# STOCKHOLM 1.0 #=GF ID 1.10.274.100/FF/000014 #=GF DE DNA-directed RNA polymerase subunit #=GF AC 1.10.274.100/FF/000014 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 75.100 #=GS G5ED21/661-830 AC G5ED21 #=GS G5ED21/661-830 OS Caenorhabditis elegans #=GS G5ED21/661-830 DE DNA-directed RNA polymerase subunit #=GS G5ED21/661-830 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS D0MYP8/655-821 AC D0MYP8 #=GS D0MYP8/655-821 OS Phytophthora infestans T30-4 #=GS D0MYP8/655-821 DE DNA-directed RNA polymerase subunit #=GS D0MYP8/655-821 DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora infestans; #=GS A9UY22/607-772 AC A9UY22 #=GS A9UY22/607-772 OS Monosiga brevicollis #=GS A9UY22/607-772 DE DNA-directed RNA polymerase subunit #=GS A9UY22/607-772 DR ORG; Eukaryota; Choanoflagellida; Salpingoecidae; Monosiga; Monosiga brevicollis; #=GS A0A0N7L4X0/654-820 AC A0A0N7L4X0 #=GS A0A0N7L4X0/654-820 OS Plasmopara halstedii #=GS A0A0N7L4X0/654-820 DE DNA-directed RNA polymerase subunit #=GS A0A0N7L4X0/654-820 DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Plasmopara; Plasmopara halstedii; #=GS A0A329SCX8/655-821 AC A0A329SCX8 #=GS A0A329SCX8/655-821 OS Phytophthora cactorum #=GS A0A329SCX8/655-821 DE DNA-directed RNA polymerase subunit #=GS A0A329SCX8/655-821 DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora cactorum; #=GS H3H1S7/655-821 AC H3H1S7 #=GS H3H1S7/655-821 OS Phytophthora ramorum #=GS H3H1S7/655-821 DE DNA-directed RNA polymerase subunit #=GS H3H1S7/655-821 DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora ramorum; #=GS W2PG99/655-821 AC W2PG99 #=GS W2PG99/655-821 OS Phytophthora parasitica INRA-310 #=GS W2PG99/655-821 DE DNA-directed RNA polymerase subunit #=GS W2PG99/655-821 DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; #=GS A0A0W8D1H8/655-821 AC A0A0W8D1H8 #=GS A0A0W8D1H8/655-821 OS Phytophthora nicotianae #=GS A0A0W8D1H8/655-821 DE DNA-directed RNA polymerase subunit #=GS A0A0W8D1H8/655-821 DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora nicotianae; #=GS G4YIV8/654-820 AC G4YIV8 #=GS G4YIV8/654-820 OS Phytophthora sojae strain P6497 #=GS G4YIV8/654-820 DE DNA-directed RNA polymerase subunit #=GS G4YIV8/654-820 DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora sojae; #=GS A0A421EWZ9/1136-1302 AC A0A421EWZ9 #=GS A0A421EWZ9/1136-1302 OS Phytophthora kernoviae #=GS A0A421EWZ9/1136-1302 DE DNA-directed RNA polymerase subunit #=GS A0A421EWZ9/1136-1302 DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora kernoviae; #=GS A0A2A6B3R6/672-841 AC A0A2A6B3R6 #=GS A0A2A6B3R6/672-841 OS Pristionchus pacificus #=GS A0A2A6B3R6/672-841 DE DNA-directed RNA polymerase subunit #=GS A0A2A6B3R6/672-841 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; #=GS E3NKC7/671-837 AC E3NKC7 #=GS E3NKC7/671-837 OS Caenorhabditis remanei #=GS E3NKC7/671-837 DE DNA-directed RNA polymerase subunit #=GS E3NKC7/671-837 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; #=GS G0MQB6/656-825 AC G0MQB6 #=GS G0MQB6/656-825 OS Caenorhabditis brenneri #=GS G0MQB6/656-825 DE DNA-directed RNA polymerase subunit #=GS G0MQB6/656-825 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; #=GS A0A261C817/654-823 AC A0A261C817 #=GS A0A261C817/654-823 OS Caenorhabditis latens #=GS A0A261C817/654-823 DE DNA-directed RNA polymerase subunit #=GS A0A261C817/654-823 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; #=GS A0A1I7TDM2/658-827 AC A0A1I7TDM2 #=GS A0A1I7TDM2/658-827 OS Caenorhabditis tropicalis #=GS A0A1I7TDM2/658-827 DE DNA-directed RNA polymerase subunit #=GS A0A1I7TDM2/658-827 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; #=GS A8XYH3/673-839 AC A8XYH3 #=GS A8XYH3/673-839 OS Caenorhabditis briggsae #=GS A8XYH3/673-839 DE DNA-directed RNA polymerase subunit #=GS A8XYH3/673-839 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; #=GS K7H648/656-824 AC K7H648 #=GS K7H648/656-824 OS Caenorhabditis japonica #=GS K7H648/656-824 DE DNA-directed RNA polymerase subunit #=GS K7H648/656-824 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; #=GS G0PME2/588-755 AC G0PME2 #=GS G0PME2/588-755 OS Caenorhabditis brenneri #=GS G0PME2/588-755 DE DNA-directed RNA polymerase subunit #=GS G0PME2/588-755 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; #=GS K7H649/656-823 AC K7H649 #=GS K7H649/656-823 OS Caenorhabditis japonica #=GS K7H649/656-823 DE DNA-directed RNA polymerase subunit #=GS K7H649/656-823 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; #=GS H3FM78/677-846 AC H3FM78 #=GS H3FM78/677-846 OS Pristionchus pacificus #=GS H3FM78/677-846 DE DNA-directed RNA polymerase subunit #=GS H3FM78/677-846 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; #=GS V9DWL7/655-821 AC V9DWL7 #=GS V9DWL7/655-821 OS Phytophthora parasitica P1569 #=GS V9DWL7/655-821 DE DNA-directed RNA polymerase subunit #=GS V9DWL7/655-821 DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; #=GS W2Y386/655-821 AC W2Y386 #=GS W2Y386/655-821 OS Phytophthora parasitica P10297 #=GS W2Y386/655-821 DE DNA-directed RNA polymerase subunit #=GS W2Y386/655-821 DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; #=GS W2FM16/655-821 AC W2FM16 #=GS W2FM16/655-821 OS Phytophthora parasitica #=GS W2FM16/655-821 DE DNA-directed RNA polymerase subunit #=GS W2FM16/655-821 DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; #=GS W2VQ31/655-821 AC W2VQ31 #=GS W2VQ31/655-821 OS Phytophthora parasitica CJ01A1 #=GS W2VQ31/655-821 DE DNA-directed RNA polymerase subunit #=GS W2VQ31/655-821 DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; #=GS A0A080YYI1/655-821 AC A0A080YYI1 #=GS A0A080YYI1/655-821 OS Phytophthora parasitica P1976 #=GS A0A080YYI1/655-821 DE DNA-directed RNA polymerase subunit #=GS A0A080YYI1/655-821 DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; #=GF SQ 25 G5ED21/661-830 KDATPLLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLASFAQ------YSKRIEIPPPTILYPKRLWTGKQVITTIVKNCIPDGKPLINLDGKAKTPLSCWIVPGFDAPQFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQFHGFT D0MYP8/655-821 TDGSPLRGLIQDHVDSGVKLTQRDTFLNKDMYMQLLYNAWASMEDSGVEKAHIETVPPAILKPEPLWTGKQVITSVLKL-LTKGLPPLNLDSKAKIK-------GDLYGSAN-NEHVVIFRDGELLQGVLDKSQFGASMYGMVHACYEVYGARIAADFLSALGRLFTCYLQFAGHT A9UY22/607-772 A-GDPLRGLIQDHVIAAVKMCCKDSFYDRHHYQTFVYSALKD----EYKGTRIVTVPPAMIKPQRLWTGKQIITTILKN-LTLNQTGMNLYGKAKIK-NAWS--ANDKGGLE-GESTVIVRNCELLCGILDKAQVGNSTYGIVHAVYEVYGGRTAGEFLSALGRVWTMWLKMHGHT A0A0N7L4X0/654-820 TDGSPLRGLIQDHVDSGVKLTQRDTFLTKDMYMQLLYNAWASMEDAGAEKAHVETIPPAILKPKQLWTGKQVITSVLKL-LTKGLPPLNLDSKAKIK-------GELYGSAN-NEHVVTFRDGELLQGVLDKSQFGASMYGMVHACYEVYGARIAADFLSALGRLLTCYLQYAGHT A0A329SCX8/655-821 TDGSPLRGLIQDHVDSGVKLTQRDTFLTKDMYMQLLYNAWASMEDAGVEKAHIETVPPTILKPEPLWTGKQAITSVLKL-LTKGLPPLNLDSKAKIK-------GDLYGSAN-NEHIVIIRDGELLQGVLDKSQFGASMYGMVHACYEVYGARIAADFLSALGRLFTCYLQFAGHT H3H1S7/655-821 TDGSPLRGLIQDHVDSGVKLTQRDTFLTKDMYMQLLYNAWASMEDAGVEKAHIETVAPAILKPEPLWTGKQVITSVLKL-LTKGLPPLNLDSKAKIK-------GDLYGSAN-NEHVVIFRDGELLQGVLDKSQFGASMHGMVHACYEVYGARIAADLLSALGRLFTCYLQFAGHT W2PG99/655-821 TDGSPLRGLIQDHVDSGVKLTQRDTFLNKDMYMQLLYNAWASMEDAGVEKAHIETVPPAILKPEPLWTGKQVITSVLKL-LTKGLPPLNLDSKAKIK-------GDLYGSAN-NEHIVIFRDGELLQGVLDKSQFGASMYGMVHACYEVYGARIAADFLSALGRLFTCYLQFAGHT A0A0W8D1H8/655-821 TDGSPLRGLIQDHVDSGVKLTQRDTFLNKDMYMQLLYNAWASMEDAGVEKAHIETVPPAILKPEPLWTGKQVITSVLKL-LTKGLPPLNLDSKAKIK-------GDLYGSAN-NEHIVIFRDGELLQGVLDKSQFGASMYGMVHACYEVYGARIAADFLSALGRLFTCYLQFAGHT G4YIV8/654-820 TDGSPLRGLIQDHVDSGVKLTQRDTFLTKDMYMQLLYNAWASMEDAGVEKAHIETVPPAILKPQPLWTGKQVITSVLKL-LTKGLPPLNLDSKAKIK-------GDLYGSAN-NEHIVIIRDGELLQGVLDKSQFGASMYGMVHACYEVYGARIAADFLSALGRLFTCYLQFAGHT A0A421EWZ9/1136-1302 TDGSPLRGLIQDHVDSGVKLTQRDTFLNKDMYMQLLYNAWACMEDVGAEKAHIETVPPAILKPEPLWTGKQVVTSVLKM-LTKGLPPLNLDSKAKIK-------GDLYGSEN-AEHIVIFRDGELLQGVLDKSQFGASMYGMVHGCYEVYGARIAADLLSALGRLFTCYLQFVGHT A0A2A6B3R6/672-841 KDATPLLGLIQDHVVSGVLLTIRGRFLQKEDFMHLLLASFAE------SSQRLEIPPPCMLKPKKLWSGKQVISAILRNCIPKDKPLINLEGKAKTPLSCWKVRGHKVPEFNMSESEVVFRQGELLVGVLDKQHYGATQYGLGHCLFELYGHRVGVRVLSCFSRLFTTFLQFHGFT E3NKC7/671-837 KDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLSSFAQ------YSKRIEIPPPTILYPKRLWTGKQVVTTIVKNCIPEGKPLINLDGKAKTPLSCWTVPGFNQPSFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQVE--- G0MQB6/656-825 KDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLASFAQ------YSKRIEIPPPTILYPKRLWTGKQVVSTIVKNCIPEGKPLINLDGKAKTPLSCWIVPGFKAPDFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQFHGFT A0A261C817/654-823 KDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLASFAQ------YSKRIEIPPPTILYPKRLWTGKQVVTTIVKNCIPEGKPLINLDGKAKTPLSCWTVPGFNQPSFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQYHGFT A0A1I7TDM2/658-827 KDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLASFAQ------YSKRIEIPPPTILYPKRLWTGKQVVTTIVKNCIPDGKPLINLDGKAKTPLSCWIVPGFKAPHFDMSESHVIFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTFLQFHGFT A8XYH3/673-839 KDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLASFAQ------YSKRIEIPPPTILYPKRLWTGKQVVSTIVKNCIPEGKPLINLDGKAKTPLSCWIVPGFKQPDFDMSESHVVFRKGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQVC--- K7H648/656-824 KDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLASFAQ------YSKRIEIPPPTILYPKRLWTGKQVVTTIVKNCIPENKPLINLDGKAKTPLSCWVVPGHQPPPFEMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQVRMG- G0PME2/588-755 KDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLASFAQ------YSKRIEIPPPTILYPKRLWTGKQVVSTIVKNCIPEGKPLINLDGKAKTPLSCWIVPGFKAPDFDMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQV-GF- K7H649/656-823 KDATPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLASFAQ------YSKRIEIPPPTILYPKRLWTGKQVVTTIVKNCIPENKPLINLDGKAKTPLSCWVVPGHQPPPFEMSESHVVFRQGELLVGVLDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQMKI-- H3FM78/677-846 KDATPLLGLIQDHVVSGVLLTIRGRFLQKEDFMHLLLASFAE------SSQRLEIPPPCMLKPKKLWSGKQVISAILRNCIPKDKPLINLEGKAKTPLSCWKVRGHKVPEFNMSESEVVFRQGELLVGVLDKQHYGATQYGLGHCLFELYGHRVGVRVLSCFSRLFTTFLQFHGFT V9DWL7/655-821 TDGSPLRGLIQDHVDSGVKLTQRDTFLNKDMYMQLLYNAWASMEDAGVEKAHIETVPPAILKPEPLWTGKQVITSVLKL-LTKGLPPLNLDSKAKIK-------GDLYGSAN-NEHIVIFRDGELLQGVLDKSQFGASMYGMVHACYEVYGARIAADFLSALGRLFTCYLQFAGHT W2Y386/655-821 TDGSPLRGLIQDHVDSGVKLTQRDTFLNKDMYMQLLYNAWASMEDAGVEKAHIETVPPAILKPEPLWTGKQVITSVLKL-LTKGLPPLNLDSKAKIK-------GDLYGSAN-NEHIVIFRDGELLQGVLDKSQFGASMYGMVHACYEVYGARIAADFLSALGRLFTCYLQFAGHT W2FM16/655-821 TDGSPLRGLIQDHVDSGVKLTQRDTFLNKDMYMQLLYNAWASMEDAGVEKAHIETVPPAILKPEPLWTGKQVITSVLKL-LTKGLPPLNLDSKAKIK-------GDLYGSAN-NEHIVIFRDGELLQGVLDKSQFGASMYGMVHACYEVYGARIAADFLSALGRLFTCYLQFAGHT W2VQ31/655-821 TDGSPLRGLIQDHVDSGVKLTQRDTFLNKDMYMQLLYNAWASMEDAGVEKAHIETVPPAILKPEPLWTGKQVITSVLKL-LTKGLPPLNLDSKAKIK-------GDLYGSAN-NEHIVIFRDGELLQGVLDKSQFGASMYGMVHACYEVYGARIAADFLSALGRLFTCYLQFAGHT A0A080YYI1/655-821 TDGSPLRGLIQDHVDSGVKLTQRDTFLNKDMYMQLLYNAWASMEDAGVEKAHIETVPPAILKPEPLWTGKQVITSVLKL-LTKGLPPLNLDSKAKIK-------GDLYGSAN-NEHIVIFRDGELLQGVLDKSQFGASMYGMVHACYEVYGARIAADFLSALGRLFTCYLQFAGHT #=GC scorecons 57659949999999488948748859868647868655658411111135467865895785955998999877576842665648569976999652222121833354462595396795899949899956798647965954796994946555995669879579853645 #=GC scorecons_70 _*__**_*******_***_**_**_**_**_**_**____*__________***__**_**_*__*********_***__*__*_*__***_***_________*_________*__****_****_*****_****__***_*__*****_*_____**_*_****_***_____ #=GC scorecons_80 _*__**_*******_***_**_**_**_*__**_*_____*___________**__**_**_*__********____*_______*__***_***_________*_________*__*_**_****_*****__***__**__*__**_**_*_____**___****_***_____ #=GC scorecons_90 ____**_*******_***_*__*__**_*_____*_____*_______________**__*_*__**_****_____*_______*__**__***_________*_________*__*__*_****_*****___**___*__*___*_**_*_____**___**_*__**_____ //