# STOCKHOLM 1.0
#=GF ID 1.10.274.100/FF/000013
#=GF DE DNA-directed RNA polymerase subunit
#=GF AC 1.10.274.100/FF/000013
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 28.719
#=GS P17545/521-674      AC P17545
#=GS P17545/521-674      OS Trypanosoma brucei brucei
#=GS P17545/521-674      DE DNA-directed RNA polymerase II subunit RPB1-B
#=GS P17545/521-674      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS P17545/521-674      DR EC; 2.7.7.6; 
#=GS Q584K3/520-673      AC Q584K3
#=GS Q584K3/520-673      OS Trypanosoma brucei brucei TREU927
#=GS Q584K3/520-673      DE DNA-directed RNA polymerase subunit
#=GS Q584K3/520-673      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q584K3/520-673      DR GO; GO:0005654; GO:0045291; 
#=GS Q57YU2/520-673      AC Q57YU2
#=GS Q57YU2/520-673      OS Trypanosoma brucei brucei TREU927
#=GS Q57YU2/520-673      DE DNA-directed RNA polymerase subunit
#=GS Q57YU2/520-673      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q57YU2/520-673      DR GO; GO:0005634; 
#=GS Q4Q600/497-648      AC Q4Q600
#=GS Q4Q600/497-648      OS Leishmania major
#=GS Q4Q600/497-648      DE DNA-directed RNA polymerase subunit
#=GS Q4Q600/497-648      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania major species complex; Leishmania major; 
#=GS Q4Q600/497-648      DR GO; GO:0005654; 
#=GS Q4DDX5/504-657      AC Q4DDX5
#=GS Q4DDX5/504-657      OS Trypanosoma cruzi strain CL Brener
#=GS Q4DDX5/504-657      DE DNA-directed RNA polymerase subunit
#=GS Q4DDX5/504-657      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum; Trypanosoma cruzi; 
#=GS G0ULQ7/521-674      AC G0ULQ7
#=GS G0ULQ7/521-674      OS Trypanosoma congolense IL3000
#=GS G0ULQ7/521-674      DE DNA-directed RNA polymerase subunit
#=GS G0ULQ7/521-674      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Nannomonas; Trypanosoma congolense; 
#=GS A0A1X0NJ78/511-664  AC A0A1X0NJ78
#=GS A0A1X0NJ78/511-664  OS Trypanosoma theileri
#=GS A0A1X0NJ78/511-664  DE DNA-directed RNA polymerase subunit
#=GS A0A1X0NJ78/511-664  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanosoma theileri; 
#=GS G0TZQ4/517-669      AC G0TZQ4
#=GS G0TZQ4/517-669      OS Trypanosoma vivax Y486
#=GS G0TZQ4/517-669      DE DNA-directed RNA polymerase subunit
#=GS G0TZQ4/517-669      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Duttonella; Trypanosoma vivax; 
#=GS A0A061J0Q4/504-657  AC A0A061J0Q4
#=GS A0A061J0Q4/504-657  OS Trypanosoma rangeli SC58
#=GS A0A061J0Q4/504-657  DE DNA-directed RNA polymerase subunit
#=GS A0A061J0Q4/504-657  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Herpetosoma; Trypanosoma rangeli; 
#=GS A0A0N1J4B0/497-648  AC A0A0N1J4B0
#=GS A0A0N1J4B0/497-648  OS Leptomonas pyrrhocoris
#=GS A0A0N1J4B0/497-648  DE DNA-directed RNA polymerase subunit
#=GS A0A0N1J4B0/497-648  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leptomonas; Leptomonas pyrrhocoris; 
#=GS A0A1G4I4P8/520-673  AC A0A1G4I4P8
#=GS A0A1G4I4P8/520-673  OS Trypanosoma equiperdum
#=GS A0A1G4I4P8/520-673  DE DNA-directed RNA polymerase subunit
#=GS A0A1G4I4P8/520-673  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma equiperdum; 
#=GS A4HJP9/497-648      AC A4HJP9
#=GS A4HJP9/497-648      OS Leishmania braziliensis
#=GS A4HJP9/497-648      DE DNA-directed RNA polymerase subunit
#=GS A4HJP9/497-648      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania braziliensis species complex; Leishmania braziliensis; 
#=GS A0A0N0P4K4/497-648  AC A0A0N0P4K4
#=GS A0A0N0P4K4/497-648  OS Leptomonas seymouri
#=GS A0A0N0P4K4/497-648  DE DNA-directed RNA polymerase subunit
#=GS A0A0N0P4K4/497-648  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leptomonas; Leptomonas seymouri; 
#=GS Q26791/520-673      AC Q26791
#=GS Q26791/520-673      OS Trypanosoma brucei
#=GS Q26791/520-673      DE DNA-directed RNA polymerase subunit
#=GS Q26791/520-673      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; 
#=GS Q26791/520-673      DR GO; GO:0005654; GO:0045291; 
#=GS C9ZMF2/520-673      AC C9ZMF2
#=GS C9ZMF2/520-673      OS Trypanosoma brucei gambiense DAL972
#=GS C9ZMF2/520-673      DE DNA-directed RNA polymerase subunit
#=GS C9ZMF2/520-673      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei gambiense; 
#=GS A0A3L6L8J1/520-673  AC A0A3L6L8J1
#=GS A0A3L6L8J1/520-673  OS Trypanosoma brucei equiperdum
#=GS A0A3L6L8J1/520-673  DE DNA-directed RNA polymerase subunit
#=GS A0A3L6L8J1/520-673  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei equiperdum; 
#=GS K2NKG9/504-657      AC K2NKG9
#=GS K2NKG9/504-657      OS Trypanosoma cruzi marinkellei
#=GS K2NKG9/504-657      DE DNA-directed RNA polymerase subunit
#=GS K2NKG9/504-657      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum; Trypanosoma cruzi; Trypanosoma cruzi marinkellei; 
#=GS A4I766/497-648      AC A4I766
#=GS A4I766/497-648      OS Leishmania infantum
#=GS A4I766/497-648      DE DNA-directed RNA polymerase subunit
#=GS A4I766/497-648      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania infantum; 
#=GS A0A088SG91/497-648  AC A0A088SG91
#=GS A0A088SG91/497-648  OS Leishmania panamensis
#=GS A0A088SG91/497-648  DE DNA-directed RNA polymerase subunit
#=GS A0A088SG91/497-648  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania guyanensis species complex; Leishmania panamensis; 
#=GS E9B260/497-648      AC E9B260
#=GS E9B260/497-648      OS Leishmania mexicana MHOM/GT/2001/U1103
#=GS E9B260/497-648      DE DNA-directed RNA polymerase subunit
#=GS E9B260/497-648      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania mexicana species complex; Leishmania mexicana; 
#=GS E9BN38/497-648      AC E9BN38
#=GS E9BN38/497-648      OS Leishmania donovani BPK282A1
#=GS E9BN38/497-648      DE DNA-directed RNA polymerase subunit
#=GS E9BN38/497-648      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania donovani; 
#=GS P17546/521-674      AC P17546
#=GS P17546/521-674      OS Trypanosoma brucei brucei
#=GS P17546/521-674      DE DNA-directed RNA polymerase II subunit RPB1-A
#=GS P17546/521-674      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS P17546/521-674      DR EC; 2.7.7.6; 
#=GS V5B7G2/474-627      AC V5B7G2
#=GS V5B7G2/474-627      OS Trypanosoma cruzi Dm28c
#=GS V5B7G2/474-627      DE DNA-directed RNA polymerase subunit
#=GS V5B7G2/474-627      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum; Trypanosoma cruzi; 
#=GS Q8ISB0/504-657      AC Q8ISB0
#=GS Q8ISB0/504-657      OS Trypanosoma cruzi
#=GS Q8ISB0/504-657      DE DNA-directed RNA polymerase subunit
#=GS Q8ISB0/504-657      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum; Trypanosoma cruzi; 
#=GS G0UT20/1-148        AC G0UT20
#=GS G0UT20/1-148        OS Trypanosoma congolense IL3000
#=GS G0UT20/1-148        DE Uncharacterized protein TCIL3000_8_7630
#=GS G0UT20/1-148        DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Nannomonas; Trypanosoma congolense; 
#=GF SQ 25
P17545/521-674              NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVA
Q584K3/520-673              NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVA
Q57YU2/520-673              NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVA
Q4Q600/497-648              NKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKPRPLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQDT--
Q4DDX5/504-657              NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLKPRPLWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVA
G0ULQ7/521-674              NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAVLKPRPLWTGKQVFSLILPEVNHPTTPHDKPPFPHNDSSVMIRRGELLCGPITKGIVGAAPGSLIHVIFNEQGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVA
A0A1X0NJ78/511-664          NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFIQSVALWLDLWQLPIPAVLKPRPLWTGKQVFSLILPEVNHPATPQDKPPFPHNDSAIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVA
G0TZQ4/517-669              NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPYPLWTGKQVFSLILPEVNHPAVQQVKPPFPHNDSSVVIRRGQLLCGPITKGIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTYFLLNFGFSVGVQDTV-
A0A061J0Q4/504-657          NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAILKPRPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVA
A0A0N1J4B0/497-648          NKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPVPAILKPRPLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQDT--
A0A1G4I4P8/520-673          NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVA
A4HJP9/497-648              NKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKPRPLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGSITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRVTTYFNYCFAFSVGVQDT--
A0A0N0P4K4/497-648          NKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKPRPLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMIQRGLLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQDT--
Q26791/520-673              NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVA
C9ZMF2/520-673              NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVA
A0A3L6L8J1/520-673          NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVA
K2NKG9/504-657              NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLKPRPLWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVA
A4I766/497-648              NKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKPRPLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQDT--
A0A088SG91/497-648          NKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKPRPLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGSITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRVTTYFNYCFAFSVGVQDT--
E9B260/497-648              NKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKPRPLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQDT--
E9BN38/497-648              NKSAPCMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILKPRPLWTGKQIFSLILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEVAKFINGVQRITTYFNYCFAFSVGVQDT--
P17546/521-674              NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPRPLWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVA
V5B7G2/474-627              NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLRPRPLWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKSIVGAAPGSLIHVIFNERGSDEVARFINGVQRITTFYLINFGFSVGVQDTVA
Q8ISB0/504-657              NKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLKPRPLWTGKQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSDEVARFINGVQRITTFFLINFGFSVGVQDTVA
G0UT20/1-148                ------MGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAVLKPRPLWTGKQVFSLILPEVNHPTTPHDKPPFPHNDSSVMIRRGELLCGPITKGIVGAAPGSLIHVIFNEQGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVA
#=GC scorecons              7777779999999999999999999969999799999999996997997989899999997999999999998585779999999547896997995959996799999999999999969999997999999979978545969999999932
#=GC scorecons_70           *************************************************************************_*_*********__*********_*_****************************************___**********__
#=GC scorecons_80           **************************_****_**********_******************************_*_*_*******__***_*****_*_***_****************_**************_****___*_********__
#=GC scorecons_90           ______********************_****_**********_**_**_***********_************_*___*******___**_**_**_*_***__***************_******_*******_**_*___*_********__
//