# STOCKHOLM 1.0
#=GF ID 1.10.150.20/FF/000071
#=GF DE Flap endonuclease 1
#=GF AC 1.10.150.20/FF/000071
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 74.760
#=GS A8B672/217-283      AC A8B672
#=GS A8B672/217-283      OS Giardia lamblia ATCC 50803
#=GS A8B672/217-283      DE Flap endonuclease 1
#=GS A8B672/217-283      DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; 
#=GS P0CS61/223-292      AC P0CS61
#=GS P0CS61/223-292      OS Cryptococcus neoformans var. neoformans B-3501A
#=GS P0CS61/223-292      DE Flap endonuclease 1
#=GS P0CS61/223-292      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; 
#=GS A0CXT3/222-297      AC A0CXT3
#=GS A0CXT3/222-297      OS Paramecium tetraurelia
#=GS A0CXT3/222-297      DE Flap endonuclease 1-1
#=GS A0CXT3/222-297      DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GS A0A1E3J699/231-299  AC A0A1E3J699
#=GS A0A1E3J699/231-299  OS Tsuchiyaea wingfieldii CBS 7118
#=GS A0A1E3J699/231-299  DE Flap endonuclease 1
#=GS A0A1E3J699/231-299  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Tsuchiyaea; Tsuchiyaea wingfieldii; 
#=GS A0A095EB14/223-290  AC A0A095EB14
#=GS A0A095EB14/223-290  OS Cryptococcus gattii VGII R265
#=GS A0A095EB14/223-290  DE Flap endonuclease 1
#=GS A0A095EB14/223-290  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; 
#=GS A0A1E3HH11/224-292  AC A0A1E3HH11
#=GS A0A1E3HH11/224-292  OS Cryptococcus amylolentus CBS 6039
#=GS A0A1E3HH11/224-292  DE Flap endonuclease 1
#=GS A0A1E3HH11/224-292  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus amylolentus; 
#=GS E6R3P3/224-292      AC E6R3P3
#=GS E6R3P3/224-292      OS Cryptococcus gattii WM276
#=GS E6R3P3/224-292      DE Flap endonuclease 1
#=GS E6R3P3/224-292      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; 
#=GS A0A0D0VUB1/224-292  AC A0A0D0VUB1
#=GS A0A0D0VUB1/224-292  OS Cryptococcus gattii CA1280
#=GS A0A0D0VUB1/224-292  DE Flap endonuclease 1
#=GS A0A0D0VUB1/224-292  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIII; 
#=GS A0A0D0X1V9/224-291  AC A0A0D0X1V9
#=GS A0A0D0X1V9/224-291  OS Cryptococcus gattii VGIV IND107
#=GS A0A0D0X1V9/224-291  DE Flap endonuclease 1
#=GS A0A0D0X1V9/224-291  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIV; 
#=GS A0A226BHN2/223-292  AC A0A226BHN2
#=GS A0A226BHN2/223-292  OS Cryptococcus neoformans var. grubii Bt85
#=GS A0A226BHN2/223-292  DE Flap endonuclease 1
#=GS A0A226BHN2/223-292  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS P0CS60/223-292      AC P0CS60
#=GS P0CS60/223-292      OS Cryptococcus neoformans var. neoformans JEC21
#=GS P0CS60/223-292      DE Flap endonuclease 1
#=GS P0CS60/223-292      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; 
#=GS A0A1E3JQK1/231-299  AC A0A1E3JQK1
#=GS A0A1E3JQK1/231-299  OS Cryptococcus amylolentus CBS 6273
#=GS A0A1E3JQK1/231-299  DE Flap endonuclease 1
#=GS A0A1E3JQK1/231-299  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus amylolentus; 
#=GS A0A0D0YD53/224-291  AC A0A0D0YD53
#=GS A0A0D0YD53/224-291  OS Cryptococcus gattii EJB2
#=GS A0A0D0YD53/224-291  DE Flap endonuclease 1
#=GS A0A0D0YD53/224-291  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGI; 
#=GS A0A0D0T9G7/223-290  AC A0A0D0T9G7
#=GS A0A0D0T9G7/223-290  OS Cryptococcus gattii VGII Ram5
#=GS A0A0D0T9G7/223-290  DE Flap endonuclease 1
#=GS A0A0D0T9G7/223-290  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGII; 
#=GS J9VNZ1/223-292      AC J9VNZ1
#=GS J9VNZ1/223-292      OS Cryptococcus neoformans var. grubii H99
#=GS J9VNZ1/223-292      DE Flap endonuclease 1
#=GS J9VNZ1/223-292      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS A0A225YYE3/223-292  AC A0A225YYE3
#=GS A0A225YYE3/223-292  OS Cryptococcus neoformans var. grubii c45
#=GS A0A225YYE3/223-292  DE Flap endonuclease 1
#=GS A0A225YYE3/223-292  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; 
#=GS E1F5K1/217-283      AC E1F5K1
#=GS E1F5K1/217-283      OS Giardia lamblia P15
#=GS E1F5K1/217-283      DE Flap endonuclease 1
#=GS E1F5K1/217-283      DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; 
#=GS V6TRX3/217-283      AC V6TRX3
#=GS V6TRX3/217-283      OS Giardia intestinalis
#=GS V6TRX3/217-283      DE Flap endonuclease 1
#=GS V6TRX3/217-283      DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; 
#=GS A0A132NXU9/217-283  AC A0A132NXU9
#=GS A0A132NXU9/217-283  OS Giardia intestinalis assemblage B
#=GS A0A132NXU9/217-283  DE Flap endonuclease 1
#=GS A0A132NXU9/217-283  DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; 
#=GS V6U168/217-283      AC V6U168
#=GS V6U168/217-283      OS Giardia intestinalis
#=GS V6U168/217-283      DE Flap endonuclease 1
#=GS V6U168/217-283      DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; 
#=GS C6LTJ8/217-283      AC C6LTJ8
#=GS C6LTJ8/217-283      OS Giardia intestinalis ATCC 50581
#=GS C6LTJ8/217-283      DE Flap endonuclease 1
#=GS C6LTJ8/217-283      DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; 
#=GS A0CYG2/221-297      AC A0CYG2
#=GS A0CYG2/221-297      OS Paramecium tetraurelia
#=GS A0CYG2/221-297      DE Flap endonuclease 1-2
#=GS A0CYG2/221-297      DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; 
#=GF SQ 22
A8B672/217-283              FSYDEFLDLCILCGCDYANSLEGIGPKTAYKLIVKHRSIEEVLAADQGKLAEKALN-----------WPYVRARELFK-------
P0CS61/223-292              ----QFIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGKMAEKAEE-----------IKAAADEEAEAEAEAEKY
A0CXT3/222-297              ---EQFVDLCILCGCDYTEKIEGIGPGTAYKLIKEFKSIEGILEHVQKVNAEREKNKQNPKYTVPTKFLYQDSRELFIT------
A0A1E3J699/231-299          -----FIELCVLLGCDYLEPCKGIGPKTALKLMREHGSLGKVVEHIRGKMAEKAEE-----------IKAAQEEEAEAEGEAEIY
A0A095EB14/223-290          ----QFIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGKMAEKAEE-----------IQAAAEEEAEAEAEAE--
A0A1E3HH11/224-292          -----FIELCVLLGCDYLEPCKGIGPKTALKLMREHGSLGKVVEHIRGKMAEKAEE-----------IKAAQEEEAEAEGEAETY
E6R3P3/224-292              -----FIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGKMAEKAEE-----------IKAAADEEAEAEAEAEKY
A0A0D0VUB1/224-292          -----FIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGKMAEKAEE-----------IKAAAEEEAEAEAEAEKY
A0A0D0X1V9/224-291          -----FIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGKMAEKAEE-----------IKAAADEEAEAEAEAEK-
A0A226BHN2/223-292          ----QFIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGKMAEKAEE-----------IKAAAEEEAEAEAEAEKY
P0CS60/223-292              ----QFIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGKMAEKAEE-----------IKAAADEEAEAEAEAEKY
A0A1E3JQK1/231-299          -----FIELCVLLGCDYLEPCKGIGPKTALKLMREHGSLGKVVEHIRGKMAEKAEE-----------IKAAQEEEAEAEGEAETY
A0A0D0YD53/224-291          -----FIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGKMAEKAEE-----------IKAAADEEAEAEAEAEK-
A0A0D0T9G7/223-290          ----QFIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGKMAEKAEE-----------IQAAAEEEAEAEAEAE--
J9VNZ1/223-292              ----QFIELCILLGCDYLEPCKGIGPKTALKLMREHGTLGKVVEHIRGKMAEKAEE-----------IKAAAEEEAEAEAEAEKY
A0A225YYE3/223-292          ----QFIELCILLGCDYLEPCKGIGPKTALKLMREHGTLSKVVEHIRGKMAEKAEE-----------IKAAAEEEAEAEAEAEKY
E1F5K1/217-283              FSYDEFLDLCILCGCDYANSLEGIGPKTAYKLIVKHRSIEEVLAADQGKLAEKALN-----------WPYVRARELFK-------
V6TRX3/217-283              FSYDEFLDLCILCGCDYANSLEGIGPKTAYKLIVKHRSIEEVLAADQGKLAEKALN-----------WPYVRARELFK-------
A0A132NXU9/217-283          FSYDEFLDLCILCGCDYANSLEGIGPKTAYKLIVKYRSIEEALAADQGKLAEKAVN-----------WPYARARELFK-------
V6U168/217-283              FSYDEFLDLCILCGCDYANSLEGIGPKTAYKLIVKYRSIEEALAADQGKLAEKAVN-----------WPYARARELFK-------
C6LTJ8/217-283              FSYDEFLDLCILCGCDYANSLEGIGPKTAYKLIVKYRSIEEALAADQGKLAEKAVN-----------WPYARARELFK-------
A0CYG2/221-297              --YEQFVDLCILCGCDYTEKIEGIGPGTAYKLIKEYKSIEGILEHVQKVNAEREKNNQNPKYTVPSKFLYQDSRELFIT------
#=GC scorecons              1111396799894999946546999979959964665665566554676599874600000000000444544595442122201
#=GC scorecons_70           _____*_*****_****_*___*******_***_**_**__**___***_****____________________*__________
#=GC scorecons_80           _____*__****_****_____****_**_**__________________***_____________________*__________
#=GC scorecons_90           _____*__****_****_____****_**_**__________________**______________________*__________
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