# STOCKHOLM 1.0
#=GF ID 1.10.1740.10/FF/000011
#=GF DE RNA polymerase sigma factor rpoD
#=GF AC 1.10.1740.10/FF/000011
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 16.692
#=GS Q84JN3/258-335      AC Q84JN3
#=GS Q84JN3/258-335      OS Oryza sativa Japonica Group
#=GS Q84JN3/258-335      DE Os05g0586600 protein
#=GS Q84JN3/258-335      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS Q84JN3/258-335      DR GO; GO:0003899; GO:0009536; GO:0016987; 
#=GS A0A2T7E9P7/246-323  AC A0A2T7E9P7
#=GS A0A2T7E9P7/246-323  OS Panicum hallii var. hallii
#=GS A0A2T7E9P7/246-323  DE Uncharacterized protein
#=GS A0A2T7E9P7/246-323  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum; Panicum hallii; Panicum hallii var. hallii; 
#=GS A0A3B5Y7K5/253-329  AC A0A3B5Y7K5
#=GS A0A3B5Y7K5/253-329  OS Triticum aestivum
#=GS A0A3B5Y7K5/253-329  DE Uncharacterized protein
#=GS A0A3B5Y7K5/253-329  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; 
#=GS C5YWL3/258-335      AC C5YWL3
#=GS C5YWL3/258-335      OS Sorghum bicolor
#=GS C5YWL3/258-335      DE Uncharacterized protein
#=GS C5YWL3/258-335      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; 
#=GS K3Z5T6/242-319      AC K3Z5T6
#=GS K3Z5T6/242-319      OS Setaria italica
#=GS K3Z5T6/242-319      DE Uncharacterized protein
#=GS K3Z5T6/242-319      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; 
#=GS A0A0D9WKC7/249-326  AC A0A0D9WKC7
#=GS A0A0D9WKC7/249-326  OS Leersia perrieri
#=GS A0A0D9WKC7/249-326  DE Uncharacterized protein
#=GS A0A0D9WKC7/249-326  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; 
#=GS A0A453A230/253-329  AC A0A453A230
#=GS A0A453A230/253-329  OS Aegilops tauschii subsp. strangulata
#=GS A0A453A230/253-329  DE Uncharacterized protein
#=GS A0A453A230/253-329  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Aegilops; Aegilops tauschii; Aegilops tauschii subsp. strangulata; 
#=GS I1PYE3/258-335      AC I1PYE3
#=GS I1PYE3/258-335      OS Oryza glaberrima
#=GS I1PYE3/258-335      DE Uncharacterized protein
#=GS I1PYE3/258-335      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; 
#=GS A0A0E0PRV9/258-335  AC A0A0E0PRV9
#=GS A0A0E0PRV9/258-335  OS Oryza rufipogon
#=GS A0A0E0PRV9/258-335  DE Uncharacterized protein
#=GS A0A0E0PRV9/258-335  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; 
#=GS A0A0E0L6C4/255-332  AC A0A0E0L6C4
#=GS A0A0E0L6C4/255-332  OS Oryza punctata
#=GS A0A0E0L6C4/255-332  DE Uncharacterized protein
#=GS A0A0E0L6C4/255-332  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza punctata; 
#=GS A0A3L6T1H4/247-324  AC A0A3L6T1H4
#=GS A0A3L6T1H4/247-324  OS Panicum miliaceum
#=GS A0A3L6T1H4/247-324  DE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
#=GS A0A3L6T1H4/247-324  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum miliaceum; 
#=GS A0A0E0A3F4/258-335  AC A0A0E0A3F4
#=GS A0A0E0A3F4/258-335  OS Oryza glumipatula
#=GS A0A0E0A3F4/258-335  DE Uncharacterized protein
#=GS A0A0E0A3F4/258-335  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; 
#=GS A0A0E0DV10/259-336  AC A0A0E0DV10
#=GS A0A0E0DV10/259-336  OS Oryza meridionalis
#=GS A0A0E0DV10/259-336  DE Uncharacterized protein
#=GS A0A0E0DV10/259-336  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; 
#=GS J3MA78/495-572      AC J3MA78
#=GS J3MA78/495-572      OS Oryza brachyantha
#=GS J3MA78/495-572      DE Uncharacterized protein
#=GS J3MA78/495-572      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza brachyantha; 
#=GS A0A0D3GBE7/258-335  AC A0A0D3GBE7
#=GS A0A0D3GBE7/258-335  OS Oryza barthii
#=GS A0A0D3GBE7/258-335  DE Uncharacterized protein
#=GS A0A0D3GBE7/258-335  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; 
#=GS M8A035/177-253      AC M8A035
#=GS M8A035/177-253      OS Triticum urartu
#=GS M8A035/177-253      DE RNA polymerase sigma factor rpoD
#=GS M8A035/177-253      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum urartu; 
#=GS A0A446JE99/253-329  AC A0A446JE99
#=GS A0A446JE99/253-329  OS Triticum turgidum subsp. durum
#=GS A0A446JE99/253-329  DE Uncharacterized protein
#=GS A0A446JE99/253-329  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum turgidum; Triticum turgidum subsp. durum; 
#=GS A0A0E0HJ42/258-335  AC A0A0E0HJ42
#=GS A0A0E0HJ42/258-335  OS Oryza sativa f. spontanea
#=GS A0A0E0HJ42/258-335  DE Uncharacterized protein
#=GS A0A0E0HJ42/258-335  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; 
#=GS A0A2S3H970/246-323  AC A0A2S3H970
#=GS A0A2S3H970/246-323  OS Panicum hallii
#=GS A0A2S3H970/246-323  DE Uncharacterized protein
#=GS A0A2S3H970/246-323  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum; Panicum hallii; 
#=GS A2Y810/258-335      AC A2Y810
#=GS A2Y810/258-335      OS Oryza sativa Indica Group
#=GS A2Y810/258-335      DE Uncharacterized protein
#=GS A2Y810/258-335      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS A0A3L6R6J0/247-323  AC A0A3L6R6J0
#=GS A0A3L6R6J0/247-323  OS Panicum miliaceum
#=GS A0A3L6R6J0/247-323  DE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
#=GS A0A3L6R6J0/247-323  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum miliaceum; 
#=GS A0A0E0DV11/259-336  AC A0A0E0DV11
#=GS A0A0E0DV11/259-336  OS Oryza meridionalis
#=GS A0A0E0DV11/259-336  DE Uncharacterized protein
#=GS A0A0E0DV11/259-336  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; 
#=GS A0A3B6A3M2/253-329  AC A0A3B6A3M2
#=GS A0A3B6A3M2/253-329  OS Triticum aestivum
#=GS A0A3B6A3M2/253-329  DE Uncharacterized protein
#=GS A0A3B6A3M2/253-329  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; 
#=GS A0A3B5Z6C4/251-327  AC A0A3B5Z6C4
#=GS A0A3B5Z6C4/251-327  OS Triticum aestivum
#=GS A0A3B5Z6C4/251-327  DE Uncharacterized protein
#=GS A0A3B5Z6C4/251-327  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Triticum; Triticum aestivum; 
#=GS A0A453A247/115-191  AC A0A453A247
#=GS A0A453A247/115-191  OS Aegilops tauschii subsp. strangulata
#=GS A0A453A247/115-191  DE Uncharacterized protein
#=GS A0A453A247/115-191  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Triticeae; Triticinae; Aegilops; Aegilops tauschii; Aegilops tauschii subsp. strangulata; 
#=GF SQ 25
Q84JN3/258-335              EVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAIT
A0A2T7E9P7/246-323          DVGRAARNKLIKHNLRLVLYAINKYYPDMASDERFDDLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAMT
A0A3B5Y7K5/253-329          -VGRAARNKLIKHNLRLVLYAINKYYPDMTGDERFADLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSVVRAMT
C5YWL3/258-335              DVGRAARNKLIKHNLRLVPYAINKYYPDMGTDERFDDLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAMT
K3Z5T6/242-319              DVGRAARNKVIKHNLRLVLYAINKYYPDMANDERFDDLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAMT
A0A0D9WKC7/249-326          EVGRAARNKLIKHNLRLVLYTINKYYPDMTSDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAMT
A0A453A230/253-329          -VGRAARNKLIKHNLRLVLYAINKYYPDMTGDERFADLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSVVRAMT
I1PYE3/258-335              EVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAIT
A0A0E0PRV9/258-335          EVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAIT
A0A0E0L6C4/255-332          EVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAIT
A0A3L6T1H4/247-324          DVGRAARNKLIKHNLRLVLYAINKYYPDMASDERFDDLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAMT
A0A0E0A3F4/258-335          EVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAIT
A0A0E0DV10/259-336          EVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAIT
J3MA78/495-572              EVGRAARNKLIKHNLRLVLYTINKYYPDMANDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAMT
A0A0D3GBE7/258-335          EVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAIT
M8A035/177-253              -VGRAARNKLIKHNLRLVLYAINKYYPDMTGDERFADLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSVVRAMT
A0A446JE99/253-329          -VGRAARNKLIKHNLRLVLYAINKYYPDMTGDERFADLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSVVRAMT
A0A0E0HJ42/258-335          EVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAIT
A0A2S3H970/246-323          DVGRAARNKLIKHNLRLVLYAINKYYPDMASDERFDDLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAMT
A2Y810/258-335              EVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAIT
A0A3L6R6J0/247-323          -VGRATRNKLIKHNLRLVLYAINKYYPDMASDERFDDLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAMT
A0A0E0DV11/259-336          EVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAIT
A0A3B6A3M2/253-329          -VGRAARNKLIKHNLRLVLYAINKYYPDMTGDERFADLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSVVRAMT
A0A3B5Z6C4/251-327          -VGRAARNKLIKHNLRLVLYAINKYYPDMTGDERFADLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSVVRAMT
A0A453A247/115-191          -VGRAARNKLIKHNLRLVLYAINKYYPDMTGDERFADLCQAGANGLITAIDRFEPKRGFRISTYALFWIRHSVVRAMT
#=GC scorecons              299998999899999999896999999995599995969999999999999999999999999999999999799979
#=GC scorecons_70           _****************************__****_******************************************
#=GC scorecons_80           _*******************_********__****_*_**************************************_*
#=GC scorecons_90           _*******************_********__****_*_**********************************_***_*
//