# STOCKHOLM 1.0
#=GF ID 1.10.1740.10/FF/000022
#=GF DE RNA polymerase sigma factor
#=GF AC 1.10.1740.10/FF/000022
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 16.212
#=GS P9WGG9/27-132      AC P9WGG9
#=GS P9WGG9/27-132      OS Mycobacterium tuberculosis H37Rv
#=GS P9WGG9/27-132      DE ECF RNA polymerase sigma factor SigD
#=GS P9WGG9/27-132      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS P9WGG9/27-132      DR GO; GO:0009405; GO:0009408; GO:0016987; 
#=GS A0A1X0DHZ6/6-111   AC A0A1X0DHZ6
#=GS A0A1X0DHZ6/6-111   OS Mycobacterium heidelbergense
#=GS A0A1X0DHZ6/6-111   DE RNA polymerase sigma factor
#=GS A0A1X0DHZ6/6-111   DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex; Mycobacterium heidelbergense; 
#=GS A0A2U3P417/5-112   AC A0A2U3P417
#=GS A0A2U3P417/5-112   OS Mycobacterium sp. AB215
#=GS A0A2U3P417/5-112   DE RNA polymerase sigma factor
#=GS A0A2U3P417/5-112   DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium sp. AB215; 
#=GS G0TIS5/27-132      AC G0TIS5
#=GS G0TIS5/27-132      OS Mycobacterium canettii CIPT 140010059
#=GS G0TIS5/27-132      DE RNA polymerase sigma factor
#=GS G0TIS5/27-132      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium canettii; 
#=GS A0A1Z4EE11/5-113   AC A0A1Z4EE11
#=GS A0A1Z4EE11/5-113   OS Mycobacterium shigaense
#=GS A0A1Z4EE11/5-113   DE RNA polymerase sigma factor
#=GS A0A1Z4EE11/5-113   DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium simiae complex; Mycobacterium shigaense; 
#=GS A0A045I7Y6/27-132  AC A0A045I7Y6
#=GS A0A045I7Y6/27-132  OS Mycobacterium tuberculosis
#=GS A0A045I7Y6/27-132  DE RNA polymerase sigma factor
#=GS A0A045I7Y6/27-132  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS P66812/27-132      AC P66812
#=GS P66812/27-132      OS Mycobacterium tuberculosis variant bovis AF2122/97
#=GS P66812/27-132      DE ECF RNA polymerase sigma factor SigD
#=GS P66812/27-132      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS P9WGG8/27-132      AC P9WGG8
#=GS P9WGG8/27-132      OS Mycobacterium tuberculosis CDC1551
#=GS P9WGG8/27-132      DE ECF RNA polymerase sigma factor SigD
#=GS P9WGG8/27-132      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A5U889/27-132      AC A5U889
#=GS A5U889/27-132      OS Mycobacterium tuberculosis H37Ra
#=GS A5U889/27-132      DE RNA polymerase sigma factor
#=GS A5U889/27-132      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A328G7K5/27-132  AC A0A328G7K5
#=GS A0A328G7K5/27-132  OS Mycobacterium tuberculosis variant pinnipedii
#=GS A0A328G7K5/27-132  DE RNA polymerase sigma factor
#=GS A0A328G7K5/27-132  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A0H3M932/27-132  AC A0A0H3M932
#=GS A0A0H3M932/27-132  OS Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2
#=GS A0A0H3M932/27-132  DE RNA polymerase sigma factor
#=GS A0A0H3M932/27-132  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS R4MLP2/5-109       AC R4MLP2
#=GS R4MLP2/5-109       OS Mycobacterium tuberculosis CAS/NITR204
#=GS R4MLP2/5-109       DE RNA polymerase sigma factor
#=GS R4MLP2/5-109       DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GF SQ 12
P9WGG9/27-132              -ER-LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERW-
A0A1X0DHZ6/6-111           -ER-LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVDRGGLSADDVAQEVCLATITALPRYRERGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETVPERW-
A0A2U3P417/5-112           AER-LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVDRGGLSADDVAQEVCLATLTALPRYKDRGRPFMAFLYGIAAHKVADAHRAAGRDLAFPAESVPERWS
G0TIS5/27-132              -ER-LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERW-
A0A1Z4EE11/5-113           AERPLDAVVADAVAGDRNALREVLETIRPIVVRYCRARVGTVDRGGLSADDVAQEVCLATLTALPRYKDRGRPFLAFLYGIAAHKVADAHRAAGRDLAFPAETVPERWS
A0A045I7Y6/27-132          -ER-LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERW-
P66812/27-132              -ER-LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERW-
P9WGG8/27-132              -ER-LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERW-
A5U889/27-132              -ER-LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERW-
A0A328G7K5/27-132          -ER-LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERW-
A0A0H3M932/27-132          -ER-LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERW-
R4MLP2/5-109               --R-LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERW-
#=GC scorecons             0790999999799999999999999999999999999999996959999999999999996999999689999979999999999999999999994979996699990
#=GC scorecons_70          _**_****************************************_***************************************************_******_****_
#=GC scorecons_80          _**_**************************************_*_***************_******_****************************_*****__****_
#=GC scorecons_90          __*_******_*******************************_*_***************_******_******_*********************_*_***__****_
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