# STOCKHOLM 1.0
#=GF ID 1.10.1740.10/FF/000012
#=GF DE RNA polymerase sigma factor
#=GF AC 1.10.1740.10/FF/000012
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 13.674
#=GS G3XDC4/18-116      AC G3XDC4
#=GS G3XDC4/18-116      OS Pseudomonas syringae pv. tomato str. DC3000
#=GS G3XDC4/18-116      DE RNA polymerase sigma factor
#=GS G3XDC4/18-116      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 3; 
#=GS G3XDC4/18-116      DR GO; GO:0045893; 
#=GS A0A326TJA1/15-118  AC A0A326TJA1
#=GS A0A326TJA1/15-118  OS Pseudomonas sp. NP10-3
#=GS A0A326TJA1/15-118  DE RNA polymerase sigma factor
#=GS A0A326TJA1/15-118  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. NP10-3; 
#=GS Q7DK50/15-118      AC Q7DK50
#=GS Q7DK50/15-118      OS Pseudomonas syringae pv. pisi
#=GS Q7DK50/15-118      DE RNA polymerase sigma factor
#=GS Q7DK50/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS A0A3M5YEA3/15-118  AC A0A3M5YEA3
#=GS A0A3M5YEA3/15-118  OS Pseudomonas savastanoi pv. phaseolicola
#=GS A0A3M5YEA3/15-118  DE RNA polymerase sigma factor
#=GS A0A3M5YEA3/15-118  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 2; Pseudomonas savastanoi; 
#=GS Q2HPJ6/15-118      AC Q2HPJ6
#=GS Q2HPJ6/15-118      OS Pseudomonas syringae pv. coryli
#=GS Q2HPJ6/15-118      DE RNA polymerase sigma factor
#=GS Q2HPJ6/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 2; Pseudomonas syringae pv. coryli; 
#=GS F3G212/15-118      AC F3G212
#=GS F3G212/15-118      OS Pseudomonas syringae pv. pisi str. 1704B
#=GS F3G212/15-118      DE RNA polymerase sigma factor
#=GS F3G212/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS A0A3M5WIY9/15-118  AC A0A3M5WIY9
#=GS A0A3M5WIY9/15-118  OS Pseudomonas syringae pv. aptata
#=GS A0A3M5WIY9/15-118  DE RNA polymerase sigma factor
#=GS A0A3M5WIY9/15-118  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS Q7DK40/15-118      AC Q7DK40
#=GS Q7DK40/15-118      OS Pseudomonas syringae pv. syringae
#=GS Q7DK40/15-118      DE RNA polymerase sigma factor
#=GS Q7DK40/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS P96978/15-118      AC P96978
#=GS P96978/15-118      OS Pseudomonas syringae
#=GS P96978/15-118      DE RNA polymerase sigma factor
#=GS P96978/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS Q9Z3T7/15-118      AC Q9Z3T7
#=GS Q9Z3T7/15-118      OS Pseudomonas syringae pv. pisi
#=GS Q9Z3T7/15-118      DE RNA polymerase sigma factor
#=GS Q9Z3T7/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS Q2UZV3/15-118      AC Q2UZV3
#=GS Q2UZV3/15-118      OS Pseudomonas syringae pv. papulans
#=GS Q2UZV3/15-118      DE RNA polymerase sigma factor
#=GS Q2UZV3/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS A0A3M5X3R8/15-118  AC A0A3M5X3R8
#=GS A0A3M5X3R8/15-118  OS Pseudomonas syringae pv. apii
#=GS A0A3M5X3R8/15-118  DE RNA polymerase sigma factor
#=GS A0A3M5X3R8/15-118  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 3; 
#=GS Q2UZV4/15-118      AC Q2UZV4
#=GS Q2UZV4/15-118      OS Pseudomonas syringae pv. atrofaciens
#=GS Q2UZV4/15-118      DE RNA polymerase sigma factor
#=GS Q2UZV4/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS Q2UZV6/15-118      AC Q2UZV6
#=GS Q2UZV6/15-118      OS Pseudomonas syringae pv. panici
#=GS Q2UZV6/15-118      DE RNA polymerase sigma factor
#=GS Q2UZV6/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS F3FD62/15-118      AC F3FD62
#=GS F3FD62/15-118      OS Pseudomonas syringae pv. japonica str. M301072
#=GS F3FD62/15-118      DE RNA polymerase sigma factor
#=GS F3FD62/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS Q7DK43/15-118      AC Q7DK43
#=GS Q7DK43/15-118      OS Pseudomonas syringae pv. syringae
#=GS Q7DK43/15-118      DE RNA polymerase sigma factor
#=GS Q7DK43/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS Q7DK86/15-118      AC Q7DK86
#=GS Q7DK86/15-118      OS Pseudomonas syringae
#=GS Q7DK86/15-118      DE RNA polymerase sigma factor
#=GS Q7DK86/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS Q2UZV5/15-118      AC Q2UZV5
#=GS Q2UZV5/15-118      OS Pseudomonas syringae pv. japonica
#=GS Q2UZV5/15-118      DE RNA polymerase sigma factor
#=GS Q2UZV5/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS S3MU48/15-118      AC S3MU48
#=GS S3MU48/15-118      OS Pseudomonas syringae pv. syringae SM
#=GS S3MU48/15-118      DE RNA polymerase sigma factor
#=GS S3MU48/15-118      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1; Pseudomonas syringae; 
#=GS Q9WWI6/18-116      AC Q9WWI6
#=GS Q9WWI6/18-116      OS Pseudomonas syringae pv. tomato
#=GS Q9WWI6/18-116      DE RNA polymerase sigma factor
#=GS Q9WWI6/18-116      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 3; 
#=GF SQ 20
G3XDC4/18-116              ---SSAGIRQMTADQIQMLRAFIQKRVMNPDDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHSELEGHGDVSHQ--
A0A326TJA1/15-118          QPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
Q7DK50/15-118              QPSSSAGIRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
A0A3M5YEA3/15-118          QPSSSAGIRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
Q2HPJ6/15-118              QPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
F3G212/15-118              QPSSSAGIRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
A0A3M5WIY9/15-118          QPSSSAGIRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
Q7DK40/15-118              QPSSSAGIRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
P96978/15-118              QPSSSAGIRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
Q9Z3T7/15-118              QPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
Q2UZV3/15-118              QPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
A0A3M5X3R8/15-118          QPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
Q2UZV4/15-118              QPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
Q2UZV6/15-118              QPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
F3FD62/15-118              QPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
Q7DK43/15-118              QPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
Q7DK86/15-118              QPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
Q2UZV5/15-118              QPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
S3MU48/15-118              QPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLESNGDITHQVD
Q9WWI6/18-116              ---SSAGIRQMTADQIQMLRAFIQKRVMNPDDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHSELEGHGDVSHQ--
#=GC scorecons             22299999996999979999999999949599999999999999999999999999999999999999999999999999999999999956995599659922
#=GC scorecons_70          ___************************_*_************************************************************_***__***_**__
#=GC scorecons_80          ___*******_****_***********_*_************************************************************__**__**__**__
#=GC scorecons_90          ___*******_****_***********_*_************************************************************__**__**__**__
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