# STOCKHOLM 1.0
#=GF ID 1.10.150.20/FF/000082
#=GF DE DNA-directed RNA polymerase, mitochondrial
#=GF AC 1.10.150.20/FF/000082
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 79.711
#=GS Q95WT2/975-1174       AC Q95WT2
#=GS Q95WT2/975-1174       OS Trypanosoma brucei
#=GS Q95WT2/975-1174       DE RNA polymerase
#=GS Q95WT2/975-1174       DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; 
#=GS Q95WT2/975-1174       DR GO; GO:0001065; GO:0003677; GO:0003899; GO:0005737; GO:0005739; GO:0006264; GO:0006351; GO:0006390; GO:0097014; 
#=GS Q4QAL7/1210-1409      AC Q4QAL7
#=GS Q4QAL7/1210-1409      OS Leishmania major
#=GS Q4QAL7/1210-1409      DE Putative mitochondrial DNA-directed RNA polymerase
#=GS Q4QAL7/1210-1409      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania major species complex; Leishmania major; 
#=GS Q4QAL7/1210-1409      DR GO; GO:0001065; GO:0005737; GO:0006264; GO:0006390; GO:0097014; 
#=GS A9V1Q0/536-734        AC A9V1Q0
#=GS A9V1Q0/536-734        OS Monosiga brevicollis
#=GS A9V1Q0/536-734        DE DNA-directed RNA polymerase
#=GS A9V1Q0/536-734        DR ORG; Eukaryota; Choanoflagellida; Salpingoecidae; Monosiga; Monosiga brevicollis; 
#=GS I1JWD0/266-454        AC I1JWD0
#=GS I1JWD0/266-454        OS Glycine max
#=GS I1JWD0/266-454        DE DNA-directed RNA polymerase
#=GS I1JWD0/266-454        DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS H3HE68/677-905        AC H3HE68
#=GS H3HE68/677-905        OS Phytophthora ramorum
#=GS H3HE68/677-905        DE Uncharacterized protein
#=GS H3HE68/677-905        DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora ramorum; 
#=GS A0A0M9FZ79/1017-1216  AC A0A0M9FZ79
#=GS A0A0M9FZ79/1017-1216  OS Leptomonas pyrrhocoris
#=GS A0A0M9FZ79/1017-1216  DE Putative mitochondrial mitochondrial DNA-directed RNA polymerase
#=GS A0A0M9FZ79/1017-1216  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leptomonas; Leptomonas pyrrhocoris; 
#=GS F9WCU6/979-1178       AC F9WCU6
#=GS F9WCU6/979-1178       OS Trypanosoma congolense IL3000
#=GS F9WCU6/979-1178       DE Uncharacterized protein TCIL3000_11_6160
#=GS F9WCU6/979-1178       DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Nannomonas; Trypanosoma congolense; 
#=GS A4HDH2/1000-1199      AC A4HDH2
#=GS A4HDH2/1000-1199      OS Leishmania braziliensis
#=GS A4HDH2/1000-1199      DE Putative mitochondrial DNA-directed RNA polymerase
#=GS A4HDH2/1000-1199      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania braziliensis species complex; Leishmania braziliensis; 
#=GS A0A1G4I3F7/975-1174   AC A0A1G4I3F7
#=GS A0A1G4I3F7/975-1174   OS Trypanosoma equiperdum
#=GS A0A1G4I3F7/975-1174   DE DNA-directed RNA polymerase, mitochondrial
#=GS A0A1G4I3F7/975-1174   DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma equiperdum; 
#=GS Q385J0/975-1174       AC Q385J0
#=GS Q385J0/975-1174       OS Trypanosoma brucei brucei TREU927
#=GS Q385J0/975-1174       DE Mitochondrial DNA-directed RNA polymerase
#=GS Q385J0/975-1174       DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q385J0/975-1174       DR GO; GO:0001065; GO:0003677; GO:0003899; GO:0005737; GO:0005739; GO:0006264; GO:0006351; GO:0006390; GO:0097014; 
#=GS A4I0V3/1211-1410      AC A4I0V3
#=GS A4I0V3/1211-1410      OS Leishmania infantum
#=GS A4I0V3/1211-1410      DE DNA-directed_RNA_polymerase_-_mitochondrial
#=GS A4I0V3/1211-1410      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania infantum; 
#=GS E9AWV7/1212-1411      AC E9AWV7
#=GS E9AWV7/1212-1411      OS Leishmania mexicana MHOM/GT/2001/U1103
#=GS E9AWV7/1212-1411      DE Mitochondrial DNA-directed RNA polymerase,putative
#=GS E9AWV7/1212-1411      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania mexicana species complex; Leishmania mexicana; 
#=GS A0A088RRM0/1000-1199  AC A0A088RRM0
#=GS A0A088RRM0/1000-1199  OS Leishmania panamensis
#=GS A0A088RRM0/1000-1199  DE Mitochondrial DNA-directed RNA polymerase, putative
#=GS A0A088RRM0/1000-1199  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania guyanensis species complex; Leishmania panamensis; 
#=GS A0A3L6KSI5/975-1174   AC A0A3L6KSI5
#=GS A0A3L6KSI5/975-1174   OS Trypanosoma brucei equiperdum
#=GS A0A3L6KSI5/975-1174   DE DNA-directed RNA polymerase
#=GS A0A3L6KSI5/975-1174   DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei equiperdum; 
#=GS E9BGY1/1211-1410      AC E9BGY1
#=GS E9BGY1/1211-1410      OS Leishmania donovani BPK282A1
#=GS E9BGY1/1211-1410      DE Mitochondrial DNA-directed RNA polymerase, putative
#=GS E9BGY1/1211-1410      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania donovani species complex; Leishmania donovani; 
#=GS A0A1E1IXH6/1118-1317  AC A0A1E1IXH6
#=GS A0A1E1IXH6/1118-1317  OS Leishmania guyanensis
#=GS A0A1E1IXH6/1118-1317  DE Mitochondrial DNA-directed RNA polymerase,putative
#=GS A0A1E1IXH6/1118-1317  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Viannia; Leishmania guyanensis species complex; Leishmania guyanensis; 
#=GS A0A0B2QUZ4/570-758    AC A0A0B2QUZ4
#=GS A0A0B2QUZ4/570-758    OS Glycine soja
#=GS A0A0B2QUZ4/570-758    DE DNA-directed RNA polymerase
#=GS A0A0B2QUZ4/570-758    DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; 
#=GF SQ 17
Q95WT2/975-1174               FGATLVNLVPS---ERPADAYTGILKEMMSSIKADAERD--------------------------------------HQWLQRCLGTGKGQDRDHIKRKTIKRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMRE----MADYLREKVLESLGITFRETQNCRRWITDVSNIIWEVQPAELRTALCWTTPLGLVVRQPYKMRKEMMIFTVHG-CARVPANA--FSAASRKQLTAIAPNLIH
Q4QAL7/1210-1409              FGAKLVNLVPS---ERPADAYTGILKEMLKSICIDADRD--------------------------------------HQVAQRCLGTGRGQDKDHIKRKTIKRPIMTQVYGVTSYGMSEQIFDELVKQNKSHGLWTHTDMKE----MAAYLRDKVLESLGITFRETQNCRKWISEVTTLLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLFTPHG-YSRVPGDS--VAPASRKQLTAIAPNLIH
A9V1Q0/536-734                AGARHVNVIPTPEDDRPQDVYSAVAAKVDELLHMQATTG------------------NFEHFPREVK-----DPERYKQLARLLMEQG------PMKRKIVKQTVMTNVYGVTYIGGRDQILRQLKA----HDYVPDALMKD----CASYLTLL-------IFVNAQKIQKWLSRQARMI-----ASSGEPVSWVTPLGLPIIQPYHMAAKRQITTSLQSVMTTVTTSPIKPPNVVKQSSAFPPNFVH
I1JWD0/266-454                -EAAAVNLVAK---EKPADVYTEIAVRVYDIMRRDSNKD--------------PDTFPNAL------------------LAKVLLG--------QIDRKLVKQTVMTSVYGVTYIGAREQIKRRLGE----KGLITDDRL---LYAASCYAAKVTLAALGEVFEAARGIMGWLGDCAKVI-----ACENQAVRWTTPLGLPVVQPYCKTERYQIRTSLQ-LLALQREG--SAVSVKKQRSAFPPNFVH
H3HE68/677-905                -GGEQVNLVPA---PRPSDVYMGVATQVMAKVEHDAEVDLPSVEEVRAMIADVPDDNSQESLSRKTKLRTLLDQAQRKKNAQFLHG--------IITRKVVKQTVMTSVYGVTYIGARKQISARLHETFLTKGHIMDEKLEDDIYHASCYCAELTMGSMGDLFNSARSIMAWLAKCAAKV-----GESGQPMSWITPLGLPVVQPYRSKSTKQVRTKVQHVLMVDNEG--RPVSIGRQKSAFPPNFVH
A0A0M9FZ79/1017-1216          FGAALVNLVPS---ERPADAYTGILKEMLKSIVADAARD--------------------------------------HQVAQRCLGTGKGQDKDHIKRKTIKRPIMTQVYGVTAFGMSEQIFDELQKQNKSHGLWTHTDMKE----MAAYLRDKVLESLGVTFRETQNCRRWISEVVQLIWKVQPPELRNALCWTTPLGLVVRQPYKVRNECSLFTTSG-YARIPGDS--IAPASRKQLTAIAPNLIH
F9WCU6/979-1178               FGATLVNLVPS---ERPADAYTGILKEMMSSITADANRD--------------------------------------HPVAQRCLGTGKGQDRDHIKRKTIKRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMRE----MADYLREKVLESLGITFRETQNCRRWITDVTNIIWEVQPAELRTALCWTTPLGLVVRQPYKMNKEMLIFTVHG-CARVPGNA--FSAASRKQLTAIAPNLIH
A4HDH2/1000-1199              FGAKLVNLVPS---ERPADAYTGILKEMLKSICIDADRD--------------------------------------HQVAQRCLGTGRGQDKDHIKRKTIKRPIMTQVYGVTSYGMSEQILDELVKQNKSHGLWTHTDMKE----MAAYLRDKVLESLGVTFRETQNCRRWISEVAALLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLFTPHG-YSRVPGDS--VAPASRKQLTAIAPNLIH
A0A1G4I3F7/975-1174           FGATLVNLVPS---ERPADAYTGILKEMMSSIKADAERD--------------------------------------HPVAQRCLGTGKGQDRDHIKRKTIKRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMRE----MADYLREKVLESLGITFRETQNCRRWITDVTNIIWEVQPAELRTALCWTTPLGLVVRQPYKMRKEMMIFTVHG-CARVPANA--FSAASRKQLTAIAPNLIH
Q385J0/975-1174               FGATLVNLVPS---ERPADAYTGILKEMMSSIKADAERD--------------------------------------HPVAQRCLGTGKGQDRDHIKRKTIKRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMRE----MADYLREKVLESLGITFRETQNCRRWITDVTNIIWEVQPAELRTALCWTTPLGLVVRQPYKMRKEMMIFTVHG-CARVPANA--FSAASRKQLTAIAPNLIH
A4I0V3/1211-1410              FGAKLVNLVPS---ERPADAYTGILKEMLKSICIDAGRD--------------------------------------HQVAQRCLGTGRGQDKDHIKRKTIKRPIMTQVYGVTSYGMSEQIFDELVKQNKSHGLWTHTDMKE----MAAYLRDKVLESLGITFRETQNCRKWISEVTTLLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLFTPHG-YSRVPGDS--VAPASRKQLTAIAPNLIH
E9AWV7/1212-1411              FGAKLVNLVPS---ERPADAYTGILKEMLKSICIDADRD--------------------------------------HQVAQRCLGTGRGQDKDHIKRKTIKRPIMTQVYGVTGYGMSEQIFDELVKQNKSHGLWTHTDMKE----MAAYLRDKVLESLGITFRETQNCRKWISEVTTLLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLFTPHG-YSRIPGDS--VAPASRKQLTAIAPNLIH
A0A088RRM0/1000-1199          FGAKLVNLVPS---ERPADAYTGILKEMLKSICIDADRD--------------------------------------HQVAQRCLGTGRGQDKDHIKRKTIKRPIMTQVYGVTSYGMSEQILDELVKQNKSHGLWTHTDMKE----MAAYLRDKVLESLGVTFRETQNCRRWISEVAALLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLFTPHG-YSRVPGDS--VAPASRKQLTAIAPNLIH
A0A3L6KSI5/975-1174           FGATLVNLVPS---ERPADAYTGILKEMMSSIKADAERD--------------------------------------HPVAQRCLGTGKGQDRDHIKRKTIKRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMRE----MADYLREKVLESLGITFRETQNCRRWITDVTNIIWEVQPAELRTALCWTTPLGLVVRQPYKMRKEMMIFTVHG-CARVPANA--FSAASRKQLTAIAPNLIH
E9BGY1/1211-1410              FGAKLVNLVPS---ERPADAYTGILKEMLKSICIDAGRD--------------------------------------HQVAQRCLGTGRGQDKDHIKRKTIKRPIMTQVYGVTSYGMSEQIFDELVKQNKSHGLWTHTDMKE----MAAYLRDKVLESLGITFRETQNCRKWISEVTTLLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLFTPHG-YSRVPGDS--VAPASRKQLTAIAPNLIH
A0A1E1IXH6/1118-1317          FGAKLVNLVPS---ERPADAYTGILKEMLKSICIDADRD--------------------------------------HQVAQRCLGTGRGQDKDHIKRKTIKRPIMTQVYGVTSYGMSEQILDELVKQNKSHGLWTHTDMKE----MAAYLRDKVLESLGVTFRETQNCRRWISEVAALLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLFTPHG-YSRVPGDS--VAPASRKQLTAIAPNLIH
A0A0B2QUZ4/570-758            -EAAAVNLVAK---EKPADVYTEIAVRVYDIMRRDSNKD--------------PDTFPNAL------------------LAKVLLG--------QIDRKLVKQTVMTSVYGVTYIGAREQIKRRLGE----KGLITDDRL---LYAASCYAAKVTLAALGEVFEAARGIMGWLGDCAKVI-----ACENQAVCWTTPLGLPVVQPYCKTERYQIRTSLQ-LLALQREG--SAVSVKKQRSAFPPNFVH
#=GC scorecons                27734997874000679696966754563346337745700000000000000000000000000000000000000334863467232222224859957966799599999359456993459352222676464446340000463955444645663594466554496454634621222744546659699999584999444443464934503445445500354555894695699679
#=GC scorecons_70             _**__*****____*****_**_*___*______**__*_________________________________________**__**_________*_**_***_***_*****__*__***___*______**__*___*_______*_*_________*__*__**____**______*_____*____*__*******_*_***_________*____________________**__*__*****
#=GC scorecons_80             __*__****______**_*_*__*__________*___*_________________________________________*____*_________*_**__*___**_*****__*___**___*_______*________________*____________*________*_____________*_______*_*****_*_***_________*____________________**__*__**__*
#=GC scorecons_90             _____**_*_______*_*_*___________________________________________________________*________________**__*___**_*****__*___**___*________________________*____________*________*_____________________*_*****_*_***_________*____________________**__*__**__*
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