# STOCKHOLM 1.0
#=GF ID 1.10.150.20/FF/000120
#=GF DE DNA-directed RNA polymerase subunit alpha
#=GF AC 1.10.150.20/FF/000120
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 48.879
#=GS Q7NFF5/241-310      AC Q7NFF5
#=GS Q7NFF5/241-310      OS Gloeobacter violaceus PCC 7421
#=GS Q7NFF5/241-310      DE DNA-directed RNA polymerase subunit alpha
#=GS Q7NFF5/241-310      DR ORG; Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacteraceae; Gloeobacter; Gloeobacter violaceus; 
#=GS Q7NFF5/241-310      DR EC; 2.7.7.6; 
#=GS A0T0Z4/223-313      AC A0T0Z4
#=GS A0T0Z4/223-313      OS Thalassiosira pseudonana
#=GS A0T0Z4/223-313      DE DNA-directed RNA polymerase subunit alpha
#=GS A0T0Z4/223-313      DR ORG; Eukaryota; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira; Thalassiosira pseudonana; 
#=GS A0T0Z4/223-313      DR EC; 2.7.7.6; 
#=GS L8AGE0/243-310      AC L8AGE0
#=GS L8AGE0/243-310      OS Bacillus subtilis BEST7613
#=GS L8AGE0/243-310      DE DNA-directed RNA polymerase subunit alpha
#=GS L8AGE0/243-310      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; 
#=GS L8AGE0/243-310      DR EC; 2.7.7.6; 
#=GS P73297/243-310      AC P73297
#=GS P73297/243-310      OS Synechocystis sp. PCC 6803 substr. Kazusa
#=GS P73297/243-310      DE DNA-directed RNA polymerase subunit alpha
#=GS P73297/243-310      DR ORG; Bacteria; Cyanobacteria; Synechococcales; Merismopediaceae; Synechocystis; Synechocystis sp. PCC 6803; 
#=GS P73297/243-310      DR EC; 2.7.7.6; 
#=GS A0A0V7ZP70/241-307  AC A0A0V7ZP70
#=GS A0A0V7ZP70/241-307  OS Mastigocoleus testarum BC008
#=GS A0A0V7ZP70/241-307  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A0V7ZP70/241-307  DR ORG; Bacteria; Cyanobacteria; Nostocales; Hapalosiphonaceae; Mastigocoleus; Mastigocoleus testarum; 
#=GS A0A2T1M3K3/244-311  AC A0A2T1M3K3
#=GS A0A2T1M3K3/244-311  OS Aphanothece hegewaldii CCALA 016
#=GS A0A2T1M3K3/244-311  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A2T1M3K3/244-311  DR ORG; Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Aphanothecaceae; Aphanothece; Aphanothece hegewaldii; 
#=GS A0A251WH83/260-328  AC A0A251WH83
#=GS A0A251WH83/260-328  OS Alkalinema sp. CACIAM 70d
#=GS A0A251WH83/260-328  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A251WH83/260-328  DR ORG; Bacteria; Cyanobacteria; Synechococcales; Leptolyngbyaceae; Alkalinema; Alkalinema sp. CACIAM 70d; 
#=GS A0A2T1DLY8/256-321  AC A0A2T1DLY8
#=GS A0A2T1DLY8/256-321  OS Phormidesmis priestleyi ULC007
#=GS A0A2T1DLY8/256-321  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A2T1DLY8/256-321  DR ORG; Bacteria; Cyanobacteria; Synechococcales; Leptolyngbyaceae; Phormidesmis; Phormidesmis priestleyi; 
#=GS U5QGU2/240-310      AC U5QGU2
#=GS U5QGU2/240-310      OS Gloeobacter kilaueensis JS1
#=GS U5QGU2/240-310      DE DNA-directed RNA polymerase subunit alpha
#=GS U5QGU2/240-310      DR ORG; Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacteraceae; Gloeobacter; Gloeobacter kilaueensis; 
#=GF SQ 9
Q7NFF5/241-310              ------------------------NTVGQVPIEELQLSVRAYNCLKRAQINTVADLLEYTEEDLLEIKNFGQKSAEEVIEALQDKMGLSLPKDK
A0T0Z4/223-313              KSIGEQKINKEKENIKEKNHIKPIDPYTHIAIEELQLSVRPYNCLKRAQINTIGDLLDYSPEKLLELKNFGRKSADEVFATLKNKLGIVLK---
L8AGE0/243-310              -------------------------PESQIPIEELQLSVRAYNCLKRAQINSVADLLEYSQEDLLEIKNFGLKSAEEVIEALQKRLGITLPHE-
P73297/243-310              -------------------------PESQIPIEELQLSVRAYNCLKRAQINSVADLLEYSQEDLLEIKNFGLKSAEEVIEALQKRLGITLPHE-
A0A0V7ZP70/241-307          ------------------------DPTAQIPIEELQLSVRAYNCLKRAQVNSVADLLDYTQEDLLEIKNFGQKSAEEVVEALQRRLGITLP---
A0A2T1M3K3/244-311          --------------------------ESQIPIEELQLSVRAYNCLKRAQINTVADLLDYSQEDLLEIKNFGQKSAEEVIEALQKRLGITLPQEK
A0A251WH83/260-328          -------------------------PESQIPIEELQLSVRAYNCLKRAQINSVADLLDYTQEDLLEIKNFGAKSAEEVVEALQERLGITLPKEK
A0A2T1DLY8/256-321          --------------------------ESQIPIEELQLSVRAYNCLKRAQINSVADLLDYTQEDLLEIKNFGQKSAEEVVEALQQRLGITLPM--
U5QGU2/240-310              S-----------------------NTVGQVPIEELQLSVRAYNCLKRAQINTVADLLEYTEEDLLEIKNFGQKSAEEVIEALQEKMGLSLPKDK
#=GC scorecons              0000000000000000000000001424776999999999699999999895769997954969996999949997995569646797495111
#=GC scorecons_70           ____________________________***********************_*******__*_********_******__***_****_*____
#=GC scorecons_80           _____________________________*_*********_**********_*_***_*__*_***_****_******___*___**__*____
#=GC scorecons_90           _______________________________*********_**********___***_*__*_***_****_***_**___*____*__*____
//