# STOCKHOLM 1.0
#=GF ID 1.10.1740.10/FF/000014
#=GF DE RNA polymerase sigma factor
#=GF AC 1.10.1740.10/FF/000014
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 38.094
#=GS Q9I265/6-78      AC Q9I265
#=GS Q9I265/6-78      OS Pseudomonas aeruginosa PAO1
#=GS Q9I265/6-78      DE Probable sigma-70 factor, ECF subfamily
#=GS Q9I265/6-78      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS Q9I265/6-78      DR GO; GO:0005829; GO:0010959; GO:0016987; 
#=GS Q9I222/5-76      AC Q9I222
#=GS Q9I222/5-76      OS Pseudomonas aeruginosa PAO1
#=GS Q9I222/5-76      DE Probable sigma-70 factor, ECF subfamily
#=GS Q9I222/5-76      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS Q9I222/5-76      DR GO; GO:0005829; GO:0016987; GO:0034756; 
#=GS A0A157WP95/6-78  AC A0A157WP95
#=GS A0A157WP95/6-78  OS Enterobacter cloacae
#=GS A0A157WP95/6-78  DE RNA polymerase sigma factor, sigma-70 family
#=GS A0A157WP95/6-78  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter cloacae; 
#=GS A0A1G5IYX8/5-76  AC A0A1G5IYX8
#=GS A0A1G5IYX8/5-76  OS Acinetobacter baumannii
#=GS A0A1G5IYX8/5-76  DE Alternative RNAP sigma factor
#=GS A0A1G5IYX8/5-76  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter baumannii; 
#=GS A0A3S4N7Q3/5-76  AC A0A3S4N7Q3
#=GS A0A3S4N7Q3/5-76  OS Pseudomonas fluorescens
#=GS A0A3S4N7Q3/5-76  DE RNA polymerase sigma factor
#=GS A0A3S4N7Q3/5-76  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group; Pseudomonas fluorescens; 
#=GS A0A1F0IF25/5-76  AC A0A1F0IF25
#=GS A0A1F0IF25/5-76  OS Pseudomonas sp. HMSC065H01
#=GS A0A1F0IF25/5-76  DE RNA polymerase subunit sigma
#=GS A0A1F0IF25/5-76  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC065H01; 
#=GS A0A2V2TH91/5-76  AC A0A2V2TH91
#=GS A0A2V2TH91/5-76  OS Pseudomonas sp. RW410
#=GS A0A2V2TH91/5-76  DE RNA polymerase subunit sigma
#=GS A0A2V2TH91/5-76  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. RW410; 
#=GS A0A1S1C7H6/5-76  AC A0A1S1C7H6
#=GS A0A1S1C7H6/5-76  OS Pseudomonas sp. HMSC059F05
#=GS A0A1S1C7H6/5-76  DE RNA polymerase subunit sigma
#=GS A0A1S1C7H6/5-76  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC059F05; 
#=GS A0A0H2ZAH0/6-78  AC A0A0H2ZAH0
#=GS A0A0H2ZAH0/6-78  OS Pseudomonas aeruginosa UCBPP-PA14
#=GS A0A0H2ZAH0/6-78  DE Putative sigma-70 factor, ECF subfamily
#=GS A0A0H2ZAH0/6-78  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A425A4Z4/6-78  AC A0A425A4Z4
#=GS A0A425A4Z4/6-78  OS Pseudomonas aeruginosa
#=GS A0A425A4Z4/6-78  DE RNA polymerase subunit sigma
#=GS A0A425A4Z4/6-78  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A0H2Z9E3/5-76  AC A0A0H2Z9E3
#=GS A0A0H2Z9E3/5-76  OS Pseudomonas aeruginosa UCBPP-PA14
#=GS A0A0H2Z9E3/5-76  DE Putative sigma-70 factor, ECF subfamily
#=GS A0A0H2Z9E3/5-76  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A069Q803/5-76  AC A0A069Q803
#=GS A0A069Q803/5-76  OS Pseudomonas aeruginosa
#=GS A0A069Q803/5-76  DE Putative RNA polymerase sigma factor FecI
#=GS A0A069Q803/5-76  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS W1MRX0/5-76      AC W1MRX0
#=GS W1MRX0/5-76      OS Pseudomonas aeruginosa VRFPA03
#=GS W1MRX0/5-76      DE RNA polymerase sigma factor
#=GS W1MRX0/5-76      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS V6AFH4/5-76      AC V6AFH4
#=GS V6AFH4/5-76      OS Pseudomonas aeruginosa MH27
#=GS V6AFH4/5-76      DE RNA polymerase sigma factor
#=GS V6AFH4/5-76      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A1C7BKF2/5-76  AC A0A1C7BKF2
#=GS A0A1C7BKF2/5-76  OS Pseudomonas aeruginosa BL04
#=GS A0A1C7BKF2/5-76  DE RNA polymerase sigma factor
#=GS A0A1C7BKF2/5-76  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A157WQT8/5-76  AC A0A157WQT8
#=GS A0A157WQT8/5-76  OS Enterobacter cloacae
#=GS A0A157WQT8/5-76  DE RNA polymerase sigma factor, sigma-70 family
#=GS A0A157WQT8/5-76  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex; Enterobacter cloacae; 
#=GF SQ 16
Q9I265/6-78              --TRNRLVGLMFQNDYSWLSGRLRRYLGCPHSAEDIASETFLKVLALPDPASIREPRALLTTIARRLMYDGWRRQ
Q9I222/5-76              GSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPRAFLATIAQRLMYESW---
A0A157WP95/6-78          --TRNRLVGLMFQNDYSWLSGRLRRYLGCPHSAEDIASETFLKVLALPDPASIREPRALLTTIARRLMYDGWRRQ
A0A1G5IYX8/5-76          GSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPRAFLATIAQRLMYESW---
A0A3S4N7Q3/5-76          GSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPRAFLATIAQRLMYESW---
A0A1F0IF25/5-76          GSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPRAFLATIAQRLMYESW---
A0A2V2TH91/5-76          GSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPRAFLATIAQRLMYESW---
A0A1S1C7H6/5-76          GSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPRAFLATIAQRLMYESW---
A0A0H2ZAH0/6-78          --TRNRLVGLMFQNDYSWLSGRLRRYLGCPHSAEDIASETFLKVLALPDPASIREPRALLTTIARRLMYDGWRRQ
A0A425A4Z4/6-78          --TRNRLVGLMFQNDYSWLSGRLRRYLGCPHSAEDIASETFLKVLALPDPASIREPRALLTTIARRLMYDGWRRQ
A0A0H2Z9E3/5-76          GSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPRAFLATIAQRLMYESW---
A0A069Q803/5-76          GSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPRAFLATIAQRLMYESW---
W1MRX0/5-76              GSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPRAFLATIAQRLMYESW---
V6AFH4/5-76              GSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPRAFLATIAQRLMYESW---
A0A1C7BKF2/5-76          GSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPRAFLATIAQRLMYESW---
A0A157WQT8/5-76          GSIKNTLIAQLFQQNYDWLCKKLSYQTGCSHSAEDLAAEAFLQVWMLPDPASIRSPRAFLATIAQRLMYESW---
#=GC scorecons           226795976569956959965795555996999996969699695599999999599969699969999769111
#=GC scorecons_70        ___**_**__***_**_**__**____**_*******_******__********_***************_*___
#=GC scorecons_80        ____*_*____**__*_**___*____**_*****_*_*_**_*__********_***_*_***_****__*___
#=GC scorecons_90        ____*_*____**__*_**___*____**_*****_*_*_**_*__********_***_*_***_****__*___
//