# STOCKHOLM 1.0 #=GF ID 1.10.101.10/FF/000006 #=GF DE L,D-transpeptidase YcbB #=GF AC 1.10.101.10/FF/000006 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 19.847 #=GS P22525/237-264_301-350 AC P22525 #=GS P22525/237-264_301-350 OS Escherichia coli K-12 #=GS P22525/237-264_301-350 DE Probable L,D-transpeptidase YcbB #=GS P22525/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS P22525/237-264_301-350 DR GO; GO:0005887; GO:0006974; GO:0016755; GO:0016807; GO:0043164; GO:0044036; GO:0071972; #=GS Q32E46/237-264_301-350 AC Q32E46 #=GS Q32E46/237-264_301-350 OS Shigella dysenteriae Sd197 #=GS Q32E46/237-264_301-350 DE Putative amidase #=GS Q32E46/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; #=GS Q8ZQB5/237-265_307-348 AC Q8ZQB5 #=GS Q8ZQB5/237-265_307-348 OS Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 #=GS Q8ZQB5/237-265_307-348 DE Putative periplasmic protein #=GS Q8ZQB5/237-265_307-348 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS I6H756/237-264_301-350 AC I6H756 #=GS I6H756/237-264_301-350 OS Shigella flexneri 1235-66 #=GS I6H756/237-264_301-350 DE Putative L,D-transpeptidase YcbB #=GS I6H756/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; #=GS A0A0W3KZB5/237-265_307-348 AC A0A0W3KZB5 #=GS A0A0W3KZB5/237-265_307-348 OS Salmonella enterica #=GS A0A0W3KZB5/237-265_307-348 DE L,D-transpeptidase #=GS A0A0W3KZB5/237-265_307-348 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; #=GS A0A2S5ZTV3/237-264_301-350 AC A0A2S5ZTV3 #=GS A0A2S5ZTV3/237-264_301-350 OS Escherichia coli #=GS A0A2S5ZTV3/237-264_301-350 DE Putative peptidoglycan binding domain-containing protein #=GS A0A2S5ZTV3/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A090NPH5/237-264_301-350 AC A0A090NPH5 #=GS A0A090NPH5/237-264_301-350 OS Shigella dysenteriae WRSd3 #=GS A0A090NPH5/237-264_301-350 DE Cell wall degradation protein #=GS A0A090NPH5/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; #=GS A0A0A6ZVW5/237-264_301-350 AC A0A0A6ZVW5 #=GS A0A0A6ZVW5/237-264_301-350 OS Shigella dysenteriae 1617 #=GS A0A0A6ZVW5/237-264_301-350 DE Cell wall degradation protein #=GS A0A0A6ZVW5/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; #=GS A0A2X2KMA1/237-264_301-350 AC A0A2X2KMA1 #=GS A0A2X2KMA1/237-264_301-350 OS Shigella dysenteriae #=GS A0A2X2KMA1/237-264_301-350 DE Putative amidase #=GS A0A2X2KMA1/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella dysenteriae; #=GS A0A379ZM69/237-264_301-350 AC A0A379ZM69 #=GS A0A379ZM69/237-264_301-350 OS Shigella flexneri #=GS A0A379ZM69/237-264_301-350 DE Putative amidase #=GS A0A379ZM69/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; #=GS Q83RY5/237-264_301-350 AC Q83RY5 #=GS Q83RY5/237-264_301-350 OS Shigella flexneri #=GS Q83RY5/237-264_301-350 DE Putative amidase #=GS Q83RY5/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella; Shigella flexneri; #=GS Q8XDF5/237-264_301-350 AC Q8XDF5 #=GS Q8XDF5/237-264_301-350 OS Escherichia coli O157:H7 #=GS Q8XDF5/237-264_301-350 DE Murein L,D-transpeptidase #=GS Q8XDF5/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A0H3PPU6/237-264_301-350 AC A0A0H3PPU6 #=GS A0A0H3PPU6/237-264_301-350 OS Escherichia coli O157:H7 str. EC869 #=GS A0A0H3PPU6/237-264_301-350 DE Putative peptidoglycan binding domain #=GS A0A0H3PPU6/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A0F6C1C3/237-264_301-350 AC A0A0F6C1C3 #=GS A0A0F6C1C3/237-264_301-350 OS Escherichia coli Xuzhou21 #=GS A0A0F6C1C3/237-264_301-350 DE Uncharacterized protein #=GS A0A0F6C1C3/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A384LBJ2/237-264_301-350 AC A0A384LBJ2 #=GS A0A384LBJ2/237-264_301-350 OS Escherichia coli O157:H7 #=GS A0A384LBJ2/237-264_301-350 DE Putative amidase #=GS A0A384LBJ2/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A3V4X6H9/237-264_301-350 AC A0A3V4X6H9 #=GS A0A3V4X6H9/237-264_301-350 OS Salmonella enterica subsp. enterica #=GS A0A3V4X6H9/237-264_301-350 DE L,D-transpeptidase #=GS A0A3V4X6H9/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS A0A1Z3USH4/237-264_301-350 AC A0A1Z3USH4 #=GS A0A1Z3USH4/237-264_301-350 OS Escherichia coli O157 #=GS A0A1Z3USH4/237-264_301-350 DE L,D-transpeptidase #=GS A0A1Z3USH4/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS C3TG53/237-264_301-350 AC C3TG53 #=GS C3TG53/237-264_301-350 OS Escherichia coli #=GS C3TG53/237-264_301-350 DE L,D-transpeptidase #=GS C3TG53/237-264_301-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; #=GS A0A2T8RAH9/237-265_307-348 AC A0A2T8RAH9 #=GS A0A2T8RAH9/237-265_307-348 OS Salmonella enterica subsp. enterica serovar 4,12:i:- #=GS A0A2T8RAH9/237-265_307-348 DE L,D-transpeptidase #=GS A0A2T8RAH9/237-265_307-348 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS A0A0U1J8I7/237-265_307-348 AC A0A0U1J8I7 #=GS A0A0U1J8I7/237-265_307-348 OS Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 #=GS A0A0U1J8I7/237-265_307-348 DE Murein L,D-transpeptidase #=GS A0A0U1J8I7/237-265_307-348 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS A0A0D6GRL4/237-265_307-348 AC A0A0D6GRL4 #=GS A0A0D6GRL4/237-265_307-348 OS Salmonella enterica subsp. enterica serovar Typhimurium #=GS A0A0D6GRL4/237-265_307-348 DE L,D-transpeptidase #=GS A0A0D6GRL4/237-265_307-348 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS A0A315GPR1/237-265_307-348 AC A0A315GPR1 #=GS A0A315GPR1/237-265_307-348 OS Salmonella enterica subsp. enterica serovar 4,[5],12:i:- #=GS A0A315GPR1/237-265_307-348 DE L,D-transpeptidase #=GS A0A315GPR1/237-265_307-348 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS A0A3Z2F2Q5/237-265_307-348 AC A0A3Z2F2Q5 #=GS A0A3Z2F2Q5/237-265_307-348 OS Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 #=GS A0A3Z2F2Q5/237-265_307-348 DE L,D-transpeptidase #=GS A0A3Z2F2Q5/237-265_307-348 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS A0A3V8MSJ3/237-265_307-348 AC A0A3V8MSJ3 #=GS A0A3V8MSJ3/237-265_307-348 OS Salmonella enterica subsp. enterica serovar Typhimurium str. CFSAN000648 #=GS A0A3V8MSJ3/237-265_307-348 DE L,D-transpeptidase #=GS A0A3V8MSJ3/237-265_307-348 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS A0A0H3NF43/237-265_307-348 AC A0A0H3NF43 #=GS A0A0H3NF43/237-265_307-348 OS Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 #=GS A0A0H3NF43/237-265_307-348 DE Hypothetical exported protein #=GS A0A0H3NF43/237-265_307-348 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS A0A0F7J7R2/237-265_307-348 AC A0A0F7J7R2 #=GS A0A0F7J7R2/237-265_307-348 OS Salmonella enterica subsp. enterica #=GS A0A0F7J7R2/237-265_307-348 DE L,D-transpeptidase #=GS A0A0F7J7R2/237-265_307-348 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS E8XDE7/237-265_307-348 AC E8XDE7 #=GS E8XDE7/237-265_307-348 OS Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 #=GS E8XDE7/237-265_307-348 DE Putative L,D-transpeptidase YcbB #=GS E8XDE7/237-265_307-348 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS A0A0F6AZE5/237-265_307-348 AC A0A0F6AZE5 #=GS A0A0F6AZE5/237-265_307-348 OS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S #=GS A0A0F6AZE5/237-265_307-348 DE Uncharacterized protein #=GS A0A0F6AZE5/237-265_307-348 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS A0A447NXI3/237-265_309-350 AC A0A447NXI3 #=GS A0A447NXI3/237-265_309-350 OS Salmonella enterica subsp. enterica serovar Sanjuan #=GS A0A447NXI3/237-265_309-350 DE L,D-transpeptidase YcbB #=GS A0A447NXI3/237-265_309-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS A0A3V7TD03/237-265_309-350 AC A0A3V7TD03 #=GS A0A3V7TD03/237-265_309-350 OS Salmonella enterica #=GS A0A3V7TD03/237-265_309-350 DE L,D-transpeptidase #=GS A0A3V7TD03/237-265_309-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; #=GS A0A3Y7ULT3/237-265_309-350 AC A0A3Y7ULT3 #=GS A0A3Y7ULT3/237-265_309-350 OS Salmonella enterica subsp. enterica #=GS A0A3Y7ULT3/237-265_309-350 DE L,D-transpeptidase #=GS A0A3Y7ULT3/237-265_309-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GS Q8Z7Z4/237-265_309-350 AC Q8Z7Z4 #=GS Q8Z7Z4/237-265_309-350 OS Salmonella enterica subsp. enterica serovar Typhi #=GS Q8Z7Z4/237-265_309-350 DE Putative exported protein #=GS Q8Z7Z4/237-265_309-350 DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica; #=GF SQ 32 P22525/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV Q32E46/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV Q8ZQB5/237-265_307-348 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM I6H756/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV A0A0W3KZB5/237-265_307-348 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM A0A2S5ZTV3/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV A0A090NPH5/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV A0A0A6ZVW5/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV A0A2X2KMA1/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV A0A379ZM69/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV Q83RY5/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV Q8XDF5/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV A0A0H3PPU6/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV A0A0F6C1C3/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV A0A384LBJ2/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV A0A3V4X6H9/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV A0A1Z3USH4/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV C3TG53/237-264_301-350 -LTGKATLRPGQWSNDVPALREILQRTGMKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNV A0A2T8RAH9/237-265_307-348 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM A0A0U1J8I7/237-265_307-348 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM A0A0D6GRL4/237-265_307-348 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM A0A315GPR1/237-265_307-348 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM A0A3Z2F2Q5/237-265_307-348 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM A0A3V8MSJ3/237-265_307-348 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM A0A0H3NF43/237-265_307-348 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM A0A0F7J7R2/237-265_307-348 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM E8XDE7/237-265_307-348 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM A0A0F6AZE5/237-265_307-348 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM A0A447NXI3/237-265_309-350 QLTNTATLRPGQWSNDVPALREILQRTGM-------KSAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM A0A3V7TD03/237-265_309-350 QLTNTATLRPGQWSNDVPALREILQRTGM-------KSAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM A0A3Y7ULT3/237-265_309-350 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM Q8Z7Z4/237-265_309-350 QLTNTATLRPGQWSNDVPALREILQRTGM-------KPAPAAR-AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNM #=GC scorecons 2995599999999999999999999999922222229899969299959999999999999999999699999969996 #=GC scorecons_70 _**__************************_______*****_*_***_*******************_*********** #=GC scorecons_80 _**__************************_______*****_*_***_*******************_******_***_ #=GC scorecons_90 _**__************************_______*****_*_***_*******************_******_***_ //