# STOCKHOLM 1.0
#=GF ID 1.10.150.20/FF/000122
#=GF DE DNA-directed RNA polymerase subunit alpha
#=GF AC 1.10.150.20/FF/000122
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 11.282
#=GS P56001/251-333      AC P56001
#=GS P56001/251-333      OS Helicobacter pylori 26695
#=GS P56001/251-333      DE DNA-directed RNA polymerase subunit alpha
#=GS P56001/251-333      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; 
#=GS P56001/251-333      DR EC; 2.7.7.6; 
#=GS Q17ZB4/251-336      AC Q17ZB4
#=GS Q17ZB4/251-336      OS Helicobacter acinonychis str. Sheeba
#=GS Q17ZB4/251-336      DE DNA-directed RNA polymerase subunit alpha
#=GS Q17ZB4/251-336      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter acinonychis; 
#=GS Q17ZB4/251-336      DR EC; 2.7.7.6; 
#=GS I0ES84/250-333      AC I0ES84
#=GS I0ES84/250-333      OS Helicobacter cetorum MIT 99-5656
#=GS I0ES84/250-333      DE DNA-directed RNA polymerase subunit alpha
#=GS I0ES84/250-333      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter cetorum; 
#=GS Q1CRW7/251-333      AC Q1CRW7
#=GS Q1CRW7/251-333      OS Helicobacter pylori HPAG1
#=GS Q1CRW7/251-333      DE DNA-directed RNA polymerase subunit alpha
#=GS Q1CRW7/251-333      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; 
#=GS Q1CRW7/251-333      DR EC; 2.7.7.6; 
#=GS A0A1Y3E2M8/251-333  AC A0A1Y3E2M8
#=GS A0A1Y3E2M8/251-333  OS Helicobacter pylori SS1
#=GS A0A1Y3E2M8/251-333  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A1Y3E2M8/251-333  DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; 
#=GS A0A1Y3E2M8/251-333  DR EC; 2.7.7.6; 
#=GS A0A246LSG1/251-333  AC A0A246LSG1
#=GS A0A246LSG1/251-333  OS Helicobacter pylori
#=GS A0A246LSG1/251-333  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A246LSG1/251-333  DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; 
#=GS A0A246LSG1/251-333  DR EC; 2.7.7.6; 
#=GS M7RPB7/251-333      AC M7RPB7
#=GS M7RPB7/251-333      OS Helicobacter pylori CCHI 33
#=GS M7RPB7/251-333      DE DNA-directed RNA polymerase subunit alpha
#=GS M7RPB7/251-333      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; 
#=GS M7RPB7/251-333      DR EC; 2.7.7.6; 
#=GS Q9ZJT5/251-333      AC Q9ZJT5
#=GS Q9ZJT5/251-333      OS Helicobacter pylori J99
#=GS Q9ZJT5/251-333      DE DNA-directed RNA polymerase subunit alpha
#=GS Q9ZJT5/251-333      DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; 
#=GS Q9ZJT5/251-333      DR EC; 2.7.7.6; 
#=GS A0A1W0VN90/251-333  AC A0A1W0VN90
#=GS A0A1W0VN90/251-333  OS Helicobacter pylori
#=GS A0A1W0VN90/251-333  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A1W0VN90/251-333  DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; 
#=GS A0A1W0VN90/251-333  DR EC; 2.7.7.6; 
#=GF SQ 9
P56001/251-333              -RDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGYPVGTELSPEQRESLKKR---
Q17ZB4/251-336              -RDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGYPVGTELSLEQRESLKKRLEK
I0ES84/250-333              QKDDSKDLSAKIETMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGYPVGTELSSEQKENLKKR---
Q1CRW7/251-333              -RDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGYPVGTELSPEQRESLKKR---
A0A1Y3E2M8/251-333          -RDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGYPVGTELSPEQRESLKKR---
A0A246LSG1/251-333          -RDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGYPVGTELSPEQRESLKKR---
M7RPB7/251-333              -RDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGYPVGTELSPEQRESLKKR---
Q9ZJT5/251-333              -RDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGYPVGTELSPEQRESLKKR---
A0A1W0VN90/251-333          -RDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGYPVGTELSPEQRESLKKR---
#=GC scorecons              079969999999969999999999999999999999999999999999999999999999999999999999994997969999000
#=GC scorecons_70           _***_********_************************************************************_****_****___
#=GC scorecons_80           __**_********_************************************************************_**_*_****___
#=GC scorecons_90           __**_********_************************************************************_**_*_****___
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