# STOCKHOLM 1.0
#=GF ID 1.10.150.20/FF/000103
#=GF DE DNA-directed RNA polymerase subunit alpha
#=GF AC 1.10.150.20/FF/000103
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 81.721
#=GS Q50295/252-327      AC Q50295
#=GS Q50295/252-327      OS Mycoplasma pneumoniae M129
#=GS Q50295/252-327      DE DNA-directed RNA polymerase subunit alpha
#=GS Q50295/252-327      DR ORG; Bacteria; Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma; Mycoplasma pneumoniae; 
#=GS Q50295/252-327      DR EC; 2.7.7.6; 
#=GS Q8RE44/254-323      AC Q8RE44
#=GS Q8RE44/254-323      OS Fusobacterium nucleatum subsp. nucleatum ATCC 25586
#=GS Q8RE44/254-323      DE DNA-directed RNA polymerase subunit alpha
#=GS Q8RE44/254-323      DR ORG; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium nucleatum; Fusobacterium nucleatum subsp. nucleatum; 
#=GS Q8RE44/254-323      DR EC; 2.7.7.6; 
#=GS A9WI15/245-311      AC A9WI15
#=GS A9WI15/245-311      OS Chloroflexus aurantiacus J-10-fl
#=GS A9WI15/245-311      DE DNA-directed RNA polymerase subunit alpha
#=GS A9WI15/245-311      DR ORG; Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus; Chloroflexus aurantiacus; 
#=GS A9WH93/244-307      AC A9WH93
#=GS A9WH93/244-307      OS Chloroflexus aurantiacus J-10-fl
#=GS A9WH93/244-307      DE DNA-directed RNA polymerase subunit alpha
#=GS A9WH93/244-307      DR ORG; Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus; Chloroflexus aurantiacus; 
#=GS A0A3M1WCL1/245-311  AC A0A3M1WCL1
#=GS A0A3M1WCL1/245-311  OS Chloroflexi bacterium
#=GS A0A3M1WCL1/245-311  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A3M1WCL1/245-311  DR ORG; Bacteria; Chloroflexi; Chloroflexi bacterium; 
#=GS P47423/253-328      AC P47423
#=GS P47423/253-328      OS Mycoplasma genitalium G37
#=GS P47423/253-328      DE DNA-directed RNA polymerase subunit alpha
#=GS P47423/253-328      DR ORG; Bacteria; Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma; Mycoplasma genitalium; 
#=GS P47423/253-328      DR EC; 2.7.7.6; 
#=GS A0A178MIE4/245-312  AC A0A178MIE4
#=GS A0A178MIE4/245-312  OS Chloroflexus islandicus
#=GS A0A178MIE4/245-312  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A178MIE4/245-312  DR ORG; Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus; Chloroflexus islandicus; 
#=GS B8G8K2/245-312      AC B8G8K2
#=GS B8G8K2/245-312      OS Chloroflexus aggregans DSM 9485
#=GS B8G8K2/245-312      DE DNA-directed RNA polymerase subunit alpha
#=GS B8G8K2/245-312      DR ORG; Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus; Chloroflexus aggregans; 
#=GS F9EPN7/270-339      AC F9EPN7
#=GS F9EPN7/270-339      OS Fusobacterium nucleatum subsp. animalis ATCC 51191
#=GS F9EPN7/270-339      DE DNA-directed RNA polymerase subunit alpha
#=GS F9EPN7/270-339      DR ORG; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium nucleatum; Fusobacterium nucleatum subsp. animalis; 
#=GS A0A3M1W5F7/244-307  AC A0A3M1W5F7
#=GS A0A3M1W5F7/244-307  OS Chloroflexi bacterium
#=GS A0A3M1W5F7/244-307  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A3M1W5F7/244-307  DR ORG; Bacteria; Chloroflexi; Chloroflexi bacterium; 
#=GS B8G6P8/244-307      AC B8G6P8
#=GS B8G6P8/244-307      OS Chloroflexus aggregans DSM 9485
#=GS B8G6P8/244-307      DE DNA-directed RNA polymerase subunit alpha
#=GS B8G6P8/244-307      DR ORG; Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus; Chloroflexus aggregans; 
#=GS A0A3M0Z6M8/244-307  AC A0A3M0Z6M8
#=GS A0A3M0Z6M8/244-307  OS Chloroflexi bacterium
#=GS A0A3M0Z6M8/244-307  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A3M0Z6M8/244-307  DR ORG; Bacteria; Chloroflexi; Chloroflexi bacterium; 
#=GF SQ 12
Q50295/252-327              IQEKAEERRVRSFAKQIEELDFTVRTFNCLKRSGIHTLQELLSKSLADIREIRNLGKKSEREIIKKVHELGLKLRS--
Q8RE44/254-323              --------DDKSHDMKIEELDLTVRSFNCLKKAGIEEVSQLASLSLNELLKIKNLGKKSLDEILEKMKDLGYDLEKNG
A9WI15/245-311              --------PEEIASRTIDELGLSTRTYNSLRRAEIHTIGQLLRLDDRGLMSIRNLGAKGIEEIHQRLEALGYRSG---
A9WH93/244-307              ---------AHVYDTSIETLDLSTRTYNCLKRAEITKIGQVLQMDEKALLSVRNLGQKSMEEIRDKLIERGYI-----
A0A3M1WCL1/245-311          --------PEEIASRTIDELGLSTRTYNSLRRAEIHTIGQLLRLDDRGLMSIRNLGAKGIEEIHQRLEALGYRSG---
P47423/253-328              IQEKAEERKVKSFAKQIEELDFTVRTFNCLKRSGIHTLQELLSKSLTDIREIRNLGKKSEREIIKKVQELGLKFRS--
A0A178MIE4/245-312          --------PEEIANRTIDELGLSTRTYNSLRRAEIHTIGQLLRLDDRGLMGIRNLGAKGIEEIHHRLEALGYRSGE--
B8G8K2/245-312              --------PDEIANRTIDELGLSTRTYNSLRRADIQTIGQLLRLDDRGLMSIRNLGAKGIEEIHQRLAALGYRSGE--
F9EPN7/270-339              --------DDKSHDMKIEELDLTVRSFNCLKKAGIEEVSQLASLSLNELLKIKNLGKKSLDEILEKMKDLGYDLEKNG
A0A3M1W5F7/244-307          ---------AHVYDTSIETLDLSTRTYNCLKRAEITKIGQVLQMDEKALLSVRNLGQKSMEEIRDKLIERGYI-----
B8G6P8/244-307              ---------PSVYDTSIETLELSTRTYNCLKRAEITKIGQVLQMDEKALLSVRNLGQKSMEEIRDKLIERGYI-----
A0A3M0Z6M8/244-307          ---------PSVYDTSIETLELSTRTYNCLKRAEITKIGQVLQMDEKALLSVRNLGQKSMEEIRDKLIERGYI-----
#=GC scorecons              000000001344444497595765977969776594465766445344744779994964599347635596322100
#=GC scorecons_70           ________________**_*_*__*********_*__*_***______*__*****_**__**__*____**______
#=GC scorecons_80           ________________**_*_*__*_**_***__*____*________*__*****_*___**__*____*_______
#=GC scorecons_90           ________________*__*____*__*_*____*__________________***_*___**_______*_______
//