGAYTAGILLSTFSRLFTLFLQLHGFT---------
I1L9X1/621-824                      TSGDPIRALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMFLFPPAIWKPEPLWTGKQVISALLYYITRGSPPFTAEKNAKIPSNFFKTQIRKGKRYTE-DTSKK-------KDKPDEDKLLIYKNDLVRGVVDKAQFG--DYGMIHTVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLT
R0FMZ6/624-833                      SNGDPLRALIQDHIVSSVLLTKRDTFLDKDLFNQLLFSSGVTDMVLSSFSGKSGKKVTISASDAELLTVMPAILKPVPLWTGKQVITTVLNLITKGHPPFTVEKATKLPVDFFKCRSREVKPNTG-DLTKKKDIDESWKQDLNEDKLLIRKNEFVCGVIDKAQFA--DFGMVHTVHELYGSNAAGNLLSVFSRLFTAFLQIHGFTCGVDDLII-
A0A151QTE2/637-840                  TSGDPIRALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFVSNSESEMFLFPPAIWRPEPLWTGKQVISALLCYITRGSPPFTVEKNTKIPPNFFKTQIREGKRYNL-DTSRK-------KDEPDEDKLLIYKNDLVRGVVDKAQFG--DYGIIHTVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMIT
A0A0B2QR88/263-466                  TSGDPIRALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMFLFPPAIWKPEPLWTGKQVISALLYYITRGSPPFTAEKNAKIPSNFFKTQIRKGKRYTE-DTSKK-------KDKPDEDKLLIYKNDLVRGVVDKAQFG--DYGMIHTVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLT
A0A1D6K244/626-735_788-852          RSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQLVFGSCVPSSNCGS---HHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCPPFTVEQKGKIPKEYL-------------------------QKDRSELVLYIHNNELIKGIIDKAQFG--KYGIVHTVHELYGAYTAGILLSTFSRLFTLFLQLHGFT---------
A0A1D6K251/626-735_788-852          RSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQLVFGSCVPSSNCGS---HHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCPPFTVEQKGKIPKEYL-------------------------QKDRSELVLYIHNNELIKGIIDKAQFG--KYGIVHTVHELYGAYTAGILLSTFSRLFTLFLQLHGFT---------
A0A1D6K243/626-735_788-852          RSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQLVFGSCVPSSNCGS---HHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCPPFTVEQKGKIPKEYL-------------------------QKDRSELVLYIHNNELIKGIIDKAQFG--KYGIVHTVHELYGAYTAGILLSTFSRLFTLFLQLHGFT---------
A0A1D6K232/626-735_788-852          RSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQLVFGSCVPSSNCGS---HHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCPPFTVEQKGKIPKEYL-------------------------QKDRSELVLYIHNNELIKGIIDKAQFG--KYGIVHTVHELYGAYTAGILLSTFSRLFTLFLQLHGFT---------
A0A1D6K224/626-735_788-852          RSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQLVFGSCVPSSNCGS---HHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCPPFTVEQKGKIPKEYL-------------------------QKDRSELVLYIHNNELIKGIIDKAQFG--KYGIVHTVHELYGAYTAGILLSTFSRLFTLFLQLHGFT---------
A0A1D6K242/626-735_788-852          RSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQLVFGSCVPSSNCGS---HHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCPPFTVEQKGKIPKEYL-------------------------QKDRSELVLYIHNNELIKGIIDKAQFG--KYGIVHTVHELYGAYTAGILLSTFSRLFTLFLQLHGFT---------
A0A1D6K240/531-640_693-757          RSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQLVFGSCVPSSNCGS---HHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCPPFTVEQKGKIPKEYL-------------------------QKDRSELVLYIHNNELIKGIIDKAQFG--KYGIVHTVHELYGAYTAGILLSTFSRLFTLFLQLHGFT---------
A0A1D6K228/437-546_599-663          RSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQLVFGSCVPSSNCGS---HHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCPPFTVEQKGKIPKEYL-------------------------QKDRSELVLYIHNNELIKGIIDKAQFG--KYGIVHTVHELYGAYTAGILLSTFSRLFTLFLQLHGFT---------
A0A1D6K225/583-692_745-809          RSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQLVFGSCVPSSNCGS---HHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCPPFTVEQKGKIPKEYL-------------------------QKDRSELVLYIHNNELIKGIIDKAQFG--KYGIVHTVHELYGAYTAGILLSTFSRLFTLFLQLHGFT---------
A0A1D6K226/578-687_740-804          RSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQLVFGSCVPSSNCGS---HHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCPPFTVEQKGKIPKEYL-------------------------QKDRSELVLYIHNNELIKGIIDKAQFG--KYGIVHTVHELYGAYTAGILLSTFSRLFTLFLQLHGFT---------
A0A1D6K227/62-171_224-288           RSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQLVFGSCVPSSNCGS---HHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCPPFTVEQKGKIPKEYL-------------------------QKDRSELVLYIHNNELIKGIIDKAQFG--KYGIVHTVHELYGAYTAGILLSTFSRLFTLFLQLHGFT---------
A0A1D6K231/62-171_224-288           RSGDAVRGLIQDHIVGAVLLTKPDTLLSREEYSQLVFGSCVPSSNCGS---HHPAKVSAIEDYDTLELVHPAIWKPRPLWTGKQVITTILNHLTKGCPPFTVEQKGKIPKEYL-------------------------QKDRSELVLYIHNNELIKGIIDKAQFG--KYGIVHTVHELYGAYTAGILLSTFSRLFTLFLQLHGFT---------
#=GC scorecons                      4596659699999875669899489675565747767574552333451014433563444534463544968589489969997866586569594697758535979356511111111100001000100000003332383474865876749769977960058968977699975459949974679799379947999111111010
#=GC scorecons_70                   __*_*_*********_******_**_*____*_****_*_________________*_____________***_**_***********_*___*_*__***_*___***__________________________________*__*_*__****_*********___**_*********___**_***_******_***_****_________
#=GC scorecons_80                   __*___*_*******___****_**_*____*_**_*_*_______________________________*_*_**_***_*****___*___*_*__**__*___***__________________________________*__*_*__**_*_*__**_**____**_****_****___**_***__*****_***_****_________
#=GC scorecons_90                   __*___*_******____****_**_____________________________________________*_*_**_***_***_*___*___*_*__*___*___*_*__________________________________*____*__*____*__**__*____**__*___***____**_**____*_**__**__***_________
//