# STOCKHOLM 1.0
#=GF ID 1.10.150.20/FF/000074
#=GF DE DNA-directed RNA polymerase
#=GF AC 1.10.150.20/FF/000074
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 6.680
#=GS Q8IIB0/1199-1435      AC Q8IIB0
#=GS Q8IIB0/1199-1435      OS Plasmodium falciparum 3D7
#=GS Q8IIB0/1199-1435      DE DNA-directed RNA polymerase
#=GS Q8IIB0/1199-1435      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS Q8IIB0/1199-1435      DR GO; GO:0003677; GO:0003899; GO:0005739; GO:0006351; 
#=GS A0A060RUT3/1178-1409  AC A0A060RUT3
#=GS A0A060RUT3/1178-1409  OS Plasmodium reichenowi
#=GS A0A060RUT3/1178-1409  DE DNA-directed RNA polymerase
#=GS A0A060RUT3/1178-1409  DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium reichenowi; 
#=GS W7JSU5/1199-1435      AC W7JSU5
#=GS W7JSU5/1199-1435      OS Plasmodium falciparum NF54
#=GS W7JSU5/1199-1435      DE DNA-directed RNA polymerase
#=GS W7JSU5/1199-1435      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS W4IU90/1205-1441      AC W4IU90
#=GS W4IU90/1205-1441      OS Plasmodium falciparum Palo Alto/Uganda
#=GS W4IU90/1205-1441      DE DNA-directed RNA polymerase
#=GS W4IU90/1205-1441      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS W4IF22/1171-1407      AC W4IF22
#=GS W4IF22/1171-1407      OS Plasmodium falciparum NF135/5.C10
#=GS W4IF22/1171-1407      DE DNA-directed RNA polymerase
#=GS W4IF22/1171-1407      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS Q9GZ07/1171-1407      AC Q9GZ07
#=GS Q9GZ07/1171-1407      OS Plasmodium falciparum
#=GS Q9GZ07/1171-1407      DE DNA-directed RNA polymerase
#=GS Q9GZ07/1171-1407      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A024UZK9/1171-1407  AC A0A024UZK9
#=GS A0A024UZK9/1171-1407  OS Plasmodium falciparum Vietnam Oak-Knoll (FVO)
#=GS A0A024UZK9/1171-1407  DE DNA-directed RNA polymerase
#=GS A0A024UZK9/1171-1407  DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A0L1IE34/1171-1407  AC A0A0L1IE34
#=GS A0A0L1IE34/1171-1407  OS Plasmodium falciparum IGH-CR14
#=GS A0A0L1IE34/1171-1407  DE DNA-directed RNA polymerase
#=GS A0A0L1IE34/1171-1407  DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A0L7KEL6/1181-1417  AC A0A0L7KEL6
#=GS A0A0L7KEL6/1181-1417  OS Plasmodium falciparum HB3
#=GS A0A0L7KEL6/1181-1417  DE DNA-directed RNA polymerase
#=GS A0A0L7KEL6/1181-1417  DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A024VR36/1164-1400  AC A0A024VR36
#=GS A0A024VR36/1164-1400  OS Plasmodium falciparum FCH/4
#=GS A0A024VR36/1164-1400  DE DNA-directed RNA polymerase
#=GS A0A024VR36/1164-1400  DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS W7F5V3/1175-1411      AC W7F5V3
#=GS W7F5V3/1175-1411      OS Plasmodium falciparum 7G8
#=GS W7F5V3/1175-1411      DE DNA-directed RNA polymerase
#=GS W7F5V3/1175-1411      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A0L0CXD5/1165-1401  AC A0A0L0CXD5
#=GS A0A0L0CXD5/1165-1401  OS Plasmodium falciparum RAJ116
#=GS A0A0L0CXD5/1165-1401  DE DNA-directed RNA polymerase
#=GS A0A0L0CXD5/1165-1401  DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A0L7M8B9/1171-1407  AC A0A0L7M8B9
#=GS A0A0L7M8B9/1171-1407  OS Plasmodium falciparum Dd2
#=GS A0A0L7M8B9/1171-1407  DE DNA-directed RNA polymerase
#=GS A0A0L7M8B9/1171-1407  DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A024X731/1215-1451  AC A0A024X731
#=GS A0A024X731/1215-1451  OS Plasmodium falciparum CAMP/Malaysia
#=GS A0A024X731/1215-1451  DE DNA-directed RNA polymerase
#=GS A0A024X731/1215-1451  DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A024WPZ5/1087-1323  AC A0A024WPZ5
#=GS A0A024WPZ5/1087-1323  OS Plasmodium falciparum MaliPS096_E11
#=GS A0A024WPZ5/1087-1323  DE DNA-directed RNA polymerase
#=GS A0A024WPZ5/1087-1323  DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS W7FG20/1191-1427      AC W7FG20
#=GS W7FG20/1191-1427      OS Plasmodium falciparum Santa Lucia
#=GS W7FG20/1191-1427      DE DNA-directed RNA polymerase
#=GS W7FG20/1191-1427      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS W7JLV2/1181-1417      AC W7JLV2
#=GS W7JLV2/1181-1417      OS Plasmodium falciparum UGT5.1
#=GS W7JLV2/1181-1417      DE DNA-directed RNA polymerase
#=GS W7JLV2/1181-1417      DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A024VX49/506-740    AC A0A024VX49
#=GS A0A024VX49/506-740    OS Plasmodium falciparum Tanzania (2000708)
#=GS A0A024VX49/506-740    DE DNA-directed RNA polymerase
#=GS A0A024VX49/506-740    DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum; 
#=GS A0A151LCH5/1159-1390  AC A0A151LCH5
#=GS A0A151LCH5/1159-1390  OS Plasmodium reichenowi
#=GS A0A151LCH5/1159-1390  DE DNA-directed RNA polymerase
#=GS A0A151LCH5/1159-1390  DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium reichenowi; 
#=GF SQ 19
Q8IIB0/1199-1435              YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
A0A060RUT3/1178-1409          YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLLNISNSHHNNIISSSINENINKNKKYNNSINN-----YNNNHNSNCNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
W7JSU5/1199-1435              YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
W4IU90/1205-1441              YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
W4IF22/1171-1407              YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
Q9GZ07/1171-1407              YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
A0A024UZK9/1171-1407          YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
A0A0L1IE34/1171-1407          YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
A0A0L7KEL6/1181-1417          YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
A0A024VR36/1164-1400          YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
W7F5V3/1175-1411              YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
A0A0L0CXD5/1165-1401          YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
A0A0L7M8B9/1171-1407          YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
A0A024X731/1215-1451          YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
A0A024WPZ5/1087-1323          YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
W7FG20/1191-1427              YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
W7JLV2/1181-1417              YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
A0A024VX49/506-740            YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMNISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNF--
A0A151LCH5/1159-1390          YGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLLNISNSHHNNIISSSINENINKNKKYNNSINN-----YNNNHNRNCNSNVNKNELASYCFKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVH
#=GC scorecons                999999999999999999999999999999999699995999999949999995599999959992222259999969599999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999977
#=GC scorecons_70             **************************************_*******_******__******_***______*****_*_**************************************************************************************************************************************************************
#=GC scorecons_80             *********************************_****_*******_******__******_***______*****_*_**************************************************************************************************************************************************************
#=GC scorecons_90             *********************************_****_*******_******__******_***______*****_*_************************************************************************************************************************************************************__
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