# STOCKHOLM 1.0
#=GF ID 1.10.1740.10/FF/000025
#=GF DE ECF RNA polymerase sigma factor SigM
#=GF AC 1.10.1740.10/FF/000025
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 14.549
#=GS O53590/15-130      AC O53590
#=GS O53590/15-130      OS Mycobacterium tuberculosis H37Rv
#=GS O53590/15-130      DE ECF RNA polymerase sigma factor SigM
#=GS O53590/15-130      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS O53590/15-130      DR GO; GO:0005886; GO:0009410; GO:0009415; GO:0045893; 
#=GS A0A1X2LRP7/9-120   AC A0A1X2LRP7
#=GS A0A1X2LRP7/9-120   OS Mycobacterium decipiens
#=GS A0A1X2LRP7/9-120   DE RNA polymerase sigma factor SigM
#=GS A0A1X2LRP7/9-120   DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium decipiens; 
#=GS A0A120J3N8/15-130  AC A0A120J3N8
#=GS A0A120J3N8/15-130  OS Mycobacterium tuberculosis variant africanum
#=GS A0A120J3N8/15-130  DE ECF RNA polymerase sigma factor SigM
#=GS A0A120J3N8/15-130  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A5U9N9/15-130      AC A5U9N9
#=GS A5U9N9/15-130      OS Mycobacterium tuberculosis H37Ra
#=GS A5U9N9/15-130      DE RNA polymerase sigma-70 factor
#=GS A5U9N9/15-130      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A0G2PF27/15-130  AC A0A0G2PF27
#=GS A0A0G2PF27/15-130  OS Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2
#=GS A0A0G2PF27/15-130  DE Possible Alternative RNA polymerase sigma factor sigma [first part]
#=GS A0A0G2PF27/15-130  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A328H036/15-130  AC A0A328H036
#=GS A0A328H036/15-130  OS Mycobacterium tuberculosis variant pinnipedii
#=GS A0A328H036/15-130  DE ECF RNA polymerase sigma factor SigM
#=GS A0A328H036/15-130  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A045KCY9/15-130  AC A0A045KCY9
#=GS A0A045KCY9/15-130  OS Mycobacterium tuberculosis
#=GS A0A045KCY9/15-130  DE ECF RNA polymerase sigma factor SigM
#=GS A0A045KCY9/15-130  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A0K2I2Y3/15-130  AC A0A0K2I2Y3
#=GS A0A0K2I2Y3/15-130  OS Mycobacterium tuberculosis variant bovis BCG
#=GS A0A0K2I2Y3/15-130  DE ECF RNA polymerase sigma factor SigM
#=GS A0A0K2I2Y3/15-130  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS H8F2P4/16-130      AC H8F2P4
#=GS H8F2P4/16-130      OS Mycobacterium tuberculosis str. Erdman = ATCC 35801
#=GS H8F2P4/16-130      DE ECF RNA polymerase sigma factor SigM
#=GS H8F2P4/16-130      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS Q8VIQ8/16-130      AC Q8VIQ8
#=GS Q8VIQ8/16-130      OS Mycobacterium tuberculosis CDC1551
#=GS Q8VIQ8/16-130      DE RNA polymerase sigma-70 factor, ECF subfamily
#=GS Q8VIQ8/16-130      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A0E9A437/16-130  AC A0A0E9A437
#=GS A0A0E9A437/16-130  OS Mycobacterium tuberculosis
#=GS A0A0E9A437/16-130  DE RNA polymerase alternative sigma factor sigM
#=GS A0A0E9A437/16-130  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GF SQ 11
O53590/15-130              --GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA
A0A1X2LRP7/9-120           SGSRHERSDAELLAAHVAGDRHAFDQLFVRHHRQLHRLARLTSRTPEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRTNAAPTTPLEDVYPVADRTAQ------
A0A120J3N8/15-130          --GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA
A5U9N9/15-130              --GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA
A0A0G2PF27/15-130          --GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA
A0A328H036/15-130          --GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA
A0A045KCY9/15-130          --GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA
A0A0K2I2Y3/15-130          --GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA
H8F2P4/16-130              ---RHERSNAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA
Q8VIQ8/16-130              ---RHERSNAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA
A0A0E9A437/16-130          ---RHERSNAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIA
#=GC scorecons             0029999969999999999996999999499999999999999995999999999999999999999999999999999999999999999659499699999999999999333333
#=GC scorecons_70          ___*************************_****************_*********************************************__*_**_**************______
#=GC scorecons_80          ___*****_************_******_****************_*********************************************__*_**_**************______
#=GC scorecons_90          ___*****_************_******_****************_*********************************************__*_**_**************______
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